Clone Sequence Records
BS17888.complete Sequence
2450 bp assembled on 2009-12-07
GenBank Submission: KX806091
> BS17888.complete
GAAGTTATCAGTCGACATGAGAATCCAAATCTTGCTCCTGACACTCTTGC
TGGGCCTCGTCTGCGCCCAGGCCGTGGATGCGGAGGCCAAGAGCAGCCAA
GCCAAGCCAGCGGAAGACAGCAAGAGCTCCGCCTCCACGCCACTGGAATC
GGAGGCGACCAAAGACAAGCGACAAGTGAGCTCCAAGGAGACGTCTCTGT
ACCCCAACCACCGCAGCTCGGCGGCATCGTCAAGCGCCAACGATGATCCC
GAGGATGGTCAGGAAACCATCTACGGCTCCAAGCCGAATCAGTTCATCAT
TCGCCCCATTGCACCGCACCAGCATCAGCAGCACGAATCGCACCAGGAGC
CGCAGTTGAGGAACTTTGCGGCGGCCAATTCTCGACCCCATGCCGCCCAA
CTTCTCGAGCAGAGTCAGGAGGTGCAGCACTACGTGTATCTGCAAGATAT
AATGCGCCATCATCAGCCCAAGGCCCTGCTGGCCGCAGGTCAAGGCAAGG
GTGCGGCCAGTGCGCCCAAGAAGTCATCCACTCCGGTGGCCGAGGAGGAG
CAGGAGCAGGAACAGGAGGCGGAACAGCGATACGCGGTGTCCATTCAGCC
GCAGCCGCAGCAACAGCTCCAGCTCCAGCAACCACGTCCACGTCAGTACC
AGGGTCCCTATCAACTGCCATTGCCGCTGCCTGCTCCACAGCATCGATCG
GTGAATCCCCAGCAGCAGCAGCAGCAACATCAGCAGCCCTACCAAGTGAT
TCCCGAAGAGCAGTTTCTTAAGATCCTGGAGGAGGAGCTGCAGGCTAGAG
CCTATCATGAGCAACTTCGTCAGCAGCAGCAGCATCAACAGCAGCAGCAG
CAGCAGCAGCAACACCAACAGCAGCAGCAGCAACAGCACCACAAGCAACT
GCCCATCCACAGCACGGCTGCCACTCACAAAGTGTTGCAGCAGGCGGATC
CCTCGCTAGGATTAGGCGGCTATCGCGAGCGTTTTGTGGCCGAGCAGGAG
CTGGTGACACCAACTTATTCGCATCCCCGCGGTGGTCCCAAATATCTGCC
CTTGCCACAGGCGCAGCAAATCCAAGAGGATGATGAGCAACAACAGCAAC
AACCGCAGCGGGTGCAGCTCCACAAACCGATACCGCATCCCGGGCAGCAA
CTCATCCATGGACTGCCACCCCAGATTGCCTACTACCAGCCACAGATAAG
CTACAAGACCCTGCCCAACCATCCACTGGCGAAATCTTCTCTGGAAAGTG
AGATTGAGAAATTGCTGGCAGCCAATAAGCCAGGACAATCGTTGGCCTAC
GTTGACAGCAGCAATGAGCAGGTGGCGACAAGGCAGCCCGCTCCGCAGCA
CCCACCACCACCCACCTCGCATCCCGCGCTGAGGCAACCCAAGGCATACC
TGGCCAGTACGCCCAACTCCCTGCTGGATGCCAATAACCAACCGTTCGTT
CCATCGCTCTTCAAGTTCAGCAACTATCAGCAACCGACGCCAATTTATCC
CACGCCGGAACCCAAGCGACTGGGACCCGTCGTCTATCCCACACAGCAGG
CCAATCAGCCGCAACCCTCGCAGTATTACTACCAGGAGGCTACGCCCACC
GGGGCACCCAAGCCGAGTCCCATTCCCAAGCAGTACCACCGATCCAAGCA
CTACAAGCTGGCTTCACCCGCTAAGGCATTGCTCTATGCCGATTATGAAC
GTCAGGGATCGCCATCTCCACCGCCGCCATCCAACTTCTATCCCAGTCCG
CCGGATCCGCTAAAGCATTCCCAGAGAAATCTAGCCGTGACACCCACTGC
TCTGCCGCTGCACGCTGAATATCCCTCACCGTCTCCATCGCAGTCCAGTA
TCTATGTGTCCCAGGGAACTGGAATTGCCACACCATCCCGGCCCACACCC
ACTACAGCTCCTATTCAGAAGCTACGGACTCTGGATGAAGTGAAGCAATT
GAATCTGCCGCCTCCCAATGGCAAGCCACTGACCCAGGCCGAATTCCAAG
CTCTTGTGGACGCGGGATATCCAGTGAAGGCAGTGCCCGTGCCAGTTCCC
GTTCCGTATGAGCAGTACGTTAAGGATCATCCGGAGTACCGCAATCACCC
GCCTGTAGACTACGCTCACATCATGCGCCTGGCCACGCGGCAATTGGCTG
CACATCAGCAACACAGATCGCTGGCCGCTCCCTCGGAGCCGTCGGTCAAG
ATCCTGTCCACTCCTTCCGCCGGAGAGCTGCATCAGCAAACGGCCACAGG
CATCGGCGGCGGTAGTATCACGTATTTGCAACCCATCGAGGGTCAATCCC
ATCCCCATGCCCTGGCCCATGTCCATGCGTTGCAGAAGAGGAGACCGCGT
GATGAGCAGGATACCGCCGTGGCGGGCAGCGAGCCCAAGGCGGCAGCTCC
GGAGGCGGAGTCTGCGAAGGCGAAGGTGCAGTAAAAGCTTTCTAGACCAT
BS17888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34382-RE | 2418 | CG34382-PE | 1..2418 | 17..2434 | 12090 | 100 | Plus |
