Clone BS17892 Report

Search the DGRC for BS17892

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:178
Well:92
Vector:pDNR-Dual
Associated Gene/Transcriptscrt-RA
Protein status:BS17892.pep: full length peptide match
Sequenced Size:1994

Clone Sequence Records

BS17892.5prime Sequence

796 bp (700 high quality bases) assembled on 2007-05-30

> BS17892.5prime
GAAGTTATCACTCGACATGCCGCGCTGCCTGATAGCCAAGAAGTGGAAGG
CCTATCCCTGGCTGGATCGGACGGAGGATACTAGCAACCAGCAACAGCAG
CAGGAGCAGAGTGCCCCCAACTCGCCTCGCGAACTGGAGGAGCTGCATCT
CAAGTCCAGACGCTCCACCCTGGACGACGACGAGGAGATCGATGTGGTGG
GCGACAAATTCCTGATCAAATTGGAGAAGCAACGCACAACAGCAGATGCT
GCCGCAGCAGCAGCAACATCATCCGAAGCAGCAACATCGCACAGCAGCAA
CAGCAGCAACATGGAGGCATCGGCGACGACGACGACGTCCAAGTGCTGGG
GACCCAGTTCACCCACGGCGGGCACCACGGCTCCAAGTCCGCCTCCCCAT
TCGCCGGAGGCGGCGACGCGAGTGGCCGGCAATGTTTACAACGGCTACAC
CCGCGAACTTTCGCCGCTGCACTACACCGCGTACCTGCCCCGCATGGAGA
GCGAGATAACCGTGATCCGTGCCGCGGCTACAGCTCTGGTGGCAGCCAGG
ACATCCGGAAACGGAAGTGGAGATCAGCACCTGGCCGCCTACCAAACGCC
GCCCTCGTCCACCACGTCATCACCCTCTTGTTCGCCCAGCGGCGCCGGCG
ATCGGTACAGTCCGCTCTCGAGTGGACAGACCTCCAGTGAAAGGAAGTGC
TTCAGCAGTACGGGAGCCACACTGTCGCTGCCGCCGAAGAAGAAGGACAT
CTACAGGCCGTATTCCTTGGACGACAAGCCGGCGCACGGCTATCGA

BS17892.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1130-PA 1962 scrt-RA 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
scrt-RB 9075 CG1130-RB 1169..1948 17..796 3900 100 Plus
scrt-RA 3641 CG1130-RA 1169..1948 17..796 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3985064..3985491 17..444 2140 100 Plus
3L 28110227 3L 3986523..3986876 443..796 1770 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:36:38 has no hits.

BS17892.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:28 Download gff for BS17892.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1130-PA 1..779 17..795 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:31 Download gff for BS17892.5prime
Subject Subject Range Query Range Percent Splice Strand
scrt-RA 1161..1947 9..795 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:17 Download gff for BS17892.5prime
Subject Subject Range Query Range Percent Splice Strand
scrt-RA 1161..1947 9..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:17 Download gff for BS17892.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3985056..3985490 9..443 99 -> Plus
3L 3986524..3986875 444..795 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:31 Download gff for BS17892.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3985056..3985490 9..443 99 -> Plus
arm_3L 3986524..3986875 444..795 100   Plus

BS17892.3prime Sequence

862 bp (861 high quality bases) assembled on 2007-05-30

> BS17892.3prime
ATGGTCTAGAAAGCTTTTACATGGCATAAGTGGCTCCTCCACTGCCCTCG
AGTTTGACGCGCTCAAGGAACTCGTGTGGCGGCGACGAGGCCATACTGGC
CCCACTCTCGCTATTGCTGTCGTGCATCGACAGCGACATGGACATCATCA
GCTCCTCCTCGTCCTTCAGGCAAGCCGATTCCAAATGCTTGTTGAGGTAT
GACTTCAGGGCGAAGGTCTTGTGGCACCGCTTGCACTCGAAGTTCTTGTC
CACCGAATGGGTCTGCATGTGTGCTCGTAGATTGGAACGATCGGCGAAGG
CCTTGCCGCAGTGCGCACATCCATAGGGCTTCTCGCCCGTGTGCGATCTC
AGGTGACCCTGGAGCAGCCAGGGCCTCGAGAACAGCTTGCCACAGACGCC
GCAACTGTGGGATAGCTTGTGCGTGAGCAAGTGCATCGCCAGGGCGGGCA
TGGAAACGTAGGCCTTGCCACAGGTGTGGCACTTCTTGGCGGACTGCGAG
TCCAGCGAGCGATGGGTTTGTTTGTGGCGCGACAGGTTCGAGGAGGTGGC
ATACTGCTTGCCACACTCGGAGCACGTGTACTTGGTCTTCTGCTGGTCAG
GAGTGGGCACTCCGCTGGCGGCAGCTGCAGGATCCGCCACATGTTTGCGC
TTCGAACGGCCATCGCTGACGAAGAAGGCCTCGTAGGTGTAGGCCACCGT
TTTGGCCGACGCTCCGGAGGCGCCACTGTGCTCGCCATCCTGAAGACATC
CATCCCCATCCGGGTTCGTGTTGGTGGTGTTGCTGTTCTCGTTCTGCACC
TGGCTGCTGCTGCTGCTCGAGTTGCTGCTGGGACTGCTGGGCATGTGATT
GCTGCTGGCACT

