Clone Sequence Records
BS17901.complete Sequence
1058 bp assembled on 2010-02-09
GenBank Submission: KX805525
> BS17901.complete
GAAGTTATCAGTCGACATGCGCACAGCTGTTTTGCTGCCACTTTTGGCCC
TGCTGGCGGTGGCTCAGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAA
TGGCATACGTTCAAGCTGGAGCACCGCAAGAACTATCAGGATGAAACCGA
GGAGCGTTTCCGCCTCAAGATCTTCAATGAGAACAAGCACAAGATTGCCA
AGCACAACCAGCGATTCGCCGAGGGCAAGGTGAGCTTCAAACTGGCGGTC
AATAAGTACGCCGATTTGCTGCACCACGAATTCCGTCAGCTGATGAACGG
CTTCAACTACACTCTGCACAAGCAACTGCGTGCCGCCGATGAAAGCTTCA
AGGGAGTCACCTTCATCTCGCCGGCTCATGTGACGCTGCCCAAATCTGTG
GACTGGCGCACCAAGGGAGCTGTGACCGCCGTCAAGGATCAGGGACACTG
CGGCAGCTGCTGGGCCTTCTCCAGCACAGGCGCCCTCGAGGGTCAGCATT
TCCGCAAGTCCGGTGTCCTCGTCTCGCTGTCCGAGCAGAATCTGGTCGAT
TGCTCCACCAAGTACGGCAACAATGGATGCAACGGCGGTCTCATGGACAA
TGCCTTCCGCTATATTAAGGATAATGGAGGCATCGATACCGAGAAGTCCT
ATCCCTACGAGGCCATCGATGACTCGTGCCACTTTAACAAGGGCACAGTC
GGAGCCACCGATCGTGGATTCACCGATATTCCCCAGGGTGATGAGAAGAA
GATGGCCGAGGCTGTGGCCACCGTTGGTCCCGTTTCCGTCGCCATCGATG
CCTCCCACGAGTCGTTCCAGTTCTACTCGGAGGGCGTCTACAACGAGCCG
CAGTGTGATGCCCAGAATCTGGATCACGGTGTGCTGGTCGTTGGCTTCGG
CACCGACGAGTCCGGCGAGGATTACTGGCTGGTGAAGAACTCGTGGGGCA
CCACCTGGGGCGACAAGGGCTTCATCAAGATGCTGCGCAACAAGGAGAAC
CAGTGCGGCATCGCTAGCGCCTCCAGCTATCCCCTGGTCTAGAAGCTTTC
TAGACCAT
BS17901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:35:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp1-RC | 1116 | CG6692-PC | 91..1116 | 17..1042 | 5130 | 100 | Plus |
Cp1-RA | 1026 | CG6692-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Cp1-RE | 1017 | CG6692-PE | 90..1017 | 115..1042 | 4640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp1-RC | 1369 | CG6692-RC | 104..1130 | 17..1043 | 5135 | 100 | Plus |
Cp1-RA | 1486 | CG6692-RA | 221..1247 | 17..1043 | 5135 | 100 | Plus |
Cp1-RD | 1481 | CG6692-RD | 313..1242 | 114..1043 | 4650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:35:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13967029..13967742 | 330..1043 | 3570 | 100 | Plus |
2R | 25286936 | 2R | 13966753..13966969 | 114..330 | 1085 | 100 | Plus |
2R | 25286936 | 2R | 13962238..13962336 | 17..115 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:35:25 has no hits.
