Clone BS17882 Report

Search the DGRC for BS17882

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptD19B-RA
Protein status:BS17882.pep: full length peptide match
Sequenced Size:2357

Clone Sequence Records

BS17882.3prime Sequence

900 bp (840 high quality bases) assembled on 2007-05-30

> BS17882.3prime
ATGGTCTAGAAAGCTTTCAACCTTGATCCAACTTCAGTGCGTCCACTGAG
GTGCCCTCCGCCTCCGCCTTCTGCGCGTAGAAGCCGTCGTAAGTGTTCGA
CTGCTTCTGCAGCTTGTTTAGCTGCTCGAAGGCAGCCTCCTGGATCTTCC
GGAGCTCCGCCTCCGCCTTGCGCTTGGCCTCGTTCTCCTCGATCTGGTAG
GCCAGCAGCTCGGCGGTGGCCGCTGCCCTTTCCGCCGCCGGATCCTGGTA
TTGCTCGAAATTCTTCGGCTGCTGGCGCTTCACCGCGGTGCTGGACTCCG
CCTTGGGTCCAGCCGGCTCCTTGGGCTTGCCAGGCGGACGGGGCGGCTTG
TCGTGCACCTTCATATGCGTCTTGAGCACCTGCTCCTGCCGGAAATGCTT
GCCGCACACCTTGCACTCGTAAGGCTTTTCGCCAGTGTGTATGTACTCGT
GGTGCCGCAGGTACTGCTTCTTGGCGAATCTCTTCGGGCAGAAGCGGCAG
CAGAAGTCTTTGACCTTTTGATGCACCACCTTGTAGTGCAGCTTCATGTT
GCTCACGTGATTGAAGCCCTTGCCGCAGTCCGGGCAGATATGCTGGCCCT
CCTTCTTGGTGAAGTTCACTTGCGGCGACCACGAGGGCAGGTTGACCGAT
GGAATTGGATTGGCCACCGTTCCCGCCAACTGAGCAATGTCCACCCGCTC
GACGCGACCACGCAGGTGCGGACTGGGCTTGGCTATTGTCGAGGATCCAC
TGGCCCCGTCGCCCATTAAGGCATTGGTCCCCTGCGTCTTGGGCAAATCA
CGCTTCTCGTGCGTCTTCAAATGCTTGGTTAGGCCCTTCTCGAAGAGGAA
CACCTTGCCGCAGATCTTGCACTCGCAGCACTTTTCGCCGGTATGACTTC

BS17882.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10270-PA 2325 D19B-RA 1442..2318 900..24 4385 100 Minus
CG10269-PA 2538 D19A-RA 1543..1622 883..804 275 93.7 Minus
CG10269-PA 2538 D19A-RA 1901..1955 639..585 225 96.3 Minus
CG10269-PA 2538 D19A-RA 2290..2375 247..162 205 89.5 Minus
CG10274-PA 1545 CG10274-RA 817..869 634..582 165 92.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
D19B-RA 2685 CG10270-RA 1561..2444 900..17 4390 99.8 Minus
D19A-RA 3233 CG10269-RA 1978..2340 706..344 645 79.2 Minus
CG10274-RB 3034 CG10274-RB 1921..2177 639..383 370 77.7 Minus
D19A-RA 3233 CG10269-RA 2434..2580 247..101 360 83 Minus
D19A-RA 3233 CG10269-RA 1672..1766 898..804 340 90.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6182417..6183300 17..900 4390 99.8 Plus
3L 28110227 3L 6186723..6187085 344..706 645 78.5 Plus
3L 28110227 3L 6179534..6179790 383..639 370 76.3 Plus
3L 28110227 3L 6186483..6186629 101..247 360 83 Plus
3L 28110227 3L 6187297..6187391 804..898 340 90.5 Plus
3L 28110227 3L 6179181..6179308 123..250 190 76.6 Plus
Blast to na_te.dros performed on 2015-02-13 15:45:14 has no hits.

