Clone Sequence Records
BS17892.5prime Sequence
796 bp (700 high quality bases) assembled on 2007-05-30
> BS17892.5prime
GAAGTTATCACTCGACATGCCGCGCTGCCTGATAGCCAAGAAGTGGAAGG
CCTATCCCTGGCTGGATCGGACGGAGGATACTAGCAACCAGCAACAGCAG
CAGGAGCAGAGTGCCCCCAACTCGCCTCGCGAACTGGAGGAGCTGCATCT
CAAGTCCAGACGCTCCACCCTGGACGACGACGAGGAGATCGATGTGGTGG
GCGACAAATTCCTGATCAAATTGGAGAAGCAACGCACAACAGCAGATGCT
GCCGCAGCAGCAGCAACATCATCCGAAGCAGCAACATCGCACAGCAGCAA
CAGCAGCAACATGGAGGCATCGGCGACGACGACGACGTCCAAGTGCTGGG
GACCCAGTTCACCCACGGCGGGCACCACGGCTCCAAGTCCGCCTCCCCAT
TCGCCGGAGGCGGCGACGCGAGTGGCCGGCAATGTTTACAACGGCTACAC
CCGCGAACTTTCGCCGCTGCACTACACCGCGTACCTGCCCCGCATGGAGA
GCGAGATAACCGTGATCCGTGCCGCGGCTACAGCTCTGGTGGCAGCCAGG
ACATCCGGAAACGGAAGTGGAGATCAGCACCTGGCCGCCTACCAAACGCC
GCCCTCGTCCACCACGTCATCACCCTCTTGTTCGCCCAGCGGCGCCGGCG
ATCGGTACAGTCCGCTCTCGAGTGGACAGACCTCCAGTGAAAGGAAGTGC
TTCAGCAGTACGGGAGCCACACTGTCGCTGCCGCCGAAGAAGAAGGACAT
CTACAGGCCGTATTCCTTGGACGACAAGCCGGCGCACGGCTATCGA
BS17892.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1130-PA | 1962 | scrt-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scrt-RB | 9075 | CG1130-RB | 1169..1948 | 17..796 | 3900 | 100 | Plus |
scrt-RA | 3641 | CG1130-RA | 1169..1948 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3985064..3985491 | 17..444 | 2140 | 100 | Plus |
3L | 28110227 | 3L | 3986523..3986876 | 443..796 | 1770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:36:38 has no hits.
BS17892.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:28 Download gff for
BS17892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1130-PA | 1..779 | 17..795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:31 Download gff for
BS17892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scrt-RA | 1161..1947 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:17 Download gff for
BS17892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scrt-RA | 1161..1947 | 9..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:17 Download gff for
BS17892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3985056..3985490 | 9..443 | 99 | -> | Plus |
3L | 3986524..3986875 | 444..795 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:31 Download gff for
BS17892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3985056..3985490 | 9..443 | 99 | -> | Plus |
arm_3L | 3986524..3986875 | 444..795 | 100 | | Plus |
BS17892.3prime Sequence
862 bp (861 high quality bases) assembled on 2007-05-30
> BS17892.3prime
ATGGTCTAGAAAGCTTTTACATGGCATAAGTGGCTCCTCCACTGCCCTCG
AGTTTGACGCGCTCAAGGAACTCGTGTGGCGGCGACGAGGCCATACTGGC
CCCACTCTCGCTATTGCTGTCGTGCATCGACAGCGACATGGACATCATCA
GCTCCTCCTCGTCCTTCAGGCAAGCCGATTCCAAATGCTTGTTGAGGTAT
GACTTCAGGGCGAAGGTCTTGTGGCACCGCTTGCACTCGAAGTTCTTGTC
