Clone Sequence Records
BS17896.complete Sequence
2387 bp assembled on 2009-12-07
GenBank Submission: KX800944
> BS17896.complete
GAAGTTATCAGTCGACATGGAACCCTCATATGATCACGAACATCCACATC
ATCTGCTAACAAATTACAATTCGAAAAAGTATCCGCACGTCTCGCGCACT
CCGGAGTACAGTCACTCCACCGGCAGCGATTATCCGGAGCACGGTGGCTA
TCTGACGGATGGACGCCTGATGCACGAGAGCAACAGCGATGCCGGGATCT
ACCACGTGCGCCAGGGAAGCGAGCACTCCTCGCCCAGTCTGCACTCGCCA
GCCATACAGAGCTCCGGATACGAGAATGAGCACCTGAACGAGGCGGTTCT
GGCCGCGCACAGCCACAGTCACTCGCCCATGCCGATGGTGTCCAGTGCCT
ATGTGGGCGGAGGAACTGCCTCCGGATCGCTGATTAACAGCAATATTCCT
CTGCTCGGTGGCGGCGGTAATTCCGTACTGAACAAATTTCTATCGCATCC
GCACGCTGGCATGGTGGGCGGTGGAACCGGACAGATGGAGGACTGCACAT
CGCACTCGCCAATTGAAGCGGCGTCCATGTGGAGCTACGACTACAAGGGC
GACCTGTGCGCGCCCAATTGTGGCTATCTGGAGCGACACAAGCCGCTGCC
CGCCGACCTTAAGTATCGGCCCGGCGGAACCCAGTCAAAAAGTGCCAAAG
AATCGCGCATCCGGCGGCCGATGAACGCCTTCATGGTCTGGGCCAAGATC
GAGCGCAAGAAGCTGGCCGACGAGAATCCCGATCTGCATAATGCCGACCT
CAGCAAGATGTTGGGAAAAAAATGGCGATCGCTGACGCCGCAAGATCGCA
GACCCTACGTGGAGGAGGCGGAGCGTCTGCGGGTGATTCACATGACGGAG
CATCCGAACTACAAGTACCGACCCCGACGACGCAAGCAGTCCAAGCTGCG
GGCCATGCAGCCGGGCGGCAAGGAGCAGAGCGAGAGTTCACCCAATCCGG
GCACTGGTGGATCCAAGTCGAATCCCAAGCTGGCCACACCACCGTTGGCC
ACCGCATCATCCAGCTATACAACGCCCACCGACGAAAGCACCTGCAATTC
CACGAACCAGAATCACGGACAATCAACTCCGGGTGGCCTGTACGAGCAAC
CGCTGAAGCCCACGTACTCGCCCAGTTCCGTGGACTGCTACAGCAATGCG
GACAGCACGGAACAGATCGAGTCACTGGCCGCCAACTGTCCGCCCGCCCT
GCTCAATGAATCGTCGCCCACGGGCGGTGGCTACGACAACTCGCTGTTGC
TCAAGAAGTTAACCAAGCCGTCGCCGAGTCGTGCGGCCAAGTCGCGCCAG
GAGAAGCTGGCCAAGTCCGAGGAGAAGAACAAGGGGTCACAATCGCAGGG
ACAGTCTCAGCAAGGTATATATGCTGCCACCTATCCGCTAGCACCCACCT
CCGTGGCCGTGGTGGCCGCCAGGGGTATGTACGTGACGTGCAACAATCGG
GGATTGCTGGATCATGGTCACTCCGTCAAGGGCACATTCTATCCACCAGT
ATCCGTTTCGGAAGATGACAATAGCACCTCAATGCGGAACAGCATTAGTG
CTCTGCAGCAGCACTGTAATGTGGTCACAAGTACACCCTCAAGCTCCGGC
GGCACCATGCCAACCAGCGAGATGAGCAGCTACACGGTCTCCATGGCGGA
TAACTGCGGAAATCTCAGGCTCAGCATGAACGAGTTGTCCGGCAATGAGT
ATCTGCCCAGCGCCAATGCCTATGGGATGCAATACGAGGACTTCCTGCGC
TATCAGAGCAACGATATGGACTACTCAACGTCGGCGGTGGAGCACAAGGA
GACCACATCGGATTCGGCGAGCGGCCAGAAGTGCCTTAAGTATCCGGACA
CGAATCAGAACTACGACGACTACGAGGCGGAGGCCTACAGTAACGCCATG
CTGCCTGCAACGGCAGCTAGCTACTACACCCAACTTCCGTATCCGCCCAC
CTCGCTGGCCGCCTTTCCTCTCCAGCTGGCCGTGCCGTTCCAGCAGACGA
CATCGGGCGCCTACGGAGCGCAGCCCATTCAGAGTGGTTACCTGCACTAC
GGCAACTATGGCGGATACGAGGGAATGGCCCAGAGTCAGCCACAGAACCA
AGCGCCCGTCCACCATCAGCAGGCATCCCACTCGGCTCCGCCCTCCCTGT
CAGTGCCACCCAACCAGACGGTGACCTCCAATTCGGCAGCAATTAGCATG
CAGCAGCACCATCATCATCACTTTGGACCCGCACCCGGCATGGTGGGCGT
GGGCGTGGGAGTGGGCGTCGGAGTCGGAGTCGGTGAGATGCTCTTCGAGC
AGCAGCAGCGCAAAGATGATGAGATTAGCAACATTCTGGCAGGAGTGCGC
AAGACCTGCTACAGCAATTGAAAGCTTTCTAGACCAT
BS17896.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox15-RA | 2355 | CG8404-PA | 1..2355 | 17..2371 | 11775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox15-RA | 3651 | CG8404-RA | 1074..3428 | 17..2371 | 11775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14201613..14203220 | 2371..764 | 8040 | 100 | Minus |
