Clone BS17891 Report

Search the DGRC for BS17891

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG12236-RA
Protein status:BS17891.pep: full length peptide match
Sequenced Size:1694

Clone Sequence Records

BS17891.complete Sequence

1694 bp assembled on 2009-12-07

GenBank Submission: KX802770

> BS17891.complete
GAAGTTATCAGTCGACATGGCCACCACCCAGCAGTACTCGCTGCGGTGGA
ACAACTACCTGCGCCACCTCACCTACTCCCTGGACAACCACCGGCTGAAC
GATGACTTCGTGGACGTCAGCCTGTGCGTGGATGGACGCAGGATCAAGGC
CCACAAGGTGGTACTCTCCTCCTGCTCGTCCTACTTTAAGGAGATATTCA
AGGAGAACCCACATCCGCATCCAGTCATTATATTTAAGTTTATCAAGTTC
GAGGATCTCAATTCGATTATCGAGTTCATGTACCAGGGCGAAGTCAATGT
GCAGCAGGAGGCGCTGCAATCGTTCCTGCAAACTGCCGAGCTGCTGGCCG
TCCAAGGACTCACCGCCGAGGAGAAGGAGAAGCCGCAGATCCCGGTGGCG
CCGCTGATCAGCGAGCACAAGCTGATCAAGACCATACCGAGCACCATACG
CGCGGTCAACGAGCAGCAGCAGCAGGTGTCCAATGTGGCCCAGGCGCAGA
CAGCTACGCAAACCATCGAAATACCCGCGGCCACTTTGCTGCAAGCCACC
AACGCCAGCCAGGTGCCATCGCAGGTGGTCGCAGCAGCCGCAGCAGCCGC
AGCGGCACAACAGCTGCAGGTCCAGCATCAACAGCAGCAGCATCACCATG
TACAAACCACCCAGATTCAGCACATCCAAGTGCAATCGGCACCGCCCCCG
CAACAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACAGCAGCAGCAGCAGCAATCACAGCAGCAACAAACGACGCCCGTGC
AGACGCAACACCTGACCATCACCAATGCGGTGGCCCTGCCGGCGGCCAGT
TCGGTTAAGAAGCGAAAGATCACGTTCTCGGACGACGACGACAACATGTA
CACCACCGAAACCGTTGACTACGCCGTCAAGGATGAGCAGACCATAGTGA
AAACTGCCGAGATGACTTTCCTGCGCGGCGCCGTCAAGATGGACATACCC
GATTACATTGTTGGCGAAGTGGATGACCGCCTGTCGGATGGAGCAACGCC
GCAAACGTCGCAGGATGCCACCACCGCAGCGGCGCAGAATGTGGCGCAGT
ACTCATCCGAGTATGAAATACTCACCGAGTCCGAAATGGAGGAGAAGTAC
CAGGCGGATGCGGACAACGCCGAAATTGCCATTGAGATGACCCGATTGCT
GGGCACCGCCAGCGGGACGCCGGGTGCGGGTTCCGGCCAAGTGATGGAGG
ATTCGGGTGGCGGCAGCGCGACGACTGGTCCCTCGACTACGGTGTCTGTG
ACGCAGGTCAAATCGGACAGCAAGGCCAGCGGGACGAATGCCGCTTTGAA
GCCAGGATCCGTGACGGTTGCCAGGTCGTCCAAGAGTGGAGCAACTGCAT
CCGCGCCACCGGCTGGCAGCGATGAGGAGAGCGTCCAGTATACCGGCCTC
GCACCGCTGAACTGCAGCTTCTGCGGCAGGCCGCTCAAGTCGGTGAACGC
GCTGCGGCGACACATCGCCTCCAGGCATTCGGAGATTCAGGGCAAGGAGC
ACGAGTGCTTCATCTGCATGAAGAGCTTCAAGACAAAGTGGTCCCTCTCC
ACACACAACTCGCGTTTTCATCGCGAAATGGGCTGTTCGACCAAGGGATT
CACCAAGATCGAGTACAGCGATCACTGAAAGCTTTCTAGACCAT

BS17891.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-RA 1662 CG12236-PA 1..1662 17..1678 8310 100 Plus
CG12236-RB 1533 CG12236-PB 1..1324 17..1340 6620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-RA 2335 CG12236-RA 358..2019 17..1678 8310 100 Plus
CG12236-RB 3038 CG12236-RB 358..1681 17..1340 6620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5908869..5909537 285..953 3345 100 Plus
X 23542271 X 5912425..5912763 1340..1678 1695 100 Plus
X 23542271 X 5908492..5908762 17..287 1355 100 Plus
X 23542271 X 5909613..5909849 954..1190 1185 100 Plus
X 23542271 X 5909912..5910061 1191..1340 750 100 Plus
Blast to na_te.dros performed 2014-11-28 02:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 2031..2066 422..388 114 83.3 Minus