CG34382-RC | 2418 | CG34382-PC | 1..2418 | 17..2434 | 12090 | 100 | Plus |
CG34382-RF | 2412 | CG34382-PF | 1..2412 | 17..2434 | 11965 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34382-RE | 2864 | CG34382-RE | 329..2747 | 17..2435 | 12095 | 100 | Plus |
CG34382-RC | 3091 | CG34382-RC | 556..2974 | 17..2435 | 12095 | 100 | Plus |
CG34382-RF | 2858 | CG34382-RF | 329..2741 | 17..2435 | 11970 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9882676..9884376 | 735..2435 | 8505 | 100 | Plus |
3L | 28110227 | 3L | 9880205..9880576 | 53..424 | 1860 | 100 | Plus |
3L | 28110227 | 3L | 9882300..9882616 | 420..736 | 1585 | 100 | Plus |
3L | 28110227 | 3L | 9879540..9879577 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7132 | 596..994 | 319 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2424 | 804..899 | 300 | 79.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2682 | 783..1127 | 300 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2653 | 596..914 | 274 | 56.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2856 | 596..1127 | 206 | 53.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..7092 | 543..900 | 203 | 53.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6526..6899 | 830..1210 | 184 | 54.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1065..1160 | 543..638 | 164 | 66 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6827 | 866..1151 | 159 | 54.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..3031 | 608..888 | 154 | 54.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6947 | 1041..1199 | 149 | 56 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2406 | 1054..1151 | 147 | 62.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2411 | 1066..1174 | 142 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6888 | 1054..1205 | 141 | 55.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2445 | 1054..1151 | 139 | 60.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1087..1144 | 1054..1111 | 137 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6872 | 1063..1219 | 135 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2433 | 1063..1126 | 133 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6461..6788 | 806..1151 | 125 | 54.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6924 | 1063..1197 | 125 | 56.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1587 | 1063..1109 | 118 | 72.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1085..1154 | 596..665 | 116 | 62.9 | Plus |
BS17888.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:44 Download gff for
BS17888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34382-RC | 556..2971 | 17..2432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:20 Download gff for
BS17888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34382-RC | 556..2971 | 17..2432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:34 Download gff for
BS17888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34382-RC | 556..2971 | 17..2432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:56 Download gff for
BS17888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34382-RC | 556..2971 | 17..2432 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:56 Download gff for
BS17888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9879540..9879576 | 17..53 | 100 | -> | Plus |
3L | 9880206..9880573 | 54..421 | 100 | -> | Plus |
3L | 9882302..9882616 | 422..736 | 100 | -> | Plus |
3L | 9882678..9884373 | 737..2432 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:20 Download gff for
BS17888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9872640..9872676 | 17..53 | 100 | -> | Plus |
arm_3L | 9873306..9873673 | 54..421 | 100 | -> | Plus |
arm_3L | 9875402..9875716 | 422..736 | 100 | -> | Plus |
arm_3L | 9875778..9877473 | 737..2432 | 100 | | Plus |
BS17888.3prime Sequence
867 bp (784 high quality bases) assembled on 2007-05-30
> BS17888.3prime
ATGGTCTAGAAAGCTTTTACTGCTCCTTCGCCTTCGCAGACTCCGCCTCC
GGAGCTGCCGCCTTGGGCTCGCTGCCCGCCACGGCGGTATCCTGCTCATC
ACGCGGTCTCCTCTTCTGCAACGCATGGACATGGGCCAGGGCATGGGGAT
GGGATTGACCCTCGATGGGTTGCAAATACGTGATACTACCGCCGCCGATG
CCTGTGGCCGTTTGCTGATGCAGCTCTCCGGCGGAAGGAGTGGACAGGAT
CTTGACCGACGGCTCCGAGGGAGCGGCCAGCGATCTGTGTTGCTGATGTG
CAGCCAATTGCCGCGTGGCCAGGCGCATGATGTGAGCGTAGTCTACAGGC
GGGTGATTGCGGTACTCCGGATGATCCTTAACGTACTGCTCATACGGAAC
GGGAACTGGCACGGGCACTGCCTTCACTGGATATCCCGCGTCCACAAGAG
CTTGGAATTCGGCCTGGGTCAGTGGCTTGCCATTGGGAGGCGGCAGATTC
AATTGCTTCACTTCATCCAGAGTCCGTAGCTTCTGAATAGGAGCTGTAGT
GGGTGTGGGCCGGGATGGTGTGGCAATTCCAGTTCCCTGGGACACATAGA
TACTGGACTGCGATGGAGACGGTGAGGGATATTCAGCGTGCAGCGGCAGA
GCAGTGGGTGTCACGGCTAGATTTCTCTGGGAATGCTTTAGCGGATCCGG
CGGACTGGGATAGAAGTTGGATGGCGGCGGTGGAGATGGCGATCCCTGAC
GTTCATAATCGGCATAGAGCAATGCCTTAGCGGGTGAAGCCAGCTTGTAG
TGCTTGGATCGGTGGTACTGCTTGGGAATGGGACTCGGCTTGGGTGCCCC
GGTGGGCGTAGCCTCCT
BS17888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14165-PA | 1983 | CG14165-RA | 1133..1983 | 867..17 | 4230 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34382-RF | 2858 | CG34382-RF | 1890..2741 | 867..16 | 4245 | 99.9 | Minus |
CG34382-RE | 2864 | CG34382-RE | 1896..2747 | 867..16 | 4245 | 99.9 | Minus |
CG34382-RD | 3085 | CG34382-RD | 2117..2968 | 867..16 | 4245 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9883525..9884376 | 867..16 | 4245 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:37:29 has no hits.
