Clone BS17888 Report

Search the DGRC for BS17888

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG34382-RC
Protein status:BS17888.pep: full length peptide match
Sequenced Size:2450

Clone Sequence Records

BS17888.complete Sequence

2450 bp assembled on 2009-12-07

GenBank Submission: KX806091

> BS17888.complete
GAAGTTATCAGTCGACATGAGAATCCAAATCTTGCTCCTGACACTCTTGC
TGGGCCTCGTCTGCGCCCAGGCCGTGGATGCGGAGGCCAAGAGCAGCCAA
GCCAAGCCAGCGGAAGACAGCAAGAGCTCCGCCTCCACGCCACTGGAATC
GGAGGCGACCAAAGACAAGCGACAAGTGAGCTCCAAGGAGACGTCTCTGT
ACCCCAACCACCGCAGCTCGGCGGCATCGTCAAGCGCCAACGATGATCCC
GAGGATGGTCAGGAAACCATCTACGGCTCCAAGCCGAATCAGTTCATCAT
TCGCCCCATTGCACCGCACCAGCATCAGCAGCACGAATCGCACCAGGAGC
CGCAGTTGAGGAACTTTGCGGCGGCCAATTCTCGACCCCATGCCGCCCAA
CTTCTCGAGCAGAGTCAGGAGGTGCAGCACTACGTGTATCTGCAAGATAT
AATGCGCCATCATCAGCCCAAGGCCCTGCTGGCCGCAGGTCAAGGCAAGG
GTGCGGCCAGTGCGCCCAAGAAGTCATCCACTCCGGTGGCCGAGGAGGAG
CAGGAGCAGGAACAGGAGGCGGAACAGCGATACGCGGTGTCCATTCAGCC
GCAGCCGCAGCAACAGCTCCAGCTCCAGCAACCACGTCCACGTCAGTACC
AGGGTCCCTATCAACTGCCATTGCCGCTGCCTGCTCCACAGCATCGATCG
GTGAATCCCCAGCAGCAGCAGCAGCAACATCAGCAGCCCTACCAAGTGAT
TCCCGAAGAGCAGTTTCTTAAGATCCTGGAGGAGGAGCTGCAGGCTAGAG
CCTATCATGAGCAACTTCGTCAGCAGCAGCAGCATCAACAGCAGCAGCAG
CAGCAGCAGCAACACCAACAGCAGCAGCAGCAACAGCACCACAAGCAACT
GCCCATCCACAGCACGGCTGCCACTCACAAAGTGTTGCAGCAGGCGGATC
CCTCGCTAGGATTAGGCGGCTATCGCGAGCGTTTTGTGGCCGAGCAGGAG
CTGGTGACACCAACTTATTCGCATCCCCGCGGTGGTCCCAAATATCTGCC
CTTGCCACAGGCGCAGCAAATCCAAGAGGATGATGAGCAACAACAGCAAC
AACCGCAGCGGGTGCAGCTCCACAAACCGATACCGCATCCCGGGCAGCAA
CTCATCCATGGACTGCCACCCCAGATTGCCTACTACCAGCCACAGATAAG
CTACAAGACCCTGCCCAACCATCCACTGGCGAAATCTTCTCTGGAAAGTG
AGATTGAGAAATTGCTGGCAGCCAATAAGCCAGGACAATCGTTGGCCTAC
GTTGACAGCAGCAATGAGCAGGTGGCGACAAGGCAGCCCGCTCCGCAGCA
CCCACCACCACCCACCTCGCATCCCGCGCTGAGGCAACCCAAGGCATACC
TGGCCAGTACGCCCAACTCCCTGCTGGATGCCAATAACCAACCGTTCGTT
CCATCGCTCTTCAAGTTCAGCAACTATCAGCAACCGACGCCAATTTATCC
CACGCCGGAACCCAAGCGACTGGGACCCGTCGTCTATCCCACACAGCAGG
CCAATCAGCCGCAACCCTCGCAGTATTACTACCAGGAGGCTACGCCCACC
GGGGCACCCAAGCCGAGTCCCATTCCCAAGCAGTACCACCGATCCAAGCA
CTACAAGCTGGCTTCACCCGCTAAGGCATTGCTCTATGCCGATTATGAAC
GTCAGGGATCGCCATCTCCACCGCCGCCATCCAACTTCTATCCCAGTCCG
CCGGATCCGCTAAAGCATTCCCAGAGAAATCTAGCCGTGACACCCACTGC
TCTGCCGCTGCACGCTGAATATCCCTCACCGTCTCCATCGCAGTCCAGTA
TCTATGTGTCCCAGGGAACTGGAATTGCCACACCATCCCGGCCCACACCC
ACTACAGCTCCTATTCAGAAGCTACGGACTCTGGATGAAGTGAAGCAATT
GAATCTGCCGCCTCCCAATGGCAAGCCACTGACCCAGGCCGAATTCCAAG
CTCTTGTGGACGCGGGATATCCAGTGAAGGCAGTGCCCGTGCCAGTTCCC
GTTCCGTATGAGCAGTACGTTAAGGATCATCCGGAGTACCGCAATCACCC
GCCTGTAGACTACGCTCACATCATGCGCCTGGCCACGCGGCAATTGGCTG
CACATCAGCAACACAGATCGCTGGCCGCTCCCTCGGAGCCGTCGGTCAAG
ATCCTGTCCACTCCTTCCGCCGGAGAGCTGCATCAGCAAACGGCCACAGG
CATCGGCGGCGGTAGTATCACGTATTTGCAACCCATCGAGGGTCAATCCC
ATCCCCATGCCCTGGCCCATGTCCATGCGTTGCAGAAGAGGAGACCGCGT
GATGAGCAGGATACCGCCGTGGCGGGCAGCGAGCCCAAGGCGGCAGCTCC
GGAGGCGGAGTCTGCGAAGGCGAAGGTGCAGTAAAAGCTTTCTAGACCAT

