Clone Sequence Records
BS17886.3prime Sequence
853 bp (840 high quality bases) assembled on 2007-05-30
> BS17886.3prime
ATGGTCTAGAAAGCTTCTAGCCCTTCAGGATGTCCTGGCTGTTCTCATCG
CTCTCCAGCTCGTCGCCCATCTCCAGTTCGTCCTGCTTGCTGCAGTCGTC
GTCCTCCTCCTCCAGACCCTTGCCCTGATCGATGGCCCCGGCATCCCGGA
GGCATGCCGATTCCAGGTGCTTGTTGAGGTACGATTTGAGGGCGAAGGTC
TTGTTGCAGCGATGGCACTTGAAGTTCTTATCGCCCGAATGGGTCTGCAT
GTGGGCCCGCAGATTGGAGCGGTCGGCAAAGGCTTTGCCGCAATGGACAC
AGGCGTAGGGCTTCTCGCCGGTGTGGGACCGAAGGTGTCCCTGGAGTAGC
CAGGGTCTGGAGAAGAGCTTGCCGCAGATGTCGCAGCTGTGCGAGAGCTT
GTGCGTGAGCAAGTGCATCGCCAGGGCGGGCATGGAAACATAGGCCTTGC
CGCAGGTGTTGCACTTCTTGGCCGACTGTGAGTCCAGCGAGCGATGGGTC
TGCTTGTGGCGCGAGAGGTTCGATGATGTGGCATACTGTTTGCCACACTC
GCAGCACTTGTAGCAGCCCCTCTTCCGCTTGGCGTAGTTCTCCCCGTTGC
CGGAGGAGCTGTGTCCCAGGCTGGCTGCCGGATTCTCTGGCGGCTCCGAT
GGCGGACCACCTCCTGACGAGGCATTGCTCTGGGCACTCTTGGGACGCGG
CTGCATCGGTTCCTGCCTGTCCTGCTTGGTCACAGCAGCCGCCTTGCTCG
CCTTGGTCCTGCCATCCAGCATGTTGAGGCACATCTTGAGGGCCGAGGCA
CGCTGCTGGTTTTGCTGCGGATTGGGCTTGCCCCACTGCTGCAAACCTGA
TTC
BS17886.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12605-PB | 1860 | CG12605-RB | 1024..1847 | 853..30 | 4095 | 99.8 | Minus |
CG12605-PC | 1425 | CG12605-RC | 589..1412 | 853..30 | 4095 | 99.8 | Minus |
CG12605-PA | 1860 | CG12605-RA | 1024..1847 | 853..30 | 4095 | 99.8 | Minus |
CG1130-PA | 1962 | scrt-RA | 1404..1628 | 557..333 | 550 | 89.7 | Minus |
CG1130-PA | 1962 | scrt-RA | 1669..1811 | 292..150 | 190 | 85.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12605-RE | 2770 | CG12605-RE | 1798..2621 | 853..30 | 4105 | 99.9 | Minus |
CG12605-RD | 7025 | CG12605-RD | 1913..2736 | 853..30 | 4105 | 99.9 | Minus |
CG12605-RA | 4340 | CG12605-RA | 1832..2655 | 853..30 | 4105 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3958540..3959363 | 30..853 | 4105 | 99.9 | Plus |
3L | 28110227 | 3L | 3987495..3987907 | 562..150 | 1225 | 86.4 | Minus |
3L | 28110227 | 3L | 584701..584843 | 236..378 | 205 | 76.2 | Plus |
Blast to na_te.dros performed 2015-02-13 15:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 2449..2529 | 289..208 | 110 | 61 | Minus |
BS17886.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:42 Download gff for
BS17886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12605-PA | 1024..1852 | 22..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:23 Download gff for