| 2R | 25286936 | 2R | 14203357..14204052 | 765..70 | 3480 | 100 | Minus |
| 2R | 25286936 | 2R | 14211288..14211340 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:01:20 has no hits.
BS17896.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:34 Download gff for
BS17896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1070..3423 | 17..2370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:49 Download gff for
BS17896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1074..3427 | 17..2370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:59 Download gff for
BS17896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1070..3423 | 17..2370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:09 Download gff for
BS17896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1074..3427 | 17..2370 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:09 Download gff for
BS17896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14201614..14203219 | 765..2370 | 100 | <- | Minus |
| 2R | 14203358..14204052 | 70..764 | 100 | <- | Minus |
| 2R | 14211288..14211340 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:49 Download gff for
BS17896.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10089119..10090724 | 765..2370 | 100 | <- | Minus |
| arm_2R | 10090863..10091557 | 70..764 | 100 | <- | Minus |
| arm_2R | 10098793..10098845 | 17..69 | 100 | | Minus |
BS17896.5prime Sequence
821 bp (797 high quality bases) assembled on 2007-05-30
> BS17896.5prime
GAAGTTATCAGTCGACATGGAACCCTCATATGATCACGAACATCCACATC
ATCTGCTAACAAATTACAATTCGAAAAAGTATCCGCACGTCTCGCGCACT
CCGGAGTACAGTCACTCCACCGGCAGCGATTATCCGGAGCACGGTGGCTA
TCTGACGGATGGACGCCTGATGCACGAGAGCAACAGCGATGCCGGGATCT
ACCACGTGCGCCAGGGAAGCGAGCACTCCTCGCCCAGTCTGCACTCGCCA
GCCATACAGAGCTCCGGATACGAGAATGAGCACCTGAACGAGGCGGTTCT
GGCCGCGCACAGCCACAGTCACTCGCCCATGCCGATGGTGTCCAGTGCCT
ATGTGGGCGGAGGAACTGCCTCCGGATCGCTGATTAACAGCAATATTCCT
CTGCTCGGTGGCGGCGGTAATTCCGTACTGAACAAATTTCTATCGCATCC
GCACGCTGGCATGGTGGGCGGTGGAACCGGACAGATGGAGGACTGCACAT
CGCACTCGCCAATTGAAGCGGCGTCCATGTGGAGCTACGACTACAAGGGC
GACCTGTGCGCGCCCAATTGTGGCTATCTGGAGCGACACAAGCCGCTGCC
CGCCGACCTTAAGTATCGGCCCGGCGGAACCCAGTCAAAAAGTGCCAAAG
AATCGCGCATCCGGCGGCCGATGAACGCCTTCATGGTCTGGGCCAAGATC
GAGCGCAAGAAGCTGGCCGACGAGAATCCCGATCTGCATAATGCCGACCT
CAGCAAGATGTTGGGAAAAAAATGGCGATCGCTGACGCCGCAAGATCGCA
GACCCTACGTGGAGGAGGCGG
BS17896.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8404-PA | 2355 | Sox15-RA | 1..805 | 17..821 | 4025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox15-RA | 3651 | CG8404-RA | 1074..1878 | 17..821 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14203357..14204052 | 765..70 | 3480 | 100 | Minus |