BS17888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG34382-RE 2418 CG34382-PE 1..2418 17..2434 12090 100 Plus
CG34382-RC 2418 CG34382-PC 1..2418 17..2434 12090 100 Plus
CG34382-RF 2412 CG34382-PF 1..2412 17..2434 11965 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG34382-RE 2864 CG34382-RE 329..2747 17..2435 12095 100 Plus
CG34382-RC 3091 CG34382-RC 556..2974 17..2435 12095 100 Plus
CG34382-RF 2858 CG34382-RF 329..2741 17..2435 11970 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9882676..9884376 735..2435 8505 100 Plus
3L 28110227 3L 9880205..9880576 53..424 1860 100 Plus
3L 28110227 3L 9882300..9882616 420..736 1585 100 Plus
3L 28110227 3L 9879540..9879577 17..54 190 100 Plus
Blast to na_te.dros performed 2014-11-28 02:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..7132 596..994 319 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2424 804..899 300 79.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2682 783..1127 300 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2653 596..914 274 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2856 596..1127 206 53.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..7092 543..900 203 53.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6526..6899 830..1210 184 54.6 Plus
roo 9092 roo DM_ROO 9092bp 1065..1160 543..638 164 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6533..6827 866..1151 159 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..3031 608..888 154 54.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6792..6947 1041..1199 149 56 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2406 1054..1151 147 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2411 1066..1174 142 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6888 1054..1205 141 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2445 1054..1151 139 60.2 Plus
roo 9092 roo DM_ROO 9092bp 1087..1144 1054..1111 137 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6872 1063..1219 135 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2433 1063..1126 133 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6461..6788 806..1151 125 54.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6790..6924 1063..1197 125 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1587 1063..1109 118 72.3 Plus
roo 9092 roo DM_ROO 9092bp 1085..1154 596..665 116 62.9 Plus