BS17891.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:56 Download gff for BS17891.complete
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 368..2028 17..1677 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:05 Download gff for BS17891.complete
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 368..2028 17..1677 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:19 Download gff for BS17891.complete
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 368..2028 17..1677 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:17 Download gff for BS17891.complete
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 358..2018 17..1677 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:17 Download gff for BS17891.complete
Subject Subject Range Query Range Percent Splice Strand
X 5908492..5908761 17..286 100 -> Plus
X 5909613..5909849 954..1190 100 -> Plus
X 5909912..5910061 1191..1340 100 -> Plus
X 5908871..5909537 287..953 100 -> Plus
X 5912426..5912762 1341..1677 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:05 Download gff for BS17891.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5806459..5806795 1341..1677 100   Plus
arm_X 5802525..5802794 17..286 100 -> Plus
arm_X 5802904..5803570 287..953 100 -> Plus
arm_X 5803646..5803882 954..1190 100 -> Plus
arm_X 5803945..5804094 1191..1340 100 -> Plus

BS17891.3prime Sequence

722 bp (719 high quality bases) assembled on 2007-05-30

> BS17891.3prime
ATGGTCTAGAAAGCTTTCAGCCTTCGCTGTACTCGATCTTGGTGAATCCC
TTGGTCGAACAGCCCATTTCGCGATGAAAACGCGAGTTGTGTGTGGAGAG
GGACCACTTTGTCTTGAAGCTCTTCATGCAGATGAAGCACTCGTGCTCCT
TGCCCTGAATCTCCGAATGCCTGGAGGCGATGTGTCGCCGCAGCGCGTTC
ACCGACTTGAGCGGCCTGCCGCAGAAGCTGCAGTTCAGCGGTGCGAGGCC
GGTATACTGGACGCTCTCCTCATCGCTGCCAGCCGGTGGCGCGGATGCAG
TTGCTCCACTCTTGGACGACCTGGCAACCGTCACGGATCCTGGCTTCAAA
GCGGCATTCGTCCCGCTGGCCTTGCTGTCCGATTTGACCTGCGTCACAGA
CACCGTAGTCGAGGGACCAGTCGTCGCGCTGCCGCCACCCGAATCCTCCA
TCACTTGGCCGGAACCCGCACCCGGCGTCCCGCTGGCGGTGCCCAGCAAT
CGGGTCATCTCAATGGCAATTTCGGCGTTGTCCGCATCCGCCTGGTACTT
CTCCTCCATTTCGGACTCGGTGAGTATTTCATACTCGGATGAGTACTGCG
CCACATTCTGCGCCGCTGCGGTGGTGGCATCCTGCGACGTTTGCGGCGTT
GCTCCATCCGACAGGCGGTCATCCACTTCGCCAACAATGTAATCGGGTAT
GTCCATCTTGACGGCGCCGCGC

BS17891.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-PA 1662 CG12236-RA 957..1655 722..24 3495 100 Minus
CG12236-PB 1533 CG12236-RB 957..1324 722..355 1840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-RA 2335 CG12236-RA 1314..2012 722..24 3495 100 Minus
CG12236-RB 3038 CG12236-RB 1314..1681 722..355 1840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5912425..5912756 355..24 1660 100 Minus
X 23542271 X 5909632..5909849 722..505 1090 100 Minus
X 23542271 X 5909912..5910061 504..355 750 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:45:26 has no hits.

BS17891.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:14 Download gff for BS17891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12236-PA 957..1662 17..722 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:24 Download gff for BS17891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 1324..2029 17..722 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:26:13 Download gff for BS17891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 1314..2019 17..722 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:26:13 Download gff for BS17891.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5909632..5909849 505..722 100 -> Minus
X 5909912..5910061 355..504 100 -> Minus
X 5912426..5912763 17..354 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:24 Download gff for BS17891.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5803665..5803882 505..722 100 -> Minus
arm_X 5803945..5804094 355..504 100 -> Minus
arm_X 5806459..5806796 17..354 99   Minus