CACCGAATGGGTCTGCATGTGTGCTCGTAGATTGGAACGATCGGCGAAGG
CCTTGCCGCAGTGCGCACATCCATAGGGCTTCTCGCCCGTGTGCGATCTC
AGGTGACCCTGGAGCAGCCAGGGCCTCGAGAACAGCTTGCCACAGACGCC
GCAACTGTGGGATAGCTTGTGCGTGAGCAAGTGCATCGCCAGGGCGGGCA
TGGAAACGTAGGCCTTGCCACAGGTGTGGCACTTCTTGGCGGACTGCGAG
TCCAGCGAGCGATGGGTTTGTTTGTGGCGCGACAGGTTCGAGGAGGTGGC
ATACTGCTTGCCACACTCGGAGCACGTGTACTTGGTCTTCTGCTGGTCAG
GAGTGGGCACTCCGCTGGCGGCAGCTGCAGGATCCGCCACATGTTTGCGC
TTCGAACGGCCATCGCTGACGAAGAAGGCCTCGTAGGTGTAGGCCACCGT
TTTGGCCGACGCTCCGGAGGCGCCACTGTGCTCGCCATCCTGAAGACATC
CATCCCCATCCGGGTTCGTGTTGGTGGTGTTGCTGTTCTCGTTCTGCACC
TGGCTGCTGCTGCTGCTCGAGTTGCTGCTGGGACTGCTGGGCATGTGATT
GCTGCTGGCACT
BS17892.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1130-PA | 1962 | scrt-RA | 1117..1962 | 862..17 | 4230 | 100 | Minus |
CG12605-PB | 1860 | CG12605-RB | 1320..1544 | 575..351 | 550 | 89.7 | Minus |
CG12605-PA | 1860 | CG12605-RA | 1320..1544 | 575..351 | 550 | 89.7 | Minus |
CG12605-PC | 1425 | CG12605-RC | 885..1109 | 575..351 | 550 | 89.7 | Minus |
CG12605-PB | 1860 | CG12605-RB | 1585..1727 | 310..168 | 190 | 85.3 | Minus |
CG12605-PA | 1860 | CG12605-RA | 1585..1727 | 310..168 | 190 | 85.3 | Minus |
CG12605-PC | 1425 | CG12605-RC | 1189..1292 | 271..168 | 170 | 86.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scrt-RB | 9075 | CG1130-RB | 2285..3130 | 862..17 | 4230 | 100 | Minus |
scrt-RA | 3641 | CG1130-RA | 2285..3130 | 862..17 | 4230 | 100 | Minus |
CG12605-RE | 2770 | CG12605-RE | 2089..2501 | 580..168 | 1225 | 86.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3987213..3988058 | 862..17 | 4230 | 100 | Minus |
3L | 28110227 | 3L | 3958660..3959072 | 168..580 | 1225 | 86.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:15:06 has no hits.
BS17892.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:23 Download gff for
BS17892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1130-PA | 1117..1962 | 17..862 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:25 Download gff for
BS17892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scrt-RA | 2285..3132 | 13..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:15 Download gff for
BS17892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scrt-RA | 2285..3132 | 13..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:15 Download gff for
BS17892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3987213..3988060 | 13..862 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:25 Download gff for
BS17892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3987213..3988060 | 13..862 | 99 | | Minus |
BS17892.complete Sequence
1994 bp assembled on 2009-12-07
GenBank Submission: KX800256
> BS17892.complete