BS17901.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:37 Download gff for
BS17901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RC | 85..1116 | 7..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:26 Download gff for
BS17901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RC | 104..1129 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:16 Download gff for
BS17901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RA | 221..1246 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:37 Download gff for
BS17901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RC | 98..1132 | 7..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:20 Download gff for
BS17901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RA | 221..1246 | 17..1042 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:20 Download gff for
BS17901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13962238..13962336 | 17..115 | 100 | -> | Plus |
2R | 13966755..13966969 | 116..330 | 100 | -> | Plus |
2R | 13967030..13967741 | 331..1042 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:16 Download gff for
BS17901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9849743..9849841 | 17..115 | 100 | -> | Plus |
arm_2R | 9854260..9854474 | 116..330 | 100 | -> | Plus |
arm_2R | 9854535..9855246 | 331..1042 | 100 | | Plus |
BS17901.3prime Sequence
818 bp (740 high quality bases) assembled on 2007-05-30
> BS17901.3prime
ATGGTCTAGAAAGCTTCTAGACCAGGGGATAGCTGGAGGCGCTAGCGATG
CCGCACTGGTTCTCCTTGTTGCGCAGCATCTTGATGAAGCCCTTGTCGCC
CCAGGTGGTGCCCCACGAGTTCTTCACCAGCCAGTAATCCTCGCCGGACT
CGTCGGTGCCGAAGCCAACGACCAGCACACCGTGATCCAGATTCTGGGCA
TCACACTGCGGCTCGTTGTAGACGCCCTCCGAGTAGAACTGGAACGACTC
GTGGGAGGCATCGATGGCGACGGAAACGGGACCAACGGTGGCCACAGCCT
CGGCCATCTTCTTCTCATCACCCTGGGGAATATCGGTGAATCCACGATCG
GTGGCTCCGACTGTGCCCTTGTTAAAGTGGCACGAGTCATCGATGGCCTC
GTAGGGATAGGACTTCTCGGTATCGATGCCTCCATTATCCTTAATATAGC
GGAAGGCATTGTCCATGAGACCGCCGTTGCATCCATTGTTGCCGTACTTG
GTGGAGCAATCGACCAGATTCTGCTCGGACAGCGAGACGAGGACACCGGA
CTTGCGGAAATGCTGACCCTCGAGGGCGCCTGTGCTGGAGAAGGCCCAGC
AGCTGCCGCAGTGTCCCTGATCCTTGACGGCGGTCACAGCTCCCTTGGTG
CGCCAGTCCACAGATTTGGGCAGCGTCACATGAGCCGGCGAGATGAAGGT
GACTCCCTTGAAGCTTTCATCGGCGGCACGCAGTTGCTTGTGCAGAGTGT
ATTTGAAGCCGTTCATCAGCTGACGGAATTCGTGGTGCAGCAAATCGGCG
TACTTATTGACCGCCAGT
BS17901.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6692-PB | 1026 | Cp1-RB | 225..1026 | 818..17 | 3985 | 99.8 | Minus |
CG6692-PA | 1026 | Cp1-RA | 225..1026 | 818..17 | 3985 | 99.8 | Minus |
CG6692-PC | 1116 | Cp1-RC | 315..1116 | 818..17 | 3985 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp1-RD | 1481 | CG6692-RD | 440..1242 | 818..16 | 4000 | 99.9 | Minus |
Cp1-RE | 1662 | CG6692-RE | 621..1423 | 818..16 | 4000 | 99.9 | Minus |
Cp1-RC | 1369 | CG6692-RC | 328..1130 | 818..16 | 4000 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13967029..13967742 | 729..16 | 3570 | 100 | Minus |
2R | 25286936 | 2R | 13966880..13966969 | 818..729 | 435 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:10:24 has no hits.
