Clone BS17886 Report

Search the DGRC for BS17886

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG12605-RA
Protein status:BS17886.pep: full length peptide match
Sequenced Size:1892

Clone Sequence Records

BS17886.3prime Sequence

853 bp (840 high quality bases) assembled on 2007-05-30

> BS17886.3prime
ATGGTCTAGAAAGCTTCTAGCCCTTCAGGATGTCCTGGCTGTTCTCATCG
CTCTCCAGCTCGTCGCCCATCTCCAGTTCGTCCTGCTTGCTGCAGTCGTC
GTCCTCCTCCTCCAGACCCTTGCCCTGATCGATGGCCCCGGCATCCCGGA
GGCATGCCGATTCCAGGTGCTTGTTGAGGTACGATTTGAGGGCGAAGGTC
TTGTTGCAGCGATGGCACTTGAAGTTCTTATCGCCCGAATGGGTCTGCAT
GTGGGCCCGCAGATTGGAGCGGTCGGCAAAGGCTTTGCCGCAATGGACAC
AGGCGTAGGGCTTCTCGCCGGTGTGGGACCGAAGGTGTCCCTGGAGTAGC
CAGGGTCTGGAGAAGAGCTTGCCGCAGATGTCGCAGCTGTGCGAGAGCTT
GTGCGTGAGCAAGTGCATCGCCAGGGCGGGCATGGAAACATAGGCCTTGC
CGCAGGTGTTGCACTTCTTGGCCGACTGTGAGTCCAGCGAGCGATGGGTC
TGCTTGTGGCGCGAGAGGTTCGATGATGTGGCATACTGTTTGCCACACTC
GCAGCACTTGTAGCAGCCCCTCTTCCGCTTGGCGTAGTTCTCCCCGTTGC
CGGAGGAGCTGTGTCCCAGGCTGGCTGCCGGATTCTCTGGCGGCTCCGAT
GGCGGACCACCTCCTGACGAGGCATTGCTCTGGGCACTCTTGGGACGCGG
CTGCATCGGTTCCTGCCTGTCCTGCTTGGTCACAGCAGCCGCCTTGCTCG
CCTTGGTCCTGCCATCCAGCATGTTGAGGCACATCTTGAGGGCCGAGGCA
CGCTGCTGGTTTTGCTGCGGATTGGGCTTGCCCCACTGCTGCAAACCTGA
TTC

BS17886.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12605-PB 1860 CG12605-RB 1024..1847 853..30 4095 99.8 Minus
CG12605-PC 1425 CG12605-RC 589..1412 853..30 4095 99.8 Minus
CG12605-PA 1860 CG12605-RA 1024..1847 853..30 4095 99.8 Minus
CG1130-PA 1962 scrt-RA 1404..1628 557..333 550 89.7 Minus
CG1130-PA 1962 scrt-RA 1669..1811 292..150 190 85.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12605-RE 2770 CG12605-RE 1798..2621 853..30 4105 99.9 Minus
CG12605-RD 7025 CG12605-RD 1913..2736 853..30 4105 99.9 Minus
CG12605-RA 4340 CG12605-RA 1832..2655 853..30 4105 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3958540..3959363 30..853 4105 99.9 Plus
3L 28110227 3L 3987495..3987907 562..150 1225 86.4 Minus
3L 28110227 3L 584701..584843 236..378 205 76.2 Plus
Blast to na_te.dros performed 2015-02-13 15:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 2449..2529 289..208 110 61 Minus

BS17886.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:42 Download gff for BS17886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12605-PA 1024..1852 22..853 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:23 Download gff for BS17886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12605-RA 1832..2660 22..853 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:25:50 Download gff for BS17886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12605-RA 1832..2660 22..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:25:50 Download gff for BS17886.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3958532..3959363 22..853 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:23 Download gff for BS17886.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3958532..3959363 22..853 99   Plus