GAAGTTATCAGTCGACATGCCGCGCTGCCTGATAGCCAAGAAGTGGAAGG
CCTATCCCTGGCTGGATCGGACGGAGGATACTAGCAACCAGCAACAGCAG
CAGGAGCAGAGTGCCCCCAACTCGCCTCGCGAACTGGAGGAGCTGCATCT
CAAGTCCAGACGCTCCACCCTGGACGACGACGAGGAGATCGATGTGGTGG
GCGACAAATTCCTGATCAAATTGGAGAAGCAACGCACAACAGCAGATGCT
GCCGCAGCAGCAGCAACATCATCCGAAGCAGCAACATCGCACAGCAGCAA
CAGCAGCAACATGGAGGCATCGGCGACGACGACGACGTCCAAGTGCTGGG
GACCCAGTTCACCCACGGCGGGCACCACGGCTCCAAGTCCGCCTCCCCAT
TCGCCGGAGGCGGCGACGCGAGTGGCCGGCAATGTTTACAACGGCTACAC
CCGCGAACTTTCGCCGCTGCACTACACCGCGTACCTGCCCCGCATGGAGA
GCGAGATAACCGTGATCCGTGCCGCGGCTACAGCTCTGGTGGCAGCCAGG
ACATCCGGAAACGGAAGTGGAGATCAGCACCTGGCCGCCTACCAAACGCC
GCCCTCGTCCACCACGTCATCACCCTCTTGTTCGCCCAGCGGCGCCGGCG
ATCGGTACAGTCCGCTCTCGAGTGGACAGACCTCCAGTGAAAGGAAGTGC
TTCAGCAGTACGGGAGCCACACTGTCGCTGCCGCCGAAGAAGAAGGACAT
CTACAGGCCGTATTCCTTGGACGACAAGCCGGCGCACGGCTATCGAAGAA
GGGTACCGGCGGAGGAGGACCTGCATGCGGCACATGCTATCCTGGATCTG
AGTGCGAGCACAGCCTTCCACCCGCCCACGCAACCTCACCAGTTGCAGCA
GCAGCAACAGCAGCAGCAGCAGCAGCATCAGCATCACCACTCCCAGCAGC
AACACCTTGCCCCGCAGCAACATCACTACTTGCCACTGCAGCAGCAACAG
CAGCAGCAGGCACACCACACCCACTTGCCAACTCTCGAGGCGCATGCGCA
TCTGCGCAGCACGTCATCGATTGCCGAACTGGCTGCAGCGGCCAGTGTGG
TAAATGAGCAACGCCCCGCCAGCAATGCCTCGAGTGCCAGCAGCAATCAC
ATGCCCAGCAGTCCCAGCAGCAACTCGAGCAGCAGCAGCAGCCAGGTGCA
GAACGAGAACAGCAACACCACCAACACGAACCCGGATGGGGATGGATGTC
TTCAGGATGGCGAGCACAGTGGCGCCTCCGGAGCGTCGGCCAAAACGGTG
GCCTACACCTACGAGGCCTTCTTCGTCAGCGATGGCCGTTCGAAGCGCAA
ACATGTGGCGGATCCTGCAGCTGCCGCCAGCGGAGTGCCCACTCCTGACC
AGCAGAAGACCAAGTACACGTGCTCCGAGTGTGGCAAGCAGTATGCCACC
TCCTCGAACCTGTCGCGCCACAAACAAACCCATCGCTCGCTGGACTCGCA
GTCCGCCAAGAAGTGCCACACCTGTGGCAAGGCCTACGTTTCCATGCCCG
CCCTGGCGATGCACTTGCTCACGCACAAGCTATCCCACAGTTGCGGCGTC
TGTGGCAAGCTGTTCTCGAGGCCCTGGCTGCTCCAGGGTCACCTGAGATC
GCACACGGGCGAGAAGCCCTATGGATGTGCGCACTGCGGCAAGGCCTTCG
CCGATCGTTCCAATCTACGAGCACACATGCAGACCCATTCGGTGGACAAG
AACTTCGAGTGCAAGCGGTGCCACAAGACCTTCGCCCTGAAGTCATACCT
CAACAAGCATTTGGAATCGGCTTGCCTGAAGGACGAGGAGGAGCTGATGA
TGTCCATGTCGCTGTCGATGCACGACAGCAATAGCGAGAGTGGGGCCAGT
ATGGCCTCGTCGCCGCCACACGAGTTCCTTGAGCGCGTCAAACTCGAGGG
CAGTGGAGGAGCCACTTATGCCATGTAAAAGCTTTCTAGACCAT
BS17892.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scrt-RB | 1962 | CG1130-PB | 1..1962 | 17..1978 | 9810 | 100 | Plus |
scrt-RA | 1962 | CG1130-PA | 1..1962 | 17..1978 | 9810 | 100 | Plus |
CG12605-RE | 1860 | CG12605-PE | 1315..1727 | 1415..1827 | 1225 | 86.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scrt-RB | 9075 | CG1130-RB | 1169..3130 | 17..1978 | 9810 | 100 | Plus |
scrt-RA | 3641 | CG1130-RA | 1169..3130 | 17..1978 | 9810 | 100 | Plus |
CG12605-RE | 2770 | CG12605-RE | 2089..2501 | 1415..1827 | 1225 | 86.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3986523..3988058 | 443..1978 | 7680 | 100 | Plus |