BS17888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:51 Download gff for
BS17888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14165-PA | 1133..1983 | 17..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:15 Download gff for
BS17888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34382-RD | 2117..2968 | 16..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:52 Download gff for
BS17888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34382-RD | 2117..2968 | 16..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:52 Download gff for
BS17888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9883525..9884376 | 16..867 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:15 Download gff for
BS17888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9876625..9877476 | 16..867 | 99 | | Minus |
BS17888.5prime Sequence
846 bp (700 high quality bases) assembled on 2007-05-30
> BS17888.5prime
GAAGTTATCACTCGACATGAGAATCCAAATCTTGCTCCTGACACTCTTGC
TGGGCCTCGTCTGCGCCCAGGCCGTGGATGCGGAGGCCAAGAGCAGCCAA
GCCAAGCCAGCGGAAGACAGCAAGAGCTCCGCCTCCACGCCACTGGAATC
GGAGGCGACCAAAGACAAGCGACAAGTGAGCTCCAAGGAGACGTCTCTGT
ACCCCAACCACCGCAGCTCGGCGGCATCGTCAAGCGCCAACGATGATCCC
GAGGATGGTCAGGAAACCATCTACGGCTCCAAGCCGAATCAGTTCATCAT
TCGCCCCATTGCACCGCACCAGCATCAGCAGCACGAATCGCACCAGGAGC
CGCAGTTGAGGAACTTTGCGGCGGCCAATTCTCGACCCCATGCCGCCCAA
CTTCTCGAGCAGAGTCAGGAGGTGCAGCACTACGTGTATCTGCAAGATAT
AATGCGCCATCATCAGCCCAAGGCCCTGCTGGCCGCAGGTCAAGGCAAGG
GTGCGGCCAGTGCGCCCAAGAAGTCATCCACTCCGGTGGCCGAGGAGGAG
CAGGAGCAGGAACAGGAGGCGGAACAGCGATACGCGGTGTCCATTCAGCC
GCAGCCGCAGCAACAGCTCCAGCTCCAGCAACCACGTCCACGTCAGTACC
AGGGTCCCTATCAACTGCCATTGCCGCTGCCTGCTCCACAGCATCGATCG
GTGAATCCCCAGCAGCAGCAGCAGCAACATCAGCAGCCCTACCAAGTGAT
TCCCGAAGAGCAGTTTCTTAAGATCCTGGAGGAGGAGCTGCAGGCTAGAG
CCTATCATGAGCAACTTCGTCAGCAGCAGCAGCATCAACAGCAGCA
BS17888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14166-PA | 486 | CG14166-RA | 1..405 | 17..421 | 2025 | 100 | Plus |
CG14165-PA | 1983 | CG14165-RA | 1..395 | 452..846 | 1975 | 100 | Plus |
CG33962-PA | 882 | Cp7Fa-RA | 601..627 | 539..565 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34382-RE | 2864 | CG34382-RE | 329..1158 | 17..846 | 4150 | 100 | Plus |
CG34382-RC | 3091 | CG34382-RC | 556..1385 | 17..846 | 4150 | 100 | Plus |
CG34382-RF | 2858 | CG34382-RF | 329..1152 | 17..846 | 4050 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9880205..9880576 | 53..424 | 1860 | 100 | Plus |
3L | 28110227 | 3L | 9882300..9882616 | 420..736 | 1585 | 100 | Plus |
3L | 28110227 | 3L | 9882676..9882787 | 735..846 | 560 | 100 | Plus |
3L | 28110227 | 3L | 9879540..9879577 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2644 | 543..846 | 252 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6950 | 596..818 | 242 | 58.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6923 | 543..725 | 210 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2524 | 628..846 | 202 | 57 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6867 | 710..846 | 180 | 62 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2478 | 596..737 | 179 | 58.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6890 | 596..737 | 171 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2468 | 596..745 | 167 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2482 | 710..846 | 164 | 59.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1065..1160 | 543..638 | 164 | 66 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6912 | 660..846 | 162 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2431 | 712..846 | 159 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6852 | 688..846 | 153 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6891 | 710..846 | 152 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2830 | 597..846 | 142 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2989 | 608..846 | 142 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6762 | 803..846 | 139 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6804 | 776..846 | 138 | 69.