BS17886.5prime Sequence

906 bp (740 high quality bases) assembled on 2007-05-30

> BS17886.5prime
GAAGTTATCAGTCGACATGTCCGTGGACTTTATACTGCCCAATCGCAATA
AGATCCAAACGATTGCCTATGCGAGTGCCAGCAAGAAGTATGTGCCCGGT
GGATCGGGATCCACCCTGAGCTCCGGATCGGTATCGGCATCGGGTGCCGA
CTTGCAGAGCTGGCGACGACCCAAGCCCAGGACCTCCGGAAAGGTGAAGT
TCGATGATAAATCCCCGCTGACTGCCAGTTCGGTGCTAAAAAATGCCAAT
GGAAATGGCCTGGGAACTGGAGGCAAGTCACCTCTCAAATCGCTGGCCAA
AAGGAACTCGCGTTCAATTCTCAAGCGGGAGATCATCGATCTGGACGACG
AGGATGGCGAGGAGCAGGAGGATCAGCTCTGCGAACATCTGGAATGGTCC
GCCGCCCAATCTCTGGTCCAAATGAACTCCTCCAAGCAGGAAAAGCAACG
GCGAGCAGGAACTACAGGATCTCCTGCAACTGTGGCAGCGCCAGTCTCCG
CCTCAGTGTCGCTGCGCCGTCCAGTGGGCAGAGCTCCGGCGGAGGATGGC
AAGGTGATTTTCTATGCCCCGCCCGCCAGCGCCAGTGGATCTCCGCGTCA
GCCGGAGCCGGTGGCCTTGAAGAGGGAGCGCGAGCGGGACAAGGAGCGCG
AGAGGGAAAAAGAACGCGAGCGGGACCGCATGCGGGAACAACAATTGGTC
GCGGCGACGGCAGCGGCATCGATTTACCGGGGTCGCAGCGTGGAGGAAAC
GGAAGCGGGCCACGATCTGCTCTCCCTGTCACAGAGTCTGCCGCCCCTGA
TCCCGCCATGCGTGGTCACCATCATGAAGCAGGAGCAGGAGCAACTGCGC
TCCCCGGAAATCCAGGAGATATCGAACAGCGCCTTCAGCCGATCGCCCCA
GTCGAC

BS17886.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12605-PB 1860 CG12605-RB 1..890 17..906 4375 99.6 Plus
CG12605-PA 1860 CG12605-RA 1..890 17..906 4375 99.6 Plus
CG12605-PC 1425 CG12605-RC 56..455 507..906 1925 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12605-RE 2770 CG12605-RE 775..1664 17..906 4405 99.7 Plus
CG12605-RD 7025 CG12605-RD 890..1779 17..906 4405 99.7 Plus
CG12605-RA 4340 CG12605-RA 809..1698 17..906 4405 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3961572..3962061 506..17 2450 100 Minus
3L 28110227 3L 3959497..3959899 906..504 1970 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 06:04:45 has no hits.

BS17886.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:47 Download gff for BS17886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12605-PA 1..890 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:10:22 Download gff for BS17886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12605-RA 795..1698 4..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:59 Download gff for BS17886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12605-RA 795..1698 4..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:59 Download gff for BS17886.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3961572..3962075 4..506 99   Minus
3L 3959497..3959896 507..906 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:10:22 Download gff for BS17886.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3959497..3959896 507..906 99 <- Minus
arm_3L 3961572..3962075 4..506 99   Minus