BS17886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12605-RA | 1832..2660 | 22..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:25:50 Download gff for
BS17886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12605-RA | 1832..2660 | 22..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:25:50 Download gff for
BS17886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3958532..3959363 | 22..853 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:23 Download gff for
BS17886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3958532..3959363 | 22..853 | 99 | | Plus |
BS17886.5prime Sequence
906 bp (740 high quality bases) assembled on 2007-05-30
> BS17886.5prime
GAAGTTATCAGTCGACATGTCCGTGGACTTTATACTGCCCAATCGCAATA
AGATCCAAACGATTGCCTATGCGAGTGCCAGCAAGAAGTATGTGCCCGGT
GGATCGGGATCCACCCTGAGCTCCGGATCGGTATCGGCATCGGGTGCCGA
CTTGCAGAGCTGGCGACGACCCAAGCCCAGGACCTCCGGAAAGGTGAAGT
TCGATGATAAATCCCCGCTGACTGCCAGTTCGGTGCTAAAAAATGCCAAT
GGAAATGGCCTGGGAACTGGAGGCAAGTCACCTCTCAAATCGCTGGCCAA
AAGGAACTCGCGTTCAATTCTCAAGCGGGAGATCATCGATCTGGACGACG
AGGATGGCGAGGAGCAGGAGGATCAGCTCTGCGAACATCTGGAATGGTCC
GCCGCCCAATCTCTGGTCCAAATGAACTCCTCCAAGCAGGAAAAGCAACG
GCGAGCAGGAACTACAGGATCTCCTGCAACTGTGGCAGCGCCAGTCTCCG
CCTCAGTGTCGCTGCGCCGTCCAGTGGGCAGAGCTCCGGCGGAGGATGGC
AAGGTGATTTTCTATGCCCCGCCCGCCAGCGCCAGTGGATCTCCGCGTCA
GCCGGAGCCGGTGGCCTTGAAGAGGGAGCGCGAGCGGGACAAGGAGCGCG
AGAGGGAAAAAGAACGCGAGCGGGACCGCATGCGGGAACAACAATTGGTC
GCGGCGACGGCAGCGGCATCGATTTACCGGGGTCGCAGCGTGGAGGAAAC
GGAAGCGGGCCACGATCTGCTCTCCCTGTCACAGAGTCTGCCGCCCCTGA
TCCCGCCATGCGTGGTCACCATCATGAAGCAGGAGCAGGAGCAACTGCGC
TCCCCGGAAATCCAGGAGATATCGAACAGCGCCTTCAGCCGATCGCCCCA
GTCGAC
BS17886.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12605-PB | 1860 | CG12605-RB | 1..890 | 17..906 | 4375 | 99.6 | Plus |
CG12605-PA | 1860 | CG12605-RA | 1..890 | 17..906 | 4375 | 99.6 | Plus |
CG12605-PC | 1425 | CG12605-RC | 56..455 | 507..906 | 1925 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12605-RE | 2770 | CG12605-RE | 775..1664 | 17..906 | 4405 | 99.7 | Plus |
CG12605-RD | 7025 | CG12605-RD | 890..1779 | 17..906 | 4405 | 99.7 | Plus |
CG12605-RA | 4340 | CG12605-RA | 809..1698 | 17..906 | 4405 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3961572..3962061 | 506..17 | 2450 | 100 | Minus |
3L | 28110227 | 3L | 3959497..3959899 | 906..504 | 1970 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:04:45 has no hits.
