Clone BS17901 Report

Search the DGRC for BS17901

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:179
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCp1-RA
Protein status:BS17901.pep: full length peptide match
Sequenced Size:1058

Clone Sequence Records

BS17901.complete Sequence

1058 bp assembled on 2010-02-09

GenBank Submission: KX805525

> BS17901.complete
GAAGTTATCAGTCGACATGCGCACAGCTGTTTTGCTGCCACTTTTGGCCC
TGCTGGCGGTGGCTCAGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAA
TGGCATACGTTCAAGCTGGAGCACCGCAAGAACTATCAGGATGAAACCGA
GGAGCGTTTCCGCCTCAAGATCTTCAATGAGAACAAGCACAAGATTGCCA
AGCACAACCAGCGATTCGCCGAGGGCAAGGTGAGCTTCAAACTGGCGGTC
AATAAGTACGCCGATTTGCTGCACCACGAATTCCGTCAGCTGATGAACGG
CTTCAACTACACTCTGCACAAGCAACTGCGTGCCGCCGATGAAAGCTTCA
AGGGAGTCACCTTCATCTCGCCGGCTCATGTGACGCTGCCCAAATCTGTG
GACTGGCGCACCAAGGGAGCTGTGACCGCCGTCAAGGATCAGGGACACTG
CGGCAGCTGCTGGGCCTTCTCCAGCACAGGCGCCCTCGAGGGTCAGCATT
TCCGCAAGTCCGGTGTCCTCGTCTCGCTGTCCGAGCAGAATCTGGTCGAT
TGCTCCACCAAGTACGGCAACAATGGATGCAACGGCGGTCTCATGGACAA
TGCCTTCCGCTATATTAAGGATAATGGAGGCATCGATACCGAGAAGTCCT
ATCCCTACGAGGCCATCGATGACTCGTGCCACTTTAACAAGGGCACAGTC
GGAGCCACCGATCGTGGATTCACCGATATTCCCCAGGGTGATGAGAAGAA
GATGGCCGAGGCTGTGGCCACCGTTGGTCCCGTTTCCGTCGCCATCGATG
CCTCCCACGAGTCGTTCCAGTTCTACTCGGAGGGCGTCTACAACGAGCCG
CAGTGTGATGCCCAGAATCTGGATCACGGTGTGCTGGTCGTTGGCTTCGG
CACCGACGAGTCCGGCGAGGATTACTGGCTGGTGAAGAACTCGTGGGGCA
CCACCTGGGGCGACAAGGGCTTCATCAAGATGCTGCGCAACAAGGAGAAC
CAGTGCGGCATCGCTAGCGCCTCCAGCTATCCCCTGGTCTAGAAGCTTTC
TAGACCAT

BS17901.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cp1-RC 1116 CG6692-PC 91..1116 17..1042 5130 100 Plus
Cp1-RA 1026 CG6692-PA 1..1026 17..1042 5130 100 Plus
Cp1-RE 1017 CG6692-PE 90..1017 115..1042 4640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cp1-RC 1369 CG6692-RC 104..1130 17..1043 5135 100 Plus
Cp1-RA 1486 CG6692-RA 221..1247 17..1043 5135 100 Plus
Cp1-RD 1481 CG6692-RD 313..1242 114..1043 4650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13967029..13967742 330..1043 3570 100 Plus
2R 25286936 2R 13966753..13966969 114..330 1085 100 Plus
2R 25286936 2R 13962238..13962336 17..115 495 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:35:25 has no hits.

