Clone Sequence Records
BS17891.complete Sequence
1694 bp assembled on 2009-12-07
GenBank Submission: KX802770
> BS17891.complete
GAAGTTATCAGTCGACATGGCCACCACCCAGCAGTACTCGCTGCGGTGGA
ACAACTACCTGCGCCACCTCACCTACTCCCTGGACAACCACCGGCTGAAC
GATGACTTCGTGGACGTCAGCCTGTGCGTGGATGGACGCAGGATCAAGGC
CCACAAGGTGGTACTCTCCTCCTGCTCGTCCTACTTTAAGGAGATATTCA
AGGAGAACCCACATCCGCATCCAGTCATTATATTTAAGTTTATCAAGTTC
GAGGATCTCAATTCGATTATCGAGTTCATGTACCAGGGCGAAGTCAATGT
GCAGCAGGAGGCGCTGCAATCGTTCCTGCAAACTGCCGAGCTGCTGGCCG
TCCAAGGACTCACCGCCGAGGAGAAGGAGAAGCCGCAGATCCCGGTGGCG
CCGCTGATCAGCGAGCACAAGCTGATCAAGACCATACCGAGCACCATACG
CGCGGTCAACGAGCAGCAGCAGCAGGTGTCCAATGTGGCCCAGGCGCAGA
CAGCTACGCAAACCATCGAAATACCCGCGGCCACTTTGCTGCAAGCCACC
AACGCCAGCCAGGTGCCATCGCAGGTGGTCGCAGCAGCCGCAGCAGCCGC
AGCGGCACAACAGCTGCAGGTCCAGCATCAACAGCAGCAGCATCACCATG
TACAAACCACCCAGATTCAGCACATCCAAGTGCAATCGGCACCGCCCCCG
CAACAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACAGCAGCAGCAGCAGCAATCACAGCAGCAACAAACGACGCCCGTGC
AGACGCAACACCTGACCATCACCAATGCGGTGGCCCTGCCGGCGGCCAGT
TCGGTTAAGAAGCGAAAGATCACGTTCTCGGACGACGACGACAACATGTA
CACCACCGAAACCGTTGACTACGCCGTCAAGGATGAGCAGACCATAGTGA
AAACTGCCGAGATGACTTTCCTGCGCGGCGCCGTCAAGATGGACATACCC
GATTACATTGTTGGCGAAGTGGATGACCGCCTGTCGGATGGAGCAACGCC
GCAAACGTCGCAGGATGCCACCACCGCAGCGGCGCAGAATGTGGCGCAGT
ACTCATCCGAGTATGAAATACTCACCGAGTCCGAAATGGAGGAGAAGTAC
CAGGCGGATGCGGACAACGCCGAAATTGCCATTGAGATGACCCGATTGCT
GGGCACCGCCAGCGGGACGCCGGGTGCGGGTTCCGGCCAAGTGATGGAGG
ATTCGGGTGGCGGCAGCGCGACGACTGGTCCCTCGACTACGGTGTCTGTG
ACGCAGGTCAAATCGGACAGCAAGGCCAGCGGGACGAATGCCGCTTTGAA
GCCAGGATCCGTGACGGTTGCCAGGTCGTCCAAGAGTGGAGCAACTGCAT
CCGCGCCACCGGCTGGCAGCGATGAGGAGAGCGTCCAGTATACCGGCCTC
GCACCGCTGAACTGCAGCTTCTGCGGCAGGCCGCTCAAGTCGGTGAACGC
GCTGCGGCGACACATCGCCTCCAGGCATTCGGAGATTCAGGGCAAGGAGC
ACGAGTGCTTCATCTGCATGAAGAGCTTCAAGACAAAGTGGTCCCTCTCC
ACACACAACTCGCGTTTTCATCGCGAAATGGGCTGTTCGACCAAGGGATT
CACCAAGATCGAGTACAGCGATCACTGAAAGCTTTCTAGACCAT
BS17891.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12236-RA | 1662 | CG12236-PA | 1..1662 | 17..1678 | 8310 | 100 | Plus |
CG12236-RB | 1533 | CG12236-PB | 1..1324 | 17..1340 | 6620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12236-RA | 2335 | CG12236-RA | 358..2019 | 17..1678 | 8310 | 100 | Plus |
CG12236-RB | 3038 | CG12236-RB | 358..1681 | 17..1340 | 6620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5908869..5909537 | 285..953 | 3345 | 100 | Plus |
X | 23542271 | X | 5912425..5912763 | 1340..1678 | 1695 | 100 | Plus |
X | 23542271 | X | 5908492..5908762 | 17..287 | 1355 | 100 | Plus |
X | 23542271 | X | 5909613..5909849 | 954..1190 | 1185 | 100 | Plus |
X | 23542271 | X | 5909912..5910061 | 1191..1340 | 750 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 2031..2066 | 422..388 | 114 | 83.3 | Minus |
BS17891.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:56 Download gff for