BS17886.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:47 Download gff for
BS17886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12605-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:10:22 Download gff for
BS17886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12605-RA | 795..1698 | 4..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:59 Download gff for
BS17886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12605-RA | 795..1698 | 4..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:59 Download gff for
BS17886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3961572..3962075 | 4..506 | 99 | | Minus |
3L | 3959497..3959896 | 507..906 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:10:22 Download gff for
BS17886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3959497..3959896 | 507..906 | 99 | <- | Minus |
arm_3L | 3961572..3962075 | 4..506 | 99 | | Minus |
BS17886.complete Sequence
1892 bp assembled on 2008-08-15
GenBank Submission: KX802888
> BS17886.complete
GAAGTTATCAGTCGACATGTCCGTGGACTTTATACTGCCCAATCGCAATA
AGATCCAAACGATTGCCTATGCGAGTGCCAGCAAGAAGTATGTGCCCGGT
GGATCGGGATCCACCCTGAGCTCCGGATCGGTATCGGCATCGGGTGCCGA
CTTGCAGAGCTGGCGACGACCCAAGCCCAGGACCTCCGGAAAGGTGAAGT
TCGATGATAAATCCCCGCTGACTGCCAGTTCGGTGCTAAAAAATGCCAAT
GGAAATGGCCTGGGAACTGGAGGCAAGTCACCTCTCAAATCGCTGGCCAA
AAGGAACTCGCGTTCAATTCTCAAGCGGGAGATCATCGATCTGGACGACG
AGGATGGCGAGGAGCAGGAGGATCAGCTCTGCGAACATCTGGAATGGTCC
GCCGCCCAATCTCTGGTCCAAATGAACTCCTCCAAGCAGGAAAAGCAACG
GCGAGCAGGAACTACAGGATCTCCTGCAACTGTGGCAGCGCCAGTCTCCG
CCTCAGTGTCGCTGCGCCGTCCAGTGGGCAGAGCTCCGGCGGAGGATGGC
AAGGTGATTTTCTATGCCCCGCCCGCCAGCGCCAGTGGATCTCCGCGTCA
GCCGGAGCCGGTGGCCTTGAAGAGGGAGCGCGAGCGGGACAAGGAGCGCG
AGAGGGAAAAAGAACGCGAGCGGGACCGCATGCGGGAACAACAATTGGTC
GCGGCGACGGCAGCGGCATCGATTTACCGGGGTCGCAGCGTGGAGGAAAC
GGAAGCGGCCCACGATCTGCTCTCCCTGTCACAGAGTCTGCCGCCCCTGA
TCCCGCCATGCGTGGTCACCATCATGAAGCAGGAGCAGGAGCAACTGCGC
TCCCCGGAAATCCAGGAGATATCGAACAGCGCTTCCAGCCGATCGCCCCA
GTCGACCATCCGGTTCATTGGCAGCAGCTCATACGACCTGATGGGTGGCT
CCTCGGAGGGGGCCAACAATTGCTCGCCTCTGACGCCGCCGAACTCGGAC
CACAGCTCCGACGTGGATATCGACATGTCTTCCTCCTCCGAATCAGGTCT
GCAGCAGTGGGGCAAGCCCAATCCGCAGCAAAACCAGCAGCGTGCCTCGG
CCCTCAAGATGTGCCTCAACATGCTGGATGGCAGGACCAAGGCGAGCAAG
GCGGCTGCTGTGACCAAGCAGGACAGGCAGGAACCGATGCAGCCGCGTCC
CAAGAGTGCCCAGAGCAATGCCTCGTCAGGAGGTGGTCCGCCATCGGAGC
CGCCAGAGAATCCGGCAGCCAGCCTGGGACACAGCTCCTCCGGCAACGGG
GAGAACTACGCCAAGCGGAAGAGGGGCTGCTACAAGTGCTGCGAGTGTGG
CAAACAGTATGCCACATCATCGAACCTCTCGCGCCACAAGCAGACCCATC
GCTCGCTGGACTCACAGTCGGCCAAGAAGTGCAACACCTGCGGCAAGGCC
TATGTTTCCATGCCCGCCCTGGCGATGCACTTGCTCACGCACAAGCTCTC
GCACAGCTGCGACATCTGCGGCAAGCTCTTCTCCAGACCCTGGCTACTCC
AGGGACACCTTCGGTCCCACACCGGCGAGAAGCCCTACGCCTGTGTCCAT
TGCGGCAAAGCCTTTGCCGACCGCTCCAATCTGCGGGCCCACATGCAGAC
CCATTCGGGCGATAAGAACTTCAAGTGCCATCGCTGCAACAAGACCTTCG
CCCTCAAATCGTACCTCAACAAGCACCTGGAATCGGCATGCCTCCGGGAT
GCCGGGGCCATCGATCAGGGCAAGGGTCTGGAGGAGGAGGACGACGACTG
CAGCAAGCAGGACGAACTGGAGATGGGCGACGAGCTGGAGAGCGATGAGA
ACAGCCAGGACATTGTGGTGGCCTAGAAGCTTTCTAGACCAT
BS17886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12605-RE | 1860 | CG12605-PE | 1..1860 | 17..1876 | 9300 | 100 | Plus |