BS17882.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:22 Download gff for BS17882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10270-PA 1442..2325 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:20 Download gff for BS17882.3prime
Subject Subject Range Query Range Percent Splice Strand
D19B-RA 1561..2446 13..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:24:56 Download gff for BS17882.3prime
Subject Subject Range Query Range Percent Splice Strand
D19B-RA 1561..2446 13..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:24:56 Download gff for BS17882.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6182415..6183300 13..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:20 Download gff for BS17882.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6175515..6176400 13..900 99   Plus

BS17882.5prime Sequence

857 bp (714 high quality bases) assembled on 2007-05-30

> BS17882.5prime
GAAGTTATCAGTCGACATGAATGAGGAGAGCCAGTACTCCATACACACGG
TGTGCCGCACCTGCCTGTCCACGGTGGACGACTCGGCGGCCTACGATCTG
TTCCGAGTGCCCGGTCTGGCCAAAAAGCTGTGCGTGTGCACCTCCTTGTC
CGTGGAGCAGGCGGATGGCTTTCCCAAGAACCTGTGCAATGTCTGCTTCT
CCAAGCTGAACGACCTGCACGACTTTCAGAAGCAGTGCGTCGATTCCGTT
CAAAAGTTCCAAGATCTGGTGGCCAGCAACGCGTTCGCCTGCCAAACAAA
CTTCGATGTTCTGGACACCAGTGCCGCTGTGGCGGATCTGCCGGGCGAGG
AAGAGGACAACGTGCACTTCGATCCGCTGCTCAACTCCAAGATCGAGATC
ATTGAGAACGAGGAGGACGTCTTCAAGATGCTCGAGTCCGTCGAAAAGGA
GGTCGAAGAGGTGGAGATGGAGATGGAACAGCCGTTTGGCCGAGTATCTC
AGGATGACTCCTTCGAGAGCGGCAACGACAACGACCTCGACGCAGACTTC
CAAATCAGTAGTGACGACGACATTCCACTGGCCCAGCGCAGCCGGCGTGG
AGCCACTCGTGGTTCCAAGGCGAAGGGCAAGCCGAAGTCGGCTGCCAAGC
GACAGGAGGAGGAATCCGAGGAGTCCGAGGAGACCAGCTCATCAGACGAC
TCCGATGGCAATCCGAAGGACAAGCCCAAACGCAAGAGGATTCCTGCTAC
GGAGCGGGATCGCCACCGCCTGATTGACTGCCACATCTGCCACCAGAAGT
TCAAGAAGGCGATTCGCTACGAGGAGCACATGAAGCATCACAACGACTTG
CTACCCT

BS17882.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10270-PA 2325 D19B-RA 1..841 17..857 4205 100 Plus
CG10269-PA 2538 D19A-RA 185..263 201..279 295 94.9 Plus
CG10269-PA 2538 D19A-RA 835..906 776..847 235 93 Plus
CG10269-PA 2538 D19A-RA 388..451 404..467 145 89 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
D19B-RA 2685 CG10270-RA 120..960 17..857 4205 100 Plus
D19A-RA 3233 CG10269-RA 253..600 125..472 690 80.2 Plus
CG10274-RB 3034 CG10274-RB 824..951 730..857 325 83.6 Plus
D19A-RA 3233 CG10269-RA 967..1060 764..857 320 89.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6183961..6184801 857..17 4205 100 Minus
3L 28110227 3L 6188524..6188871 472..125 690 79.9 Minus
3L 28110227 3L 6180879..6181006 857..730 325 83.6 Minus
3L 28110227 3L 6188064..6188157 857..764 320 89.4 Minus
3L 28110227 3L 6181482..6181653 281..110 260 76.7 Minus
3L 28110227 3L 6181274..6181379 471..366 200 79.2 Minus
Blast to na_te.dros performed on 2015-02-13 06:04:35 has no hits.