BS17892.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1130-PA 1962 scrt-RA 1117..1962 862..17 4230 100 Minus
CG12605-PB 1860 CG12605-RB 1320..1544 575..351 550 89.7 Minus
CG12605-PA 1860 CG12605-RA 1320..1544 575..351 550 89.7 Minus
CG12605-PC 1425 CG12605-RC 885..1109 575..351 550 89.7 Minus
CG12605-PB 1860 CG12605-RB 1585..1727 310..168 190 85.3 Minus
CG12605-PA 1860 CG12605-RA 1585..1727 310..168 190 85.3 Minus
CG12605-PC 1425 CG12605-RC 1189..1292 271..168 170 86.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
scrt-RB 9075 CG1130-RB 2285..3130 862..17 4230 100 Minus
scrt-RA 3641 CG1130-RA 2285..3130 862..17 4230 100 Minus
CG12605-RE 2770 CG12605-RE 2089..2501 580..168 1225 86.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3987213..3988058 862..17 4230 100 Minus
3L 28110227 3L 3958660..3959072 168..580 1225 86.4 Plus
Blast to na_te.dros performed on 2015-02-13 07:15:06 has no hits.

BS17892.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:23 Download gff for BS17892.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1130-PA 1117..1962 17..862 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:25 Download gff for BS17892.3prime
Subject Subject Range Query Range Percent Splice Strand
scrt-RA 2285..3132 13..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:15 Download gff for BS17892.3prime
Subject Subject Range Query Range Percent Splice Strand
scrt-RA 2285..3132 13..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:15 Download gff for BS17892.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3987213..3988060 13..862 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:25 Download gff for BS17892.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3987213..3988060 13..862 99   Minus

BS17892.complete Sequence

1994 bp assembled on 2009-12-07

GenBank Submission: KX800256

> BS17892.complete
GAAGTTATCAGTCGACATGCCGCGCTGCCTGATAGCCAAGAAGTGGAAGG
CCTATCCCTGGCTGGATCGGACGGAGGATACTAGCAACCAGCAACAGCAG
CAGGAGCAGAGTGCCCCCAACTCGCCTCGCGAACTGGAGGAGCTGCATCT
CAAGTCCAGACGCTCCACCCTGGACGACGACGAGGAGATCGATGTGGTGG
GCGACAAATTCCTGATCAAATTGGAGAAGCAACGCACAACAGCAGATGCT
GCCGCAGCAGCAGCAACATCATCCGAAGCAGCAACATCGCACAGCAGCAA
CAGCAGCAACATGGAGGCATCGGCGACGACGACGACGTCCAAGTGCTGGG
GACCCAGTTCACCCACGGCGGGCACCACGGCTCCAAGTCCGCCTCCCCAT
TCGCCGGAGGCGGCGACGCGAGTGGCCGGCAATGTTTACAACGGCTACAC
CCGCGAACTTTCGCCGCTGCACTACACCGCGTACCTGCCCCGCATGGAGA
GCGAGATAACCGTGATCCGTGCCGCGGCTACAGCTCTGGTGGCAGCCAGG
ACATCCGGAAACGGAAGTGGAGATCAGCACCTGGCCGCCTACCAAACGCC
GCCCTCGTCCACCACGTCATCACCCTCTTGTTCGCCCAGCGGCGCCGGCG
ATCGGTACAGTCCGCTCTCGAGTGGACAGACCTCCAGTGAAAGGAAGTGC
TTCAGCAGTACGGGAGCCACACTGTCGCTGCCGCCGAAGAAGAAGGACAT
CTACAGGCCGTATTCCTTGGACGACAAGCCGGCGCACGGCTATCGAAGAA
GGGTACCGGCGGAGGAGGACCTGCATGCGGCACATGCTATCCTGGATCTG
AGTGCGAGCACAGCCTTCCACCCGCCCACGCAACCTCACCAGTTGCAGCA
GCAGCAACAGCAGCAGCAGCAGCAGCATCAGCATCACCACTCCCAGCAGC
AACACCTTGCCCCGCAGCAACATCACTACTTGCCACTGCAGCAGCAACAG
CAGCAGCAGGCACACCACACCCACTTGCCAACTCTCGAGGCGCATGCGCA
TCTGCGCAGCACGTCATCGATTGCCGAACTGGCTGCAGCGGCCAGTGTGG
TAAATGAGCAACGCCCCGCCAGCAATGCCTCGAGTGCCAGCAGCAATCAC
ATGCCCAGCAGTCCCAGCAGCAACTCGAGCAGCAGCAGCAGCCAGGTGCA
GAACGAGAACAGCAACACCACCAACACGAACCCGGATGGGGATGGATGTC
TTCAGGATGGCGAGCACAGTGGCGCCTCCGGAGCGTCGGCCAAAACGGTG
GCCTACACCTACGAGGCCTTCTTCGTCAGCGATGGCCGTTCGAAGCGCAA
ACATGTGGCGGATCCTGCAGCTGCCGCCAGCGGAGTGCCCACTCCTGACC
AGCAGAAGACCAAGTACACGTGCTCCGAGTGTGGCAAGCAGTATGCCACC
TCCTCGAACCTGTCGCGCCACAAACAAACCCATCGCTCGCTGGACTCGCA
GTCCGCCAAGAAGTGCCACACCTGTGGCAAGGCCTACGTTTCCATGCCCG
CCCTGGCGATGCACTTGCTCACGCACAAGCTATCCCACAGTTGCGGCGTC
TGTGGCAAGCTGTTCTCGAGGCCCTGGCTGCTCCAGGGTCACCTGAGATC
GCACACGGGCGAGAAGCCCTATGGATGTGCGCACTGCGGCAAGGCCTTCG
CCGATCGTTCCAATCTACGAGCACACATGCAGACCCATTCGGTGGACAAG
AACTTCGAGTGCAAGCGGTGCCACAAGACCTTCGCCCTGAAGTCATACCT
CAACAAGCATTTGGAATCGGCTTGCCTGAAGGACGAGGAGGAGCTGATGA
TGTCCATGTCGCTGTCGATGCACGACAGCAATAGCGAGAGTGGGGCCAGT
ATGGCCTCGTCGCCGCCACACGAGTTCCTTGAGCGCGTCAAACTCGAGGG
CAGTGGAGGAGCCACTTATGCCATGTAAAAGCTTTCTAGACCAT