CG12605-RD | 1860 | CG12605-PD | 1..1860 | 17..1876 | 9300 | 100 | Plus |
CG12605-RA | 1860 | CG12605-PA | 1..1860 | 17..1876 | 9300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12605-RE | 2770 | CG12605-RE | 775..2634 | 17..1876 | 9300 | 100 | Plus |
CG12605-RD | 7025 | CG12605-RD | 890..2749 | 17..1876 | 9300 | 100 | Plus |
CG12605-RA | 4340 | CG12605-RA | 809..2668 | 17..1876 | 9300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3958527..3959899 | 1876..504 | 6865 | 100 | Minus |
3L | 28110227 | 3L | 3961572..3962061 | 506..17 | 2450 | 100 | Minus |
3L | 28110227 | 3L | 3987495..3987907 | 1331..1743 | 1225 | 86.4 | Plus |
3L | 28110227 | 3L | 584701..584843 | 1657..1515 | 205 | 76.2 | Minus |
Blast to na_te.dros performed 2014-11-27 08:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3963..4016 | 1044..992 | 114 | 70.4 | Minus |
BS17886.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:40:28 Download gff for
BS17886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12605-RA | 795..2668 | 4..1876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:48 Download gff for
BS17886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12605-RA | 809..2668 | 17..1876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:59 Download gff for
BS17886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12605-RA | 809..2668 | 17..1876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:34 Download gff for
BS17886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12605-RA | 809..2668 | 17..1876 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:34 Download gff for
BS17886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3961572..3962061 | 17..506 | 100 | | Minus |
3L | 3958527..3959896 | 507..1876 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:48 Download gff for
BS17886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3958527..3959896 | 507..1876 | 100 | <- | Minus |
arm_3L | 3961572..3962061 | 17..506 | 100 | | Minus |
BS17886.pep Sequence
Translation from 16 to 1875
> BS17886.pep
MSVDFILPNRNKIQTIAYASASKKYVPGGSGSTLSSGSVSASGADLQSWR
RPKPRTSGKVKFDDKSPLTASSVLKNANGNGLGTGGKSPLKSLAKRNSRS
ILKREIIDLDDEDGEEQEDQLCEHLEWSAAQSLVQMNSSKQEKQRRAGTT
GSPATVAAPVSASVSLRRPVGRAPAEDGKVIFYAPPASASGSPRQPEPVA
LKRERERDKEREREKERERDRMREQQLVAATAAASIYRGRSVEETEAAHD
LLSLSQSLPPLIPPCVVTIMKQEQEQLRSPEIQEISNSASSRSPQSTIRF
IGSSSYDLMGGSSEGANNCSPLTPPNSDHSSDVDIDMSSSSESGLQQWGK
PNPQQNQQRASALKMCLNMLDGRTKASKAAAVTKQDRQEPMQPRPKSAQS
NASSGGGPPSEPPENPAASLGHSSSGNGENYAKRKRGCYKCCECGKQYAT
SSNLSRHKQTHRSLDSQSAKKCNTCGKAYVSMPALAMHLLTHKLSHSCDI
CGKLFSRPWLLQGHLRSHTGEKPYACVHCGKAFADRSNLRAHMQTHSGDK
NFKCHRCNKTFALKSYLNKHLESACLRDAGAIDQGKGLEEEDDDCSKQDE
LEMGDELESDENSQDIVVA*
BS17886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12605-PE | 619 | CG12605-PE | 1..619 | 1..619 | 3217 | 100 | Plus |
CG12605-PD | 619 | CG12605-PD | 1..619 | 1..619 | 3217 | 100 | Plus |
CG12605-PA | 619 | CG12605-PA | 1..619 | 1..619 | 3217 | 100 | Plus |
CG12605-PB | 619 | CG12605-PB | 1..619 | 1..619 | 3217 | 100 | Plus |
CG12605-PC | 474 | CG12605-PC | 19..474 | 164..619 | 2396 | 99.8 | Plus |