BS17882.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:26 Download gff for BS17882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10270-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:10:15 Download gff for BS17882.5prime
Subject Subject Range Query Range Percent Splice Strand
D19B-RA 120..960 17..857 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:36 Download gff for BS17882.5prime
Subject Subject Range Query Range Percent Splice Strand
D19B-RA 120..960 17..857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:36 Download gff for BS17882.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6183961..6184801 17..857 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:10:15 Download gff for BS17882.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6177061..6177901 17..857 100   Minus

BS17882.complete Sequence

2357 bp assembled on 2008-08-15

GenBank Submission: KX800576

> BS17882.complete
GAAGTTATCAGTCGACATGAATGAGGAGAGCCAGTACTCCATACACACGG
TGTGCCGCACCTGCCTGTCCACGGTGGACGACTCGGCGGCCTACGATCTG
TTCCGAGTGCCCGGTCTGGCCAAAAAGCTGTGCGTGTGCACCTCCTTGTC
CGTGGAGCAGGCGGATGGCTTTCCCAAGAACCTGTGCAATGTCTGCTTCT
CCAAGCTGAACGACCTGCACGACTTTCAGAAGCAGTGCGTCGATTCCGTT
CAAAAGTTCCAAGATCTGGTGGCCAGCAACGCGTTCGCCTGCCAAACAAA
CTTCGATGTTCTGGACACCAGTGCCGCTGTGGCGGATCTGCCGGGCGAGG
AAGAGGACAACGTGCACTTCGATCCGCTGCTCAACTCCAAGATCGAGATC
ATTGAGAACGAGGAGGACGTCTTCAAGATGCTCGAGTCCGTCGAAAAGGA
GGTCGAAGAGGTGGAGATGGAGATGGAACAGCCGTTTGGCCGAGTATCTC
AGGATGACTCCTTCGAGAGCGGCAACGACAACGACCTCGACGCAGACTTC
CAAATCAGTAGTGACGACGACATTCCACTGGCCCAGCGCAGCCGGCGTGG
AGCCACTCGTGGTTCCAAGGCGAAGGGCAAGCCGAAGTCGGCTGCCAAGC
GACAGGAGGAGGAATCCGAGGAGTCCGAGGAGACCAGCTCATCAGACGAC
TCCGATGGCAATCCGAAGGACAAGCCCAAACGCAAGAGGATTCCTGCTAC
GGAGCGGGATCGCCACCGCCTGATTGACTGCCACATCTGCCACCAGAAGT
TCAAGAAGGCGATTCGCTACGAGGAGCACATGAAGCATCACAACGACTTG
CTACCCTTCCAGTGCACCGTCGAGAGTTGCCGAAAAGGCTTTACCACCGC
CAATGGACTGCGCGTCCATGTGGAGCACGCCCACACGGAGACATCGGCTA
TGCATCCGTGCACCTACGAGGGCTGCAACAAGTCCTTTGCCCGGCCCGTG
CTGCTCAGCTTCCACATGAAACGCGTGCACAAGGTGGACACCCCGCAGAG
GGACTTCCCCTGCACGGAGTGCGAGAAGGTCTTCCGCTGCCCCACTGCCC
TCAAGAAGCACATGTACAAGCACACGGGCGAGGAGCTGCCCTTCGCATGT
GAAATTTGCGGCAAGCGCTTCCCCATCAATAGTGTGCTGCGCGACCATCT
GCTGCGCCATGCGGGCATCAAGAACCATGTGTGCCCGTACTGCGGAGTGG
GCAAGACGACGCGCCAGGAGTGGAACAAGCACATCCTTACCCACACGAAG
GAGAAGAAGTACGAGTGCCGGCAGTGCGACCACGCCTCCCACAACAAACA
GGCGCTGGCCAACCACGTGAAGGTGGTGCACGAGAAGCGCAAGGACTTTG
CCTGCCAGTACTGCGGAAAGACCTTTGGCAAGTCGCACGCCTGCAAGATT
CACGAGAGAAGTCATACCGGCGAAAAGTGCTGCGAGTGCAAGATCTGCGG
CAAGGTGTTCCTCTTCGAGAAGGGCCTAACCAAGCATTTGAAGACGCACG
AGAAGCGTGATTTGCCCAAGACGCAGGGGACCAATGCCTTAATGGGCGAC
GGGGCCAGTGGATCCTCGACAATAGCCAAGCCCAGTCCGCACCTGCGTGG
TCGCGTCGAGCGGGTGGACATTGCTCAGTTGGCGGGAACGGTGGCCAATC
CAATTCCATCGGTCAACCTGCCCTCGTGGTCGCCGCAAGTGAACTTCACC
AAGAAGGAGGGCCAGCATATCTGCCCGGACTGCGGCAAGGGCTTCAATCA
CGTGAGCAACATGAAGCTGCACTACAAGGTGGTGCATCAAAAGGTCAAAG
ACTTCTGCTGCCGCTTCTGCCCGAAGAGATTCGCCAAGAAGCAGTACCTG
CGGCACCACGAGTACATACACACTGGCGAAAAGCCTTACGAGTGCAAGGT
GTGCGGCAAGCATTTCCGGCAGGAGCAGGTGCTCAAGACGCATATGAAGG
TGCACGACAAGCCGCCCCGTCCGCCTGGCAAGCCCAAGGAGCCGGCTGGA
CCCAAGGCGGAGTCCAGCACCGCGGTGAAGCGCCAGCAGCCGAAGAATTT
CGAGCAATACCAGGATCCGGCGGCGGAAAGGGCAGCGGCCACCGCCGAGC
TGCTGGCCTACCAGATCGAGGAGAACGAGGCCAAGCGCAAGGCGGAGGCG
GAGCTCCGGAAGATCCAGGAGGCTGCCTTCGAGCAGCTAAACAAGCTGCA
GAAGCAGTCGAACACTTACGACGGCTTCTACGCGCAGAAGGCGGAGGCGG
AGGGCACCTCAGTGGACGCACTGAAGTTGGATCATGTTTGAAAGCTTTCT
AGACCAT

