Clone Sequence Records
BS17916.complete Sequence
1625 bp assembled on 2009-12-07
GenBank Submission: KX802651
> BS17916.complete
GAAGTTATCAGTCGACATGGCAAACATTGGTCGTTACATAGAAAGAAATC
CGGGAATACGGGCTGCAGGATTGACATCGACCGTGCAATTTAATGGGGCC
AAGGATTGTCTGTTCGTCGTGAGTTTGGAGGAGGAGGCCGAGGATCGTAT
AAGGGCTCTGTGTCGTAGAAGTCGACCCAAACCAGCCAAACGAACTCCCA
AGCTGCCCACCCATCAAATAGGTGACATTCTCAATAATGAAAATCCGGGA
CTCTTTGCCGAGCTTCAAAATAAATTTCGCGAGAATATGTTCCATAAAAA
GCCCGGTTTGGGCGAAGCAAGAGAAACTAACTCAAAACCGAGCTATGTAA
CGAATTTGAGTCACACCTTTGGTAAAATCACGCAATCAAATTGCAATGAT
TCTTTGTACTCTATCGTCCTGCCACCAAAATCAGCCGAGCAGGTCAATCG
AGAGTATGGCGAATACCATGATAAACATATTATCAGTCATAATCACTACT
TTCCCGCCGAACAGATTAATCGCAGATACTