Clone BS17915 Report

Search the DGRC for BS17915

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:179
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG33494-RA
Protein status:BS17915.pep: full length peptide match
Sequenced Size:293

Clone Sequence Records

BS17915.complete Sequence

293 bp assembled on 2010-02-09

GenBank Submission: KX802990

> BS17915.complete
GAAGTTATCAGTCGACATGCACGCGACTGTCATCTCGGCTTTCGGGATAG
TATATCTACTGTTCCTGTTCCTGGGACATCTTTCTGCTCAAATTACCGTG
AGTCCAAGCACGTTCAATCCTCTTATGGTCGACAGCAAGCCGGAACCCGC
CACAAAAAACTCTTGGCACATTAATAATTATTATCCAAAAAGGTGGTTAA
TAAATATGAATAGTTCCGATAAGAAACTCAGACAATCCTACGATTACCGC
CCGCTGCACAATCCCCTCTATGGGTAAAAGCTTTCTAGACCAT

BS17915.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-RB 261 CG33494-PB 1..261 17..277 1305 100 Plus
CG33494-RA 261 CG33494-PA 1..261 17..277 1305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-RB 849 CG33494-RB 55..315 17..277 1305 100 Plus
CG33494-RA 751 CG33494-RA 55..315 17..277 1305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25494215..25494411 213..17 985 100 Minus
3R 32079331 3R 25494015..25494080 277..212 330 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:59:59 has no hits.

BS17915.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:10 Download gff for BS17915.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 1..261 17..277 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:04 Download gff for BS17915.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 55..313 17..275 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:27 Download gff for BS17915.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 55..313 17..275 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:10 Download gff for BS17915.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 51..321 9..283 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:24 Download gff for BS17915.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 55..313 17..275 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:24 Download gff for BS17915.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25494017..25494078 214..275 100 <- Minus
3R 25494215..25494411 17..213 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:27 Download gff for BS17915.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21319739..21319800 214..275 100 <- Minus
arm_3R 21319937..21320133 17..213 100   Minus

BS17915.3prime Sequence

291 bp (291 high quality bases) assembled on 2007-05-30

> BS17915.3prime
ATGGTCTAGAAAGCTTTTACCCTTAGAGGGGATTGTGCAGCGGGCGGTAA
TCGTAGGATTGTCTGAGTTTCTTATCGGAACTATTCATATTTATTATCCA
CCTTTTTGGATAATAATTATTAATGTGCCAAGAGTTTTTTGTGGCGGGTT
CCGGCTTGCTGTCGACCATAAGAGGATTGAACGTGCTTGGACTCACGGTA
ATTTGAGCAGAAAGATGTCCCAGGAACAGGAACAGTAGATATACTATCCC
GAAAGCCGAGATGACAGTCGCGTGCATGTCGACTGATAACT

BS17915.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-PA 261 CG33494-RA 1..261 277..17 1255 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-RB 849 CG33494-RB 55..315 277..17 1275 99.2 Minus
CG33494-RA 751 CG33494-RA 55..315 277..17 1275 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25494215..25494411 81..277 970 99.5 Plus
3R 32079331 3R 25494015..25494080 17..82 315 98.5 Plus
Blast to na_te.dros performed on 2015-02-13 06:47:46 has no hits.

BS17915.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:00 Download gff for BS17915.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33494-PA 1..261 17..277 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:37 Download gff for BS17915.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 51..321 11..285 96   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:16 Download gff for BS17915.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 51..321 11..285 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:16 Download gff for BS17915.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25494215..25494415 81..285 97   Plus
3R 25494009..25494078 11..80 94 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:37 Download gff for BS17915.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21319731..21319800 11..80 94 <- Plus
arm_3R 21319937..21320137 81..285 97   Plus

BS17915.5prime Sequence

291 bp (291 high quality bases) assembled on 2007-05-30

> BS17915.5prime
GAAGTTATCCCTCTACATGCACGCGACTGTCATCTCGGCTTTCGGGATAG
TATATCTACTGTTCCTGTTCCTGGGACATCTTTCTGCTCAAATTACCGTG
AGTCCAAGCACGTTCAATCCTCTTATGGTCGACAGCAAGCCGGAACCCGC
CACAAAAAACTCTTGGCACATTAATAATTATTATCCAAAAAGGTGGTTAA
TAAATATGAATAGTTCCGATAAGAAACTCAGACAATCCTACGATTACCGC
CCGCTGCACAATCCCCTCTATGGGTAAAAGCTTTCTAGACC

BS17915.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-PA 261 CG33494-RA 1..261 17..277 1305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 13:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-RB 849 CG33494-RB 55..315 17..277 1305 100 Plus
CG33494-RA 751 CG33494-RA 55..315 17..277 1305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 13:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25494215..25494411 213..17 985 100 Minus
3R 32079331 3R 25494015..25494080 277..212 330 100 Minus
Blast to na_te.dros performed on 2015-02-05 13:59:50 has no hits.

BS17915.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:04 Download gff for BS17915.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33494-PA 1..261 17..277 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:10:58 Download gff for BS17915.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 55..321 17..283 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:16:15 Download gff for BS17915.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 55..321 17..283 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:16:15 Download gff for BS17915.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25494009..25494078 214..283 95 <- Minus
3R 25494215..25494411 17..213 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:10:58 Download gff for BS17915.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21319731..21319800 214..283 95 <- Minus
arm_3R 21319937..21320133 17..213 100   Minus

BS17915.pep Sequence

Translation from 16 to 276

> BS17915.pep
MHATVISAFGIVYLLFLFLGHLSAQITVSPSTFNPLMVDSKPEPATKNSW
HINNYYPKRWLINMNSSDKKLRQSYDYRPLHNPLYG*

BS17915.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-PB 86 CG33494-PB 1..86 1..86 465 100 Plus
CG33494-PA 86 CG33494-PA 1..86 1..86 465 100 Plus