BS17882.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
D19B-RA 2325 CG10270-PA 1..2325 17..2341 11625 100 Plus
D19A-RA 2538 CG10269-PA 823..1622 764..1554 1715 81.2 Plus
CG10274-RB 2592 CG10274-PB 762..1600 730..1559 1010 75 Plus
D19A-RA 2538 CG10269-PA 109..456 125..472 690 79.9 Plus
D19A-RA 2538 CG10269-PA 1834..2196 1652..2014 645 78.5 Plus
D19A-RA 2538 CG10269-PA 2290..2436 2111..2257 360 83 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
D19B-RA 2685 CG10270-RA 120..2444 17..2341 11625 100 Plus
D19A-RA 3233 CG10269-RA 967..1766 764..1554 1715 81.2 Plus
CG10274-RB 3034 CG10274-RB 824..1662 730..1559 1010 75 Plus
D19A-RA 3233 CG10269-RA 253..600 125..472 690 79.9 Plus
D19A-RA 3233 CG10269-RA 1978..2340 1652..2014 645 78.5 Plus
D19A-RA 3233 CG10269-RA 2434..2580 2111..2257 360 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6182417..6183872 2341..886 7280 100 Minus
3L 28110227 3L 6183930..6184801 888..17 4360 100 Minus
3L 28110227 3L 6187297..6187796 1554..1055 1435 85.8 Minus
3L 28110227 3L 6180181..6180623 1492..1050 775 78.3 Minus
3L 28110227 3L 6188524..6188871 472..125 690 79.9 Minus
3L 28110227 3L 6186723..6187085 2014..1652 645 78.5 Minus
3L 28110227 3L 6190735..6191124 1103..1492 435 74.1 Plus
3L 28110227 3L 6179534..6179790 1975..1719 370 76.3 Minus
3L 28110227 3L 6180870..6181006 866..730 370 84.7 Minus
3L 28110227 3L 6186483..6186629 2257..2111 360 83 Minus
3L 28110227 3L 6188055..6188157 866..764 350 89.3 Minus
3L 28110227 3L 6181482..6181653 281..110 260 76.7 Minus
3L 28110227 3L 6181274..6181379 471..366 200 79.2 Minus
3L 28110227 3L 6179181..6179308 2235..2108 190 76.6 Minus
Blast to na_te.dros performed on 2014-11-26 16:39:40 has no hits.