BS17891.5prime Sequence

852 bp (799 high quality bases) assembled on 2007-05-30

> BS17891.5prime
GAAGTTATCAGTCGACATGGCCACCACCCAGCAGTACTCGCTGCGGTGGA
ACAACTACCTGCGCCACCTCACCTACTCCCTGGACAACCACCGGCTGAAC
GATGACTTCGTGGACGTCAGCCTGTGCGTGGATGGACGCAGGATCAAGGC
CCACAAGGTGGTACTCTCCTCCTGCTCGTCCTACTTTAAGGAGATATTCA
AGGAGAACCCACATCCGCATCCAGTCATTATATTTAAGTTTATCAAGTTC
GAGGATCTCAATTCGATTATCGAGTTCATGTACCAGGGCGAAGTCAATGT
GCAGCAGGAGGCGCTGCAATCGTTCCTGCAAACTGCCGAGCTGCTGGCCG
TCCAAGGACTCACCGCCGAGGAGAAGGAGAAGCCGCAGATCCCGGTGGCG
CCGCTGATCAGCGAGCACAAGCTGATCAAGACCATACCGAGCACCATACG
CGCGGTCAACGAGCAGCAGCAGCAGGTGTCCAATGTGGCCCAGGCGCAGA
CAGCTACGCAAACCATCGAAATACCCGCGGCCACTTTGCTGCAAGCCACC
AACGCCAGCCAGGTGCCATCGCAGGTGGTCGCAGCAGCCGCAGCAGCCGC
AGCGGCACAACAGCTGCAGGTCCAGCATCAACAGCAGCAGCATCACCATG
TACAAACCACCCAGATTCAGCACATCCAAGTGCAATCGGCACCGCCCCCG
CAACAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACAGCAGCAGCAGCAGCAATCACAGCAGCAACAAACGACGCCCGTGC
AGACGCAACACCTGACCATCACCCATGCGGTGGCCCTGCCGGCGGCCAGT
TC

BS17891.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-PA 1662 CG12236-RA 1..836 17..852 4155 99.8 Plus
CG12236-PB 1533 CG12236-RB 1..836 17..852 4155 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-RB 3038 CG12236-RB 358..1193 17..852 4165 99.9 Plus
CG12236-RA 2335 CG12236-RA 358..1193 17..852 4165 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5908869..5909436 285..852 2825 99.8 Plus
X 23542271 X 5908492..5908762 17..287 1355 100 Plus
Blast to na_te.dros performed 2015-02-13 06:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 2031..2066 422..388 114 83.3 Minus

BS17891.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:18 Download gff for BS17891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12236-PB 1..836 17..852 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:10:30 Download gff for BS17891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 368..1203 17..852 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:19 Download gff for BS17891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 358..1193 17..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:19 Download gff for BS17891.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5908492..5908761 17..286 100 -> Plus
X 5908871..5909436 287..852 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:10:30 Download gff for BS17891.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5802525..5802794 17..286 100 -> Plus
arm_X 5802904..5803469 287..852 99   Plus

BS17891.pep Sequence

Translation from 16 to 1677

> BS17891.pep
MATTQQYSLRWNNYLRHLTYSLDNHRLNDDFVDVSLCVDGRRIKAHKVVL
SSCSSYFKEIFKENPHPHPVIIFKFIKFEDLNSIIEFMYQGEVNVQQEAL
QSFLQTAELLAVQGLTAEEKEKPQIPVAPLISEHKLIKTIPSTIRAVNEQ
QQQVSNVAQAQTATQTIEIPAATLLQATNASQVPSQVVAAAAAAAAAQQL
QVQHQQQQHHHVQTTQIQHIQVQSAPPPQQQQQQQQQQQQQQQQQQQQQQ
QQSQQQQTTPVQTQHLTITNAVALPAASSVKKRKITFSDDDDNMYTTETV
DYAVKDEQTIVKTAEMTFLRGAVKMDIPDYIVGEVDDRLSDGATPQTSQD
ATTAAAQNVAQYSSEYEILTESEMEEKYQADADNAEIAIEMTRLLGTASG
TPGAGSGQVMEDSGGGSATTGPSTTVSVTQVKSDSKASGTNAALKPGSVT
VARSSKSGATASAPPAGSDEESVQYTGLAPLNCSFCGRPLKSVNALRRHI
ASRHSEIQGKEHECFICMKSFKTKWSLSTHNSRFHREMGCSTKGFTKIEY
SDH*

BS17891.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-PA 553 CG12236-PA 1..553 1..553 2810 100 Plus
CG12236-PB 510 CG12236-PB 1..502 1..537 2255 86.2 Plus
BtbVII-PE 743 CG43365-PE 2..258 3..284 402 35.7 Plus
BtbVII-PD 743 CG43365-PD 2..258 3..284 402 35.7 Plus
BtbVII-PB 743 CG11494-PB 2..258 3..284 402 35.7 Plus