BS17891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12236-RA | 368..2028 | 17..1677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:05 Download gff for
BS17891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12236-RA | 368..2028 | 17..1677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:19 Download gff for
BS17891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12236-RA | 368..2028 | 17..1677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:17 Download gff for
BS17891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12236-RA | 358..2018 | 17..1677 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:17 Download gff for
BS17891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5908492..5908761 | 17..286 | 100 | -> | Plus |
X | 5909613..5909849 | 954..1190 | 100 | -> | Plus |
X | 5909912..5910061 | 1191..1340 | 100 | -> | Plus |
X | 5908871..5909537 | 287..953 | 100 | -> | Plus |
X | 5912426..5912762 | 1341..1677 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:05 Download gff for
BS17891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5806459..5806795 | 1341..1677 | 100 | | Plus |
arm_X | 5802525..5802794 | 17..286 | 100 | -> | Plus |
arm_X | 5802904..5803570 | 287..953 | 100 | -> | Plus |
arm_X | 5803646..5803882 | 954..1190 | 100 | -> | Plus |
arm_X | 5803945..5804094 | 1191..1340 | 100 | -> | Plus |
BS17891.3prime Sequence
722 bp (719 high quality bases) assembled on 2007-05-30
> BS17891.3prime
ATGGTCTAGAAAGCTTTCAGCCTTCGCTGTACTCGATCTTGGTGAATCCC
TTGGTCGAACAGCCCATTTCGCGATGAAAACGCGAGTTGTGTGTGGAGAG
GGACCACTTTGTCTTGAAGCTCTTCATGCAGATGAAGCACTCGTGCTCCT
TGCCCTGAATCTCCGAATGCCTGGAGGCGATGTGTCGCCGCAGCGCGTTC
ACCGACTTGAGCGGCCTGCCGCAGAAGCTGCAGTTCAGCGGTGCGAGGCC
GGTATACTGGACGCTCTCCTCATCGCTGCCAGCCGGTGGCGCGGATGCAG
TTGCTCCACTCTTGGACGACCTGGCAACCGTCACGGATCCTGGCTTCAAA
GCGGCATTCGTCCCGCTGGCCTTGCTGTCCGATTTGACCTGCGTCACAGA
CACCGTAGTCGAGGGACCAGTCGTCGCGCTGCCGCCACCCGAATCCTCCA
TCACTTGGCCGGAACCCGCACCCGGCGTCCCGCTGGCGGTGCCCAGCAAT
CGGGTCATCTCAATGGCAATTTCGGCGTTGTCCGCATCCGCCTGGTACTT
CTCCTCCATTTCGGACTCGGTGAGTATTTCATACTCGGATGAGTACTGCG
CCACATTCTGCGCCGCTGCGGTGGTGGCATCCTGCGACGTTTGCGGCGTT
GCTCCATCCGACAGGCGGTCATCCACTTCGCCAACAATGTAATCGGGTAT
GTCCATCTTGACGGCGCCGCGC
BS17891.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12236-PA | 1662 | CG12236-RA | 957..1655 | 722..24 | 3495 | 100 | Minus |
CG12236-PB | 1533 | CG12236-RB | 957..1324 | 722..355 | 1840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12236-RA | 2335 | CG12236-RA | 1314..2012 | 722..24 | 3495 | 100 | Minus |
CG12236-RB | 3038 | CG12236-RB | 1314..1681 | 722..355 | 1840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5912425..5912756 | 355..24 | 1660 | 100 | Minus |
X | 23542271 | X | 5909632..5909849 | 722..505 | 1090 | 100 | Minus |
X | 23542271 | X | 5909912..5910061 | 504..355 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:45:26 has no hits.