3L | 28110227 | 3L | 3985064..3985491 | 17..444 | 2140 | 100 | Plus |
3L | 28110227 | 3L | 3958660..3959072 | 1827..1415 | 1225 | 86.4 | Minus |
Blast to na_te.dros performed 2014-11-28 02:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2898 | 909..1231 | 201 | 56.1 | Plus |
BS17892.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:43 Download gff for
BS17892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scrt-RA | 1149..3108 | 17..1976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:08 Download gff for
BS17892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scrt-RA | 1169..3128 | 17..1976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:12 Download gff for
BS17892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scrt-RA | 1149..3108 | 17..1976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:24 Download gff for
BS17892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scrt-RA | 1169..3128 | 17..1976 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:24 Download gff for
BS17892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3985064..3985490 | 17..443 | 100 | -> | Plus |
3L | 3986524..3988056 | 444..1976 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:08 Download gff for
BS17892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3985064..3985490 | 17..443 | 100 | -> | Plus |
arm_3L | 3986524..3988056 | 444..1976 | 100 | | Plus |
BS17892.pep Sequence
Translation from 16 to 1977
> BS17892.pep
MPRCLIAKKWKAYPWLDRTEDTSNQQQQQEQSAPNSPRELEELHLKSRRS
TLDDDEEIDVVGDKFLIKLEKQRTTADAAAAAATSSEAATSHSSNSSNME
ASATTTTSKCWGPSSPTAGTTAPSPPPHSPEAATRVAGNVYNGYTRELSP
LHYTAYLPRMESEITVIRAAATALVAARTSGNGSGDQHLAAYQTPPSSTT
SSPSCSPSGAGDRYSPLSSGQTSSERKCFSSTGATLSLPPKKKDIYRPYS
LDDKPAHGYRRRVPAEEDLHAAHAILDLSASTAFHPPTQPHQLQQQQQQQ
QQQHQHHHSQQQHLAPQQHHYLPLQQQQQQQAHHTHLPTLEAHAHLRSTS
SIAELAAAASVVNEQRPASNASSASSNHMPSSPSSNSSSSSSQVQNENSN
TTNTNPDGDGCLQDGEHSGASGASAKTVAYTYEAFFVSDGRSKRKHVADP
AAAASGVPTPDQQKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKC
HTCGKAYVSMPALAMHLLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEK
PYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKHLE
SACLKDEEELMMSMSLSMHDSNSESGASMASSPPHEFLERVKLEGSGGAT
YAM*
BS17892.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:36:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scrt-PB | 653 | CG1130-PB | 1..653 | 1..653 | 3441 | 100 | Plus |
scrt-PA | 653 | CG1130-PA | 1..653 | 1..653 | 3441 | 100 | Plus |
CG12605-PE | 619 | CG12605-PE | 152..594 | 162..622 | 738 | 39.5 | Plus |
CG12605-PD | 619 | CG12605-PD | 152..594 | 162..622 | 738 | 39.5 | Plus |
CG12605-PC | 474 | CG12605-PC | 124..449 | 324..622 | 733 | 50.5 | Plus |