BS17888.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:44 Download gff for BS17888.complete
Subject Subject Range Query Range Percent Splice Strand
CG34382-RC 556..2971 17..2432 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:20 Download gff for BS17888.complete
Subject Subject Range Query Range Percent Splice Strand
CG34382-RC 556..2971 17..2432 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:34 Download gff for BS17888.complete
Subject Subject Range Query Range Percent Splice Strand
CG34382-RC 556..2971 17..2432 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:56 Download gff for BS17888.complete
Subject Subject Range Query Range Percent Splice Strand
CG34382-RC 556..2971 17..2432 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:56 Download gff for BS17888.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9879540..9879576 17..53 100 -> Plus
3L 9880206..9880573 54..421 100 -> Plus
3L 9882302..9882616 422..736 100 -> Plus
3L 9882678..9884373 737..2432 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:20 Download gff for BS17888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9872640..9872676 17..53 100 -> Plus
arm_3L 9873306..9873673 54..421 100 -> Plus
arm_3L 9875402..9875716 422..736 100 -> Plus
arm_3L 9875778..9877473 737..2432 100   Plus

BS17888.3prime Sequence

867 bp (784 high quality bases) assembled on 2007-05-30

> BS17888.3prime
ATGGTCTAGAAAGCTTTTACTGCTCCTTCGCCTTCGCAGACTCCGCCTCC
GGAGCTGCCGCCTTGGGCTCGCTGCCCGCCACGGCGGTATCCTGCTCATC
ACGCGGTCTCCTCTTCTGCAACGCATGGACATGGGCCAGGGCATGGGGAT
GGGATTGACCCTCGATGGGTTGCAAATACGTGATACTACCGCCGCCGATG
CCTGTGGCCGTTTGCTGATGCAGCTCTCCGGCGGAAGGAGTGGACAGGAT
CTTGACCGACGGCTCCGAGGGAGCGGCCAGCGATCTGTGTTGCTGATGTG
CAGCCAATTGCCGCGTGGCCAGGCGCATGATGTGAGCGTAGTCTACAGGC
GGGTGATTGCGGTACTCCGGATGATCCTTAACGTACTGCTCATACGGAAC
GGGAACTGGCACGGGCACTGCCTTCACTGGATATCCCGCGTCCACAAGAG
CTTGGAATTCGGCCTGGGTCAGTGGCTTGCCATTGGGAGGCGGCAGATTC
AATTGCTTCACTTCATCCAGAGTCCGTAGCTTCTGAATAGGAGCTGTAGT
GGGTGTGGGCCGGGATGGTGTGGCAATTCCAGTTCCCTGGGACACATAGA
TACTGGACTGCGATGGAGACGGTGAGGGATATTCAGCGTGCAGCGGCAGA
GCAGTGGGTGTCACGGCTAGATTTCTCTGGGAATGCTTTAGCGGATCCGG
CGGACTGGGATAGAAGTTGGATGGCGGCGGTGGAGATGGCGATCCCTGAC
GTTCATAATCGGCATAGAGCAATGCCTTAGCGGGTGAAGCCAGCTTGTAG
TGCTTGGATCGGTGGTACTGCTTGGGAATGGGACTCGGCTTGGGTGCCCC
GGTGGGCGTAGCCTCCT

BS17888.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14165-PA 1983 CG14165-RA 1133..1983 867..17 4230 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG34382-RF 2858 CG34382-RF 1890..2741 867..16 4245 99.9 Minus
CG34382-RE 2864 CG34382-RE 1896..2747 867..16 4245 99.9 Minus
CG34382-RD 3085 CG34382-RD 2117..2968 867..16 4245 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9883525..9884376 867..16 4245 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 10:37:29 has no hits.