BS17891.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:14 Download gff for
BS17891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12236-PA | 957..1662 | 17..722 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:24 Download gff for
BS17891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12236-RA | 1324..2029 | 17..722 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:26:13 Download gff for
BS17891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12236-RA | 1314..2019 | 17..722 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:26:13 Download gff for
BS17891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5909632..5909849 | 505..722 | 100 | -> | Minus |
X | 5909912..5910061 | 355..504 | 100 | -> | Minus |
X | 5912426..5912763 | 17..354 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:24 Download gff for
BS17891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5803665..5803882 | 505..722 | 100 | -> | Minus |
arm_X | 5803945..5804094 | 355..504 | 100 | -> | Minus |
arm_X | 5806459..5806796 | 17..354 | 99 | | Minus |
BS17891.5prime Sequence
852 bp (799 high quality bases) assembled on 2007-05-30
> BS17891.5prime
GAAGTTATCAGTCGACATGGCCACCACCCAGCAGTACTCGCTGCGGTGGA
ACAACTACCTGCGCCACCTCACCTACTCCCTGGACAACCACCGGCTGAAC
GATGACTTCGTGGACGTCAGCCTGTGCGTGGATGGACGCAGGATCAAGGC
CCACAAGGTGGTACTCTCCTCCTGCTCGTCCTACTTTAAGGAGATATTCA
AGGAGAACCCACATCCGCATCCAGTCATTATATTTAAGTTTATCAAGTTC
GAGGATCTCAATTCGATTATCGAGTTCATGTACCAGGGCGAAGTCAATGT
GCAGCAGGAGGCGCTGCAATCGTTCCTGCAAACTGCCGAGCTGCTGGCCG
TCCAAGGACTCACCGCCGAGGAGAAGGAGAAGCCGCAGATCCCGGTGGCG
CCGCTGATCAGCGAGCACAAGCTGATCAAGACCATACCGAGCACCATACG
CGCGGTCAACGAGCAGCAGCAGCAGGTGTCCAATGTGGCCCAGGCGCAGA
CAGCTACGCAAACCATCGAAATACCCGCGGCCACTTTGCTGCAAGCCACC
AACGCCAGCCAGGTGCCATCGCAGGTGGTCGCAGCAGCCGCAGCAGCCGC
AGCGGCACAACAGCTGCAGGTCCAGCATCAACAGCAGCAGCATCACCATG
TACAAACCACCCAGATTCAGCACATCCAAGTGCAATCGGCACCGCCCCCG
CAACAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACAGCAGCAGCAGCAGCAATCACAGCAGCAACAAACGACGCCCGTGC
AGACGCAACACCTGACCATCACCCATGCGGTGGCCCTGCCGGCGGCCAGT
TC
BS17891.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12236-PA | 1662 | CG12236-RA | 1..836 | 17..852 | 4155 | 99.8 | Plus |
CG12236-PB | 1533 | CG12236-RB | 1..836 | 17..852 | 4155 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12236-RB | 3038 | CG12236-RB | 358..1193 | 17..852 | 4165 | 99.9 | Plus |
CG12236-RA | 2335 | CG12236-RA | 358..1193 | 17..852 | 4165 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5908869..5909436 | 285..852 | 2825 | 99.8 | Plus |
X | 23542271 | X | 5908492..5908762 | 17..287 | 1355 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 06:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 2031..2066 | 422..388 | 114 | 83.3 | Minus |
BS17891.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:18 Download gff for
BS17891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12236-PB | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:10:30 Download gff for
BS17891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12236-RA | 368..1203 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:19 Download gff for
BS17891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12236-RA | 358..1193 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:19 Download gff for
BS17891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5908492..5908761 | 17..286 | 100 | -> | Plus |
X | 5908871..5909436 | 287..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:10:30 Download gff for
BS17891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5802525..5802794 | 17..286 | 100 | -> | Plus |
arm_X | 5802904..5803469 | 287..852 | 99 | | Plus |
BS17891.pep Sequence
Translation from 16 to 1677
> BS17891.pep
MATTQQYSLRWNNYLRHLTYSLDNHRLNDDFVDVSLCVDGRRIKAHKVVL
SSCSSYFKEIFKENPHPHPVIIFKFIKFEDLNSIIEFMYQGEVNVQQEAL
QSFLQTAELLAVQGLTAEEKEKPQIPVAPLISEHKLIKTIPSTIRAVNEQ
QQQVSNVAQAQTATQTIEIPAATLLQATNASQVPSQVVAAAAAAAAAQQL
QVQHQQQQHHHVQTTQIQHIQVQSAPPPQQQQQQQQQQQQQQQQQQQQQQ
QQSQQQQTTPVQTQHLTITNAVALPAASSVKKRKITFSDDDDNMYTTETV
DYAVKDEQTIVKTAEMTFLRGAVKMDIPDYIVGEVDDRLSDGATPQTSQD
ATTAAAQNVAQYSSEYEILTESEMEEKYQADADNAEIAIEMTRLLGTASG
TPGAGSGQVMEDSGGGSATTGPSTTVSVTQVKSDSKASGTNAALKPGSVT
VARSSKSGATASAPPAGSDEESVQYTGLAPLNCSFCGRPLKSVNALRRHI
ASRHSEIQGKEHECFICMKSFKTKWSLSTHNSRFHREMGCSTKGFTKIEY
SDH*
BS17891.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12236-PA | 553 | CG12236-PA | 1..553 | 1..553 | 2810 | 100 | Plus |
CG12236-PB | 510 | CG12236-PB | 1..502 | 1..537 | 2255 | 86.2 | Plus |
BtbVII-PE | 743 | CG43365-PE | 2..258 | 3..284 | 402 | 35.7 | Plus |
BtbVII-PD | 743 | CG43365-PD | 2..258 | 3..284 | 402 | 35.7 | Plus |
BtbVII-PB | 743 | CG11494-PB | 2..258 | 3..284 | 402 | 35.7 | Plus |