BS17901.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:56 Download gff for
BS17901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6692-PC | 315..1116 | 17..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:44:13 Download gff for
BS17901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RC | 328..1132 | 13..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:52 Download gff for
BS17901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RC | 328..1132 | 13..818 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:52 Download gff for
BS17901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13966880..13966969 | 729..818 | 98 | -> | Minus |
2R | 13967030..13967744 | 13..728 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:44:13 Download gff for
BS17901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9854385..9854474 | 729..818 | 98 | -> | Minus |
arm_2R | 9854535..9855249 | 13..728 | 99 | | Minus |
BS17901.5prime Sequence
848 bp (742 high quality bases) assembled on 2007-05-30
> BS17901.5prime
GAAGTTATCACTCGACATGCGCACAGCTGTTTTGCTGCCACTTTTGGCCC
TGCTGGCGGTGGCTCAGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAA
TGGCATACGTTCAAGCTGGAGCACCGCAAGAACTATCAGGATGAAACCGA
GGAGCGTTTCCGCCTCAAGATCTTCAATGAGAACAAGCACAAGATTGCCA
AGCACAACCAGCGATTCGCCGAGGGCAAGGTGAGCTTCAAACTGGCGGTC
AATAAGTACGCCGATTTGCTGCACCACGAATTCCGTCAGCTGATGAACGG
CTTCAACTACACTCTGCACAAGCAACTGCGTGCCGCCGATGAAAGCTTCA
AGGGAGTCACCTTCATCTCGCCGGCTCATGTGACGCTGCCCAAATCTGTG
GACTGGCGCACCAAGGGAGCTGTGACCGCCGTCAAGGATCAGGGACACTG
CGGCAGCTGCTGGGCCTTCTCCAGCACAGGCGCCCTCGAGGGTCAGCATT
TCCGCAAGTCCGGTGTCCTCGTCTCGCTGTCCGAGCAGAATCTGGTCGAT
TGCTCCACCAAGTACGGCAACAATGGATGCAACGGCGGTCTCATGGACAA
TGCCTTCCGCTATATTAAGGATAATGGAGGCATCGATACCGAGAAGTCCT
ATCCCTACGAGGCCATCGATGACTCGTGCCACTTTAACAAGGGCACAGTC
GGAGCCACCGATCGTGGATTCACCGATATTCCCCAGGGTGATGAGAAGAA
GATGGCCGAGGCTGTGGCCACCGTTGGGCCCGTTTCCGTCGCCATCGATG
CCTCCCACAAGTCGTTCCAGTTCTACTCGGAGGGCGTCTACAACGAGC
BS17901.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6692-PB | 1026 | Cp1-RB | 1..832 | 17..848 | 4110 | 99.7 | Plus |
CG6692-PA | 1026 | Cp1-RA | 1..832 | 17..848 | 4110 | 99.7 | Plus |
CG6692-PC | 1116 | Cp1-RC | 91..922 | 17..848 | 4110 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp1-RC | 1369 | CG6692-RC | 104..935 | 17..848 | 4130 | 99.8 | Plus |
Cp1-RA | 1486 | CG6692-RA | 221..1052 | 17..848 | 4130 | 99.8 | Plus |
Cp1-RD | 1481 | CG6692-RD | 313..1047 | 114..848 | 3645 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13967029..13967547 | 330..848 | 2565 | 99.6 | Plus |
2R | 25286936 | 2R | 13966753..13966969 | 114..330 | 1085 | 100 | Plus |
2R | 25286936 | 2R | 13962238..13962336 | 17..115 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:52:11 has no hits.
BS17901.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:47:00 Download gff for
BS17901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6692-PC | 85..922 | 7..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:37 Download gff for
BS17901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RA | 215..1052 | 7..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:32 Download gff for
BS17901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RA | 215..1052 | 7..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:32 Download gff for
BS17901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13962232..13962336 | 7..115 | 96 | -> | Plus |
2R | 13966755..13966969 | 116..330 | 100 | -> | Plus |
2R | 13967030..13967547 | 331..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:37 Download gff for
BS17901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9849737..9849841 | 7..115 | 96 | -> | Plus |
arm_2R | 9854260..9854474 | 116..330 | 100 | -> | Plus |
arm_2R | 9854535..9855052 | 331..848 | 99 | | Plus |
BS17901.pep Sequence
Translation from 16 to 1041
> BS17901.pep
MRTAVLLPLLALLAVAQAVSFADVVMEEWHTFKLEHRKNYQDETEERFRL
KIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHHEFRQLMNGFNYTL
HKQLRAADESFKGVTFISPAHVTLPKSVDWRTKGAVTAVKDQGHCGSCWA
FSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYI
KDNGGIDTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAV
ATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESG
EDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASSYPLV*
BS17901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp1-PA | 341 | CG6692-PA | 1..341 | 1..341 | 1822 | 100 | Plus |
Cp1-PC | 371 | CG6692-PC | 31..371 | 1..341 | 1822 | 100 | Plus |
Cp1-PE | 338 | CG6692-PE | 31..338 | 34..341 | 1661 | 100 | Plus |
Cp1-PD | 249 | CG6692-PD | 1..249 | 93..341 | 1349 | 100 | Plus |
CG4847-PE | 390 | CG4847-PE | 79..390 | 26..341 | 621 | 41.7 | Plus |