BS17901.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:37 Download gff for BS17901.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 85..1116 7..1042 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:26 Download gff for BS17901.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 104..1129 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:16 Download gff for BS17901.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RA 221..1246 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:37 Download gff for BS17901.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 98..1132 7..1046 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:20 Download gff for BS17901.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RA 221..1246 17..1042 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:20 Download gff for BS17901.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13962238..13962336 17..115 100 -> Plus
2R 13966755..13966969 116..330 100 -> Plus
2R 13967030..13967741 331..1042 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:16 Download gff for BS17901.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9849743..9849841 17..115 100 -> Plus
arm_2R 9854260..9854474 116..330 100 -> Plus
arm_2R 9854535..9855246 331..1042 100   Plus

BS17901.3prime Sequence

818 bp (740 high quality bases) assembled on 2007-05-30

> BS17901.3prime
ATGGTCTAGAAAGCTTCTAGACCAGGGGATAGCTGGAGGCGCTAGCGATG
CCGCACTGGTTCTCCTTGTTGCGCAGCATCTTGATGAAGCCCTTGTCGCC
CCAGGTGGTGCCCCACGAGTTCTTCACCAGCCAGTAATCCTCGCCGGACT
CGTCGGTGCCGAAGCCAACGACCAGCACACCGTGATCCAGATTCTGGGCA
TCACACTGCGGCTCGTTGTAGACGCCCTCCGAGTAGAACTGGAACGACTC
GTGGGAGGCATCGATGGCGACGGAAACGGGACCAACGGTGGCCACAGCCT
CGGCCATCTTCTTCTCATCACCCTGGGGAATATCGGTGAATCCACGATCG
GTGGCTCCGACTGTGCCCTTGTTAAAGTGGCACGAGTCATCGATGGCCTC
GTAGGGATAGGACTTCTCGGTATCGATGCCTCCATTATCCTTAATATAGC
GGAAGGCATTGTCCATGAGACCGCCGTTGCATCCATTGTTGCCGTACTTG
GTGGAGCAATCGACCAGATTCTGCTCGGACAGCGAGACGAGGACACCGGA
CTTGCGGAAATGCTGACCCTCGAGGGCGCCTGTGCTGGAGAAGGCCCAGC
AGCTGCCGCAGTGTCCCTGATCCTTGACGGCGGTCACAGCTCCCTTGGTG
CGCCAGTCCACAGATTTGGGCAGCGTCACATGAGCCGGCGAGATGAAGGT
GACTCCCTTGAAGCTTTCATCGGCGGCACGCAGTTGCTTGTGCAGAGTGT
ATTTGAAGCCGTTCATCAGCTGACGGAATTCGTGGTGCAGCAAATCGGCG
TACTTATTGACCGCCAGT

BS17901.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6692-PB 1026 Cp1-RB 225..1026 818..17 3985 99.8 Minus
CG6692-PA 1026 Cp1-RA 225..1026 818..17 3985 99.8 Minus
CG6692-PC 1116 Cp1-RC 315..1116 818..17 3985 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cp1-RD 1481 CG6692-RD 440..1242 818..16 4000 99.9 Minus
Cp1-RE 1662 CG6692-RE 621..1423 818..16 4000 99.9 Minus
Cp1-RC 1369 CG6692-RC 328..1130 818..16 4000 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13967029..13967742 729..16 3570 100 Minus
2R 25286936 2R 13966880..13966969 818..729 435 98.9 Minus
Blast to na_te.dros performed on 2015-02-12 00:10:24 has no hits.

BS17901.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:56 Download gff for BS17901.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6692-PC 315..1116 17..818 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:44:13 Download gff for BS17901.3prime
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 328..1132 13..818 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:52 Download gff for BS17901.3prime
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 328..1132 13..818 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:52 Download gff for BS17901.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13966880..13966969 729..818 98 -> Minus
2R 13967030..13967744 13..728 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:44:13 Download gff for BS17901.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9854385..9854474 729..818 98 -> Minus
arm_2R 9854535..9855249 13..728 99   Minus