BS17886.complete Sequence

1892 bp assembled on 2008-08-15

GenBank Submission: KX802888

> BS17886.complete
GAAGTTATCAGTCGACATGTCCGTGGACTTTATACTGCCCAATCGCAATA
AGATCCAAACGATTGCCTATGCGAGTGCCAGCAAGAAGTATGTGCCCGGT
GGATCGGGATCCACCCTGAGCTCCGGATCGGTATCGGCATCGGGTGCCGA
CTTGCAGAGCTGGCGACGACCCAAGCCCAGGACCTCCGGAAAGGTGAAGT
TCGATGATAAATCCCCGCTGACTGCCAGTTCGGTGCTAAAAAATGCCAAT
GGAAATGGCCTGGGAACTGGAGGCAAGTCACCTCTCAAATCGCTGGCCAA
AAGGAACTCGCGTTCAATTCTCAAGCGGGAGATCATCGATCTGGACGACG
AGGATGGCGAGGAGCAGGAGGATCAGCTCTGCGAACATCTGGAATGGTCC
GCCGCCCAATCTCTGGTCCAAATGAACTCCTCCAAGCAGGAAAAGCAACG
GCGAGCAGGAACTACAGGATCTCCTGCAACTGTGGCAGCGCCAGTCTCCG
CCTCAGTGTCGCTGCGCCGTCCAGTGGGCAGAGCTCCGGCGGAGGATGGC
AAGGTGATTTTCTATGCCCCGCCCGCCAGCGCCAGTGGATCTCCGCGTCA
GCCGGAGCCGGTGGCCTTGAAGAGGGAGCGCGAGCGGGACAAGGAGCGCG
AGAGGGAAAAAGAACGCGAGCGGGACCGCATGCGGGAACAACAATTGGTC
GCGGCGACGGCAGCGGCATCGATTTACCGGGGTCGCAGCGTGGAGGAAAC
GGAAGCGGCCCACGATCTGCTCTCCCTGTCACAGAGTCTGCCGCCCCTGA
TCCCGCCATGCGTGGTCACCATCATGAAGCAGGAGCAGGAGCAACTGCGC
TCCCCGGAAATCCAGGAGATATCGAACAGCGCTTCCAGCCGATCGCCCCA
GTCGACCATCCGGTTCATTGGCAGCAGCTCATACGACCTGATGGGTGGCT
CCTCGGAGGGGGCCAACAATTGCTCGCCTCTGACGCCGCCGAACTCGGAC
CACAGCTCCGACGTGGATATCGACATGTCTTCCTCCTCCGAATCAGGTCT
GCAGCAGTGGGGCAAGCCCAATCCGCAGCAAAACCAGCAGCGTGCCTCGG
CCCTCAAGATGTGCCTCAACATGCTGGATGGCAGGACCAAGGCGAGCAAG
GCGGCTGCTGTGACCAAGCAGGACAGGCAGGAACCGATGCAGCCGCGTCC
CAAGAGTGCCCAGAGCAATGCCTCGTCAGGAGGTGGTCCGCCATCGGAGC
CGCCAGAGAATCCGGCAGCCAGCCTGGGACACAGCTCCTCCGGCAACGGG
GAGAACTACGCCAAGCGGAAGAGGGGCTGCTACAAGTGCTGCGAGTGTGG
CAAACAGTATGCCACATCATCGAACCTCTCGCGCCACAAGCAGACCCATC
GCTCGCTGGACTCACAGTCGGCCAAGAAGTGCAACACCTGCGGCAAGGCC
TATGTTTCCATGCCCGCCCTGGCGATGCACTTGCTCACGCACAAGCTCTC
GCACAGCTGCGACATCTGCGGCAAGCTCTTCTCCAGACCCTGGCTACTCC
AGGGACACCTTCGGTCCCACACCGGCGAGAAGCCCTACGCCTGTGTCCAT
TGCGGCAAAGCCTTTGCCGACCGCTCCAATCTGCGGGCCCACATGCAGAC
CCATTCGGGCGATAAGAACTTCAAGTGCCATCGCTGCAACAAGACCTTCG
CCCTCAAATCGTACCTCAACAAGCACCTGGAATCGGCATGCCTCCGGGAT
GCCGGGGCCATCGATCAGGGCAAGGGTCTGGAGGAGGAGGACGACGACTG
CAGCAAGCAGGACGAACTGGAGATGGGCGACGAGCTGGAGAGCGATGAGA
ACAGCCAGGACATTGTGGTGGCCTAGAAGCTTTCTAGACCAT