| 2R | 25286936 | 2R | 14203163..14203220 | 821..764 | 290 | 100 | Minus |
| 2R | 25286936 | 2R | 14211288..14211340 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 13:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2027..2108 | 645..724 | 108 | 61 | Plus |
BS17896.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:50 Download gff for
BS17896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8404-PA | 1..805 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:55:04 Download gff for
BS17896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1074..1878 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:52:49 Download gff for
BS17896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1074..1878 | 17..821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:52:49 Download gff for
BS17896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14203163..14203219 | 765..821 | 100 | <- | Minus |
| 2R | 14203358..14204052 | 70..764 | 100 | <- | Minus |
| 2R | 14211288..14211340 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:55:04 Download gff for
BS17896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10090668..10090724 | 765..821 | 100 | <- | Minus |
| arm_2R | 10090863..10091557 | 70..764 | 100 | <- | Minus |
| arm_2R | 10098793..10098845 | 17..69 | 100 | | Minus |
BS17896.pep Sequence
Translation from 16 to 2370
> BS17896.pep
MEPSYDHEHPHHLLTNYNSKKYPHVSRTPEYSHSTGSDYPEHGGYLTDGR
LMHESNSDAGIYHVRQGSEHSSPSLHSPAIQSSGYENEHLNEAVLAAHSH
SHSPMPMVSSAYVGGGTASGSLINSNIPLLGGGGNSVLNKFLSHPHAGMV
GGGTGQMEDCTSHSPIEAASMWSYDYKGDLCAPNCGYLERHKPLPADLKY
RPGGTQSKSAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLG
KKWRSLTPQDRRPYVEEAERLRVIHMTEHPNYKYRPRRRKQSKLRAMQPG
GKEQSESSPNPGTGGSKSNPKLATPPLATASSSYTTPTDESTCNSTNQNH
GQSTPGGLYEQPLKPTYSPSSVDCYSNADSTEQIESLAANCPPALLNESS
PTGGGYDNSLLLKKLTKPSPSRAAKSRQEKLAKSEEKNKGSQSQGQSQQG
IYAATYPLAPTSVAVVAARGMYVTCNNRGLLDHGHSVKGTFYPPVSVSED
DNSTSMRNSISALQQHCNVVTSTPSSSGGTMPTSEMSSYTVSMADNCGNL
RLSMNELSGNEYLPSANAYGMQYEDFLRYQSNDMDYSTSAVEHKETTSDS
ASGQKCLKYPDTNQNYDDYEAEAYSNAMLPATAASYYTQLPYPPTSLAAF
PLQLAVPFQQTTSGAYGAQPIQSGYLHYGNYGGYEGMAQSQPQNQAPVHH
QQASHSAPPSLSVPPNQTVTSNSAAISMQQHHHHHFGPAPGMVGVGVGVG
VGVGVGEMLFEQQQRKDDEISNILAGVRKTCYSN*
BS17896.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:40:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox15-PA | 784 | CG8404-PA | 1..784 | 1..784 | 4182 | 100 | Plus |
| Sox21b-PB | 571 | CG32139-PB | 78..465 | 3..449 | 334 | 24.3 | Plus |
| Sox21b-PA | 571 | CG32139-PA | 78..465 | 3..449 | 334 | 24.3 | Plus |
| Sox21b-PC | 587 | CG32139-PC | 78..465 | 3..449 | 334 | 24.3 | Plus |
| D-PD | 382 | CG5893-PD | 138..260 | 211..326 | 322 | 45.5 | Plus |