BS17901.5prime Sequence

848 bp (742 high quality bases) assembled on 2007-05-30

> BS17901.5prime
GAAGTTATCACTCGACATGCGCACAGCTGTTTTGCTGCCACTTTTGGCCC
TGCTGGCGGTGGCTCAGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAA
TGGCATACGTTCAAGCTGGAGCACCGCAAGAACTATCAGGATGAAACCGA
GGAGCGTTTCCGCCTCAAGATCTTCAATGAGAACAAGCACAAGATTGCCA
AGCACAACCAGCGATTCGCCGAGGGCAAGGTGAGCTTCAAACTGGCGGTC
AATAAGTACGCCGATTTGCTGCACCACGAATTCCGTCAGCTGATGAACGG
CTTCAACTACACTCTGCACAAGCAACTGCGTGCCGCCGATGAAAGCTTCA
AGGGAGTCACCTTCATCTCGCCGGCTCATGTGACGCTGCCCAAATCTGTG
GACTGGCGCACCAAGGGAGCTGTGACCGCCGTCAAGGATCAGGGACACTG
CGGCAGCTGCTGGGCCTTCTCCAGCACAGGCGCCCTCGAGGGTCAGCATT
TCCGCAAGTCCGGTGTCCTCGTCTCGCTGTCCGAGCAGAATCTGGTCGAT
TGCTCCACCAAGTACGGCAACAATGGATGCAACGGCGGTCTCATGGACAA
TGCCTTCCGCTATATTAAGGATAATGGAGGCATCGATACCGAGAAGTCCT
ATCCCTACGAGGCCATCGATGACTCGTGCCACTTTAACAAGGGCACAGTC
GGAGCCACCGATCGTGGATTCACCGATATTCCCCAGGGTGATGAGAAGAA
GATGGCCGAGGCTGTGGCCACCGTTGGGCCCGTTTCCGTCGCCATCGATG
CCTCCCACAAGTCGTTCCAGTTCTACTCGGAGGGCGTCTACAACGAGC

BS17901.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6692-PB 1026 Cp1-RB 1..832 17..848 4110 99.7 Plus
CG6692-PA 1026 Cp1-RA 1..832 17..848 4110 99.7 Plus
CG6692-PC 1116 Cp1-RC 91..922 17..848 4110 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
Cp1-RC 1369 CG6692-RC 104..935 17..848 4130 99.8 Plus
Cp1-RA 1486 CG6692-RA 221..1052 17..848 4130 99.8 Plus
Cp1-RD 1481 CG6692-RD 313..1047 114..848 3645 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13967029..13967547 330..848 2565 99.6 Plus
2R 25286936 2R 13966753..13966969 114..330 1085 100 Plus
2R 25286936 2R 13962238..13962336 17..115 495 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:52:11 has no hits.

BS17901.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:47:00 Download gff for BS17901.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6692-PC 85..922 7..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:37 Download gff for BS17901.5prime
Subject Subject Range Query Range Percent Splice Strand
Cp1-RA 215..1052 7..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:32 Download gff for BS17901.5prime
Subject Subject Range Query Range Percent Splice Strand
Cp1-RA 215..1052 7..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:32 Download gff for BS17901.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13962232..13962336 7..115 96 -> Plus
2R 13966755..13966969 116..330 100 -> Plus
2R 13967030..13967547 331..848 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:37 Download gff for BS17901.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9849737..9849841 7..115 96 -> Plus
arm_2R 9854260..9854474 116..330 100 -> Plus
arm_2R 9854535..9855052 331..848 99   Plus

BS17901.pep Sequence

Translation from 16 to 1041

> BS17901.pep
MRTAVLLPLLALLAVAQAVSFADVVMEEWHTFKLEHRKNYQDETEERFRL
KIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHHEFRQLMNGFNYTL
HKQLRAADESFKGVTFISPAHVTLPKSVDWRTKGAVTAVKDQGHCGSCWA
FSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYI
KDNGGIDTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAV
ATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESG
EDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASSYPLV*

BS17901.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cp1-PA 341 CG6692-PA 1..341 1..341 1822 100 Plus
Cp1-PC 371 CG6692-PC 31..371 1..341 1822 100 Plus
Cp1-PE 338 CG6692-PE 31..338 34..341 1661 100 Plus
Cp1-PD 249 CG6692-PD 1..249 93..341 1349 100 Plus
CG4847-PE 390 CG4847-PE 79..390 26..341 621 41.7 Plus