BS17886.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12605-RE 1860 CG12605-PE 1..1860 17..1876 9300 100 Plus
CG12605-RD 1860 CG12605-PD 1..1860 17..1876 9300 100 Plus
CG12605-RA 1860 CG12605-PA 1..1860 17..1876 9300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12605-RE 2770 CG12605-RE 775..2634 17..1876 9300 100 Plus
CG12605-RD 7025 CG12605-RD 890..2749 17..1876 9300 100 Plus
CG12605-RA 4340 CG12605-RA 809..2668 17..1876 9300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3958527..3959899 1876..504 6865 100 Minus
3L 28110227 3L 3961572..3962061 506..17 2450 100 Minus
3L 28110227 3L 3987495..3987907 1331..1743 1225 86.4 Plus
3L 28110227 3L 584701..584843 1657..1515 205 76.2 Minus
Blast to na_te.dros performed 2014-11-27 08:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 3963..4016 1044..992 114 70.4 Minus

BS17886.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:40:28 Download gff for BS17886.complete
Subject Subject Range Query Range Percent Splice Strand
CG12605-RA 795..2668 4..1876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:48 Download gff for BS17886.complete
Subject Subject Range Query Range Percent Splice Strand
CG12605-RA 809..2668 17..1876 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:59 Download gff for BS17886.complete
Subject Subject Range Query Range Percent Splice Strand
CG12605-RA 809..2668 17..1876 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:34 Download gff for BS17886.complete
Subject Subject Range Query Range Percent Splice Strand
CG12605-RA 809..2668 17..1876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:34 Download gff for BS17886.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3961572..3962061 17..506 100   Minus
3L 3958527..3959896 507..1876 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:48 Download gff for BS17886.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3958527..3959896 507..1876 100 <- Minus
arm_3L 3961572..3962061 17..506 100   Minus

BS17886.pep Sequence

Translation from 16 to 1875

> BS17886.pep
MSVDFILPNRNKIQTIAYASASKKYVPGGSGSTLSSGSVSASGADLQSWR
RPKPRTSGKVKFDDKSPLTASSVLKNANGNGLGTGGKSPLKSLAKRNSRS
ILKREIIDLDDEDGEEQEDQLCEHLEWSAAQSLVQMNSSKQEKQRRAGTT
GSPATVAAPVSASVSLRRPVGRAPAEDGKVIFYAPPASASGSPRQPEPVA
LKRERERDKEREREKERERDRMREQQLVAATAAASIYRGRSVEETEAAHD
LLSLSQSLPPLIPPCVVTIMKQEQEQLRSPEIQEISNSASSRSPQSTIRF
IGSSSYDLMGGSSEGANNCSPLTPPNSDHSSDVDIDMSSSSESGLQQWGK
PNPQQNQQRASALKMCLNMLDGRTKASKAAAVTKQDRQEPMQPRPKSAQS
NASSGGGPPSEPPENPAASLGHSSSGNGENYAKRKRGCYKCCECGKQYAT
SSNLSRHKQTHRSLDSQSAKKCNTCGKAYVSMPALAMHLLTHKLSHSCDI
CGKLFSRPWLLQGHLRSHTGEKPYACVHCGKAFADRSNLRAHMQTHSGDK
NFKCHRCNKTFALKSYLNKHLESACLRDAGAIDQGKGLEEEDDDCSKQDE
LEMGDELESDENSQDIVVA*

BS17886.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12605-PE 619 CG12605-PE 1..619 1..619 3217 100 Plus
CG12605-PD 619 CG12605-PD 1..619 1..619 3217 100 Plus
CG12605-PA 619 CG12605-PA 1..619 1..619 3217 100 Plus
CG12605-PB 619 CG12605-PB 1..619 1..619 3217 100 Plus
CG12605-PC 474 CG12605-PC 19..474 164..619 2396 99.8 Plus