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2374 | 804..846 | 134 | 79.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6783 | 804..846 | 134 | 79.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1579 | 806..846 | 133 | 80.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6819 | 756..846 | 132 | 63.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2416 | 776..846 | 130 | 70.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2371 | 804..846 | 125 | 76.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1098..1134 | 810..846 | 122 | 81.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1016..1089 | 772..846 | 120 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1540..1582 | 804..846 | 116 | 74.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2353 | 804..846 | 116 | 74.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2377 | 804..846 | 116 | 74.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2386 | 804..846 | 116 | 74.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1040..1122 | 761..846 | 116 | 62.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1085..1154 | 596..665 | 116 | 62.9 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3278..3319 | 805..846 | 111 | 73.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1068..1143 | 771..846 | 110 | 60.5 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9159..9203 | 801..845 | 108 | 71.1 | Plus |
BS17888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:45:56 Download gff for
BS17888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14166-PA | 1..413 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:29 Download gff for
BS17888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34382-RC | 550..1384 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:02 Download gff for
BS17888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34382-RC | 550..1384 | 9..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:02 Download gff for
BS17888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9879534..9879576 | 9..53 | 93 | -> | Plus |
3L | 9880206..9880573 | 54..421 | 100 | -> | Plus |
3L | 9882302..9882616 | 422..736 | 100 | -> | Plus |
3L | 9882678..9882786 | 737..845 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:29 Download gff for
BS17888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9872634..9872676 | 9..53 | 93 | -> | Plus |
arm_3L | 9873306..9873673 | 54..421 | 100 | -> | Plus |
arm_3L | 9875402..9875716 | 422..736 | 100 | -> | Plus |
arm_3L | 9875778..9875886 | 737..845 | 100 | | Plus |
BS17888.pep Sequence
Translation from 16 to 2433
> BS17888.pep
MRIQILLLTLLLGLVCAQAVDAEAKSSQAKPAEDSKSSASTPLESEATKD
KRQVSSKETSLYPNHRSSAASSSANDDPEDGQETIYGSKPNQFIIRPIAP
HQHQQHESHQEPQLRNFAAANSRPHAAQLLEQSQEVQHYVYLQDIMRHHQ
PKALLAAGQGKGAASAPKKSSTPVAEEEQEQEQEAEQRYAVSIQPQPQQQ
LQLQQPRPRQYQGPYQLPLPLPAPQHRSVNPQQQQQQHQQPYQVIPEEQF
LKILEEELQARAYHEQLRQQQQHQQQQQQQQQHQQQQQQQHHKQLPIHST
AATHKVLQQADPSLGLGGYRERFVAEQELVTPTYSHPRGGPKYLPLPQAQ
QIQEDDEQQQQQPQRVQLHKPIPHPGQQLIHGLPPQIAYYQPQISYKTLP
NHPLAKSSLESEIEKLLAANKPGQSLAYVDSSNEQVATRQPAPQHPPPPT
SHPALRQPKAYLASTPNSLLDANNQPFVPSLFKFSNYQQPTPIYPTPEPK
RLGPVVYPTQQANQPQPSQYYYQEATPTGAPKPSPIPKQYHRSKHYKLAS
PAKALLYADYERQGSPSPPPPSNFYPSPPDPLKHSQRNLAVTPTALPLHA
EYPSPSPSQSSIYVSQGTGIATPSRPTPTTAPIQKLRTLDEVKQLNLPPP
NGKPLTQAEFQALVDAGYPVKAVPVPVPVPYEQYVKDHPEYRNHPPVDYA
HIMRLATRQLAAHQQHRSLAAPSEPSVKILSTPSAGELHQQTATGIGGGS
ITYLQPIEGQSHPHALAHVHALQKRRPRDEQDTAVAGSEPKAAAPEAESA
KAKVQ*
BS17888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34382-PE | 805 | CG34382-PE | 1..805 | 1..805 | 4234 | 100 | Plus |
CG34382-PC | 805 | CG34382-PC | 1..805 | 1..805 | 4234 | 100 | Plus |
CG34382-PF | 803 | CG34382-PF | 1..803 | 1..805 | 4212 | 99.8 | Plus |
CG34382-PD | 803 | CG34382-PD | 1..803 | 1..805 | 4212 | 99.8 | Plus |
CG6026-PB | 1555 | CG6026-PB | 385..1065 | 196..801 | 263 | 24.5 | Plus |