BS17892.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
scrt-RB 1962 CG1130-PB 1..1962 17..1978 9810 100 Plus
scrt-RA 1962 CG1130-PA 1..1962 17..1978 9810 100 Plus
CG12605-RE 1860 CG12605-PE 1315..1727 1415..1827 1225 86.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
scrt-RB 9075 CG1130-RB 1169..3130 17..1978 9810 100 Plus
scrt-RA 3641 CG1130-RA 1169..3130 17..1978 9810 100 Plus
CG12605-RE 2770 CG12605-RE 2089..2501 1415..1827 1225 86.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3986523..3988058 443..1978 7680 100 Plus
3L 28110227 3L 3985064..3985491 17..444 2140 100 Plus
3L 28110227 3L 3958660..3959072 1827..1415 1225 86.4 Minus
Blast to na_te.dros performed 2014-11-28 02:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2596..2898 909..1231 201 56.1 Plus

BS17892.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:43 Download gff for BS17892.complete
Subject Subject Range Query Range Percent Splice Strand
scrt-RA 1149..3108 17..1976 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:08 Download gff for BS17892.complete
Subject Subject Range Query Range Percent Splice Strand
scrt-RA 1169..3128 17..1976 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:12 Download gff for BS17892.complete
Subject Subject Range Query Range Percent Splice Strand
scrt-RA 1149..3108 17..1976 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:24 Download gff for BS17892.complete
Subject Subject Range Query Range Percent Splice Strand
scrt-RA 1169..3128 17..1976 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:24 Download gff for BS17892.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3985064..3985490 17..443 100 -> Plus
3L 3986524..3988056 444..1976 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:08 Download gff for BS17892.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3985064..3985490 17..443 100 -> Plus
arm_3L 3986524..3988056 444..1976 100   Plus

BS17892.pep Sequence

Translation from 16 to 1977

> BS17892.pep
MPRCLIAKKWKAYPWLDRTEDTSNQQQQQEQSAPNSPRELEELHLKSRRS
TLDDDEEIDVVGDKFLIKLEKQRTTADAAAAAATSSEAATSHSSNSSNME
ASATTTTSKCWGPSSPTAGTTAPSPPPHSPEAATRVAGNVYNGYTRELSP
LHYTAYLPRMESEITVIRAAATALVAARTSGNGSGDQHLAAYQTPPSSTT
SSPSCSPSGAGDRYSPLSSGQTSSERKCFSSTGATLSLPPKKKDIYRPYS
LDDKPAHGYRRRVPAEEDLHAAHAILDLSASTAFHPPTQPHQLQQQQQQQ
QQQHQHHHSQQQHLAPQQHHYLPLQQQQQQQAHHTHLPTLEAHAHLRSTS
SIAELAAAASVVNEQRPASNASSASSNHMPSSPSSNSSSSSSQVQNENSN
TTNTNPDGDGCLQDGEHSGASGASAKTVAYTYEAFFVSDGRSKRKHVADP
AAAASGVPTPDQQKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKC
HTCGKAYVSMPALAMHLLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEK
PYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKHLE
SACLKDEEELMMSMSLSMHDSNSESGASMASSPPHEFLERVKLEGSGGAT
YAM*

BS17892.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
scrt-PB 653 CG1130-PB 1..653 1..653 3441 100 Plus
scrt-PA 653 CG1130-PA 1..653 1..653 3441 100 Plus
CG12605-PE 619 CG12605-PE 152..594 162..622 738 39.5 Plus
CG12605-PD 619 CG12605-PD 152..594 162..622 738 39.5 Plus
CG12605-PC 474 CG12605-PC 124..449 324..622 733 50.5 Plus