BS17888.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:51 Download gff for BS17888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14165-PA 1133..1983 17..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:15 Download gff for BS17888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG34382-RD 2117..2968 16..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:52 Download gff for BS17888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG34382-RD 2117..2968 16..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:52 Download gff for BS17888.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9883525..9884376 16..867 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:15 Download gff for BS17888.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9876625..9877476 16..867 99   Minus

BS17888.5prime Sequence

846 bp (700 high quality bases) assembled on 2007-05-30

> BS17888.5prime
GAAGTTATCACTCGACATGAGAATCCAAATCTTGCTCCTGACACTCTTGC
TGGGCCTCGTCTGCGCCCAGGCCGTGGATGCGGAGGCCAAGAGCAGCCAA
GCCAAGCCAGCGGAAGACAGCAAGAGCTCCGCCTCCACGCCACTGGAATC
GGAGGCGACCAAAGACAAGCGACAAGTGAGCTCCAAGGAGACGTCTCTGT
ACCCCAACCACCGCAGCTCGGCGGCATCGTCAAGCGCCAACGATGATCCC
GAGGATGGTCAGGAAACCATCTACGGCTCCAAGCCGAATCAGTTCATCAT
TCGCCCCATTGCACCGCACCAGCATCAGCAGCACGAATCGCACCAGGAGC
CGCAGTTGAGGAACTTTGCGGCGGCCAATTCTCGACCCCATGCCGCCCAA
CTTCTCGAGCAGAGTCAGGAGGTGCAGCACTACGTGTATCTGCAAGATAT
AATGCGCCATCATCAGCCCAAGGCCCTGCTGGCCGCAGGTCAAGGCAAGG
GTGCGGCCAGTGCGCCCAAGAAGTCATCCACTCCGGTGGCCGAGGAGGAG
CAGGAGCAGGAACAGGAGGCGGAACAGCGATACGCGGTGTCCATTCAGCC
GCAGCCGCAGCAACAGCTCCAGCTCCAGCAACCACGTCCACGTCAGTACC
AGGGTCCCTATCAACTGCCATTGCCGCTGCCTGCTCCACAGCATCGATCG
GTGAATCCCCAGCAGCAGCAGCAGCAACATCAGCAGCCCTACCAAGTGAT
TCCCGAAGAGCAGTTTCTTAAGATCCTGGAGGAGGAGCTGCAGGCTAGAG
CCTATCATGAGCAACTTCGTCAGCAGCAGCAGCATCAACAGCAGCA

BS17888.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14166-PA 486 CG14166-RA 1..405 17..421 2025 100 Plus
CG14165-PA 1983 CG14165-RA 1..395 452..846 1975 100 Plus
CG33962-PA 882 Cp7Fa-RA 601..627 539..565 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG34382-RE 2864 CG34382-RE 329..1158 17..846 4150 100 Plus
CG34382-RC 3091 CG34382-RC 556..1385 17..846 4150 100 Plus
CG34382-RF 2858 CG34382-RF 329..1152 17..846 4050 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9880205..9880576 53..424 1860 100 Plus
3L 28110227 3L 9882300..9882616 420..736 1585 100 Plus
3L 28110227 3L 9882676..9882787 735..846 560 100 Plus
3L 28110227 3L 9879540..9879577 17..54 190 100 Plus
Blast to na_te.dros performed 2015-02-10 22:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2644 543..846 252 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6950 596..818 242 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6923 543..725 210 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2524 628..846 202 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6867 710..846 180 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2478 596..737 179 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6890 596..737 171 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2468 596..745 167 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2482 710..846 164 59.9 Plus
roo 9092 roo DM_ROO 9092bp 1065..1160 543..638 164 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6912 660..846 162 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2431 712..846 159 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6691..6852 688..846 153 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6891 710..846 152 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2596..2830 597..846 142 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2989 608..846 142 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6762 803..846 139 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6804 776..846 138 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2374 804..846 134 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6783 804..846 134 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1539..1579 806..846 133 80.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6819 756..846 132 63.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2416 776..846 130 70.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2371 804..846 125 76.7 Plus
roo 9092 roo DM_ROO 9092bp 1098..1134 810..846 122 81.1 Plus
roo 9092 roo DM_ROO 9092bp 1016..1089 772..846 120 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1540..1582 804..846 116 74.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2353 804..846 116 74.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2335..2377 804..846 116 74.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2344..2386 804..846 116 74.4 Plus
roo 9092 roo DM_ROO 9092bp 1040..1122 761..846 116 62.8 Plus
roo 9092 roo DM_ROO 9092bp 1085..1154 596..665 116 62.9 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3278..3319 805..846 111 73.8 Plus
roo 9092 roo DM_ROO 9092bp 1068..1143 771..846 110 60.5 Plus
TART-C 11124 TART-C TARTC 11124bp 9159..9203 801..845 108 71.1 Plus