BS17882.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:42:12 Download gff for BS17882.complete
Subject Subject Range Query Range Percent Splice Strand
D19B-RA 238..2564 17..2345 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:29 Download gff for BS17882.complete
Subject Subject Range Query Range Percent Splice Strand
D19B-RA 120..2443 17..2340 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:03 Download gff for BS17882.complete
Subject Subject Range Query Range Percent Splice Strand
D19B-RA 238..2561 17..2340 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:22 Download gff for BS17882.complete
Subject Subject Range Query Range Percent Splice Strand
D19B-RA 120..2443 17..2340 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:22 Download gff for BS17882.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6182418..6183870 888..2340 100 <- Minus
3L 6183931..6184801 17..887 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:29 Download gff for BS17882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6175518..6176970 888..2340 100 <- Minus
arm_3L 6177031..6177901 17..887 100   Minus

BS17882.pep Sequence

Translation from 16 to 2340

> BS17882.pep
MNEESQYSIHTVCRTCLSTVDDSAAYDLFRVPGLAKKLCVCTSLSVEQAD
GFPKNLCNVCFSKLNDLHDFQKQCVDSVQKFQDLVASNAFACQTNFDVLD
TSAAVADLPGEEEDNVHFDPLLNSKIEIIENEEDVFKMLESVEKEVEEVE
MEMEQPFGRVSQDDSFESGNDNDLDADFQISSDDDIPLAQRSRRGATRGS
KAKGKPKSAAKRQEEESEESEETSSSDDSDGNPKDKPKRKRIPATERDRH
RLIDCHICHQKFKKAIRYEEHMKHHNDLLPFQCTVESCRKGFTTANGLRV
HVEHAHTETSAMHPCTYEGCNKSFARPVLLSFHMKRVHKVDTPQRDFPCT
ECEKVFRCPTALKKHMYKHTGEELPFACEICGKRFPINSVLRDHLLRHAG
IKNHVCPYCGVGKTTRQEWNKHILTHTKEKKYECRQCDHASHNKQALANH
VKVVHEKRKDFACQYCGKTFGKSHACKIHERSHTGEKCCECKICGKVFLF
EKGLTKHLKTHEKRDLPKTQGTNALMGDGASGSSTIAKPSPHLRGRVERV
DIAQLAGTVANPIPSVNLPSWSPQVNFTKKEGQHICPDCGKGFNHVSNMK
LHYKVVHQKVKDFCCRFCPKRFAKKQYLRHHEYIHTGEKPYECKVCGKHF
RQEQVLKTHMKVHDKPPRPPGKPKEPAGPKAESSTAVKRQQPKNFEQYQD
PAAERAAATAELLAYQIEENEAKRKAEAELRKIQEAAFEQLNKLQKQSNT
YDGFYAQKAEAEGTSVDALKLDHV*

BS17882.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
D19B-PA 774 CG10270-PA 1..774 1..774 4195 100 Plus
D19A-PA 845 CG10269-PA 1..845 1..774 2928 65.8 Plus
CG10274-PB 863 CG10274-PB 6..863 3..774 2536 57.4 Plus
CG7386-PA 662 CG7386-PA 2..631 4..683 1670 47.2 Plus
CG10147-PB 448 CG10147-PB 7..437 13..519 556 28.1 Plus