BS17888.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:56 Download gff for BS17888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14166-PA 1..413 17..429 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:29 Download gff for BS17888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34382-RC 550..1384 9..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:02 Download gff for BS17888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34382-RC 550..1384 9..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:02 Download gff for BS17888.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9879534..9879576 9..53 93 -> Plus
3L 9880206..9880573 54..421 100 -> Plus
3L 9882302..9882616 422..736 100 -> Plus
3L 9882678..9882786 737..845 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:29 Download gff for BS17888.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9872634..9872676 9..53 93 -> Plus
arm_3L 9873306..9873673 54..421 100 -> Plus
arm_3L 9875402..9875716 422..736 100 -> Plus
arm_3L 9875778..9875886 737..845 100   Plus

BS17888.pep Sequence

Translation from 16 to 2433

> BS17888.pep
MRIQILLLTLLLGLVCAQAVDAEAKSSQAKPAEDSKSSASTPLESEATKD
KRQVSSKETSLYPNHRSSAASSSANDDPEDGQETIYGSKPNQFIIRPIAP
HQHQQHESHQEPQLRNFAAANSRPHAAQLLEQSQEVQHYVYLQDIMRHHQ
PKALLAAGQGKGAASAPKKSSTPVAEEEQEQEQEAEQRYAVSIQPQPQQQ
LQLQQPRPRQYQGPYQLPLPLPAPQHRSVNPQQQQQQHQQPYQVIPEEQF
LKILEEELQARAYHEQLRQQQQHQQQQQQQQQHQQQQQQQHHKQLPIHST
AATHKVLQQADPSLGLGGYRERFVAEQELVTPTYSHPRGGPKYLPLPQAQ
QIQEDDEQQQQQPQRVQLHKPIPHPGQQLIHGLPPQIAYYQPQISYKTLP
NHPLAKSSLESEIEKLLAANKPGQSLAYVDSSNEQVATRQPAPQHPPPPT
SHPALRQPKAYLASTPNSLLDANNQPFVPSLFKFSNYQQPTPIYPTPEPK
RLGPVVYPTQQANQPQPSQYYYQEATPTGAPKPSPIPKQYHRSKHYKLAS
PAKALLYADYERQGSPSPPPPSNFYPSPPDPLKHSQRNLAVTPTALPLHA
EYPSPSPSQSSIYVSQGTGIATPSRPTPTTAPIQKLRTLDEVKQLNLPPP
NGKPLTQAEFQALVDAGYPVKAVPVPVPVPYEQYVKDHPEYRNHPPVDYA
HIMRLATRQLAAHQQHRSLAAPSEPSVKILSTPSAGELHQQTATGIGGGS
ITYLQPIEGQSHPHALAHVHALQKRRPRDEQDTAVAGSEPKAAAPEAESA
KAKVQ*

BS17888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG34382-PE 805 CG34382-PE 1..805 1..805 4234 100 Plus
CG34382-PC 805 CG34382-PC 1..805 1..805 4234 100 Plus
CG34382-PF 803 CG34382-PF 1..803 1..805 4212 99.8 Plus
CG34382-PD 803 CG34382-PD 1..803 1..805 4212 99.8 Plus
CG6026-PB 1555 CG6026-PB 385..1065 196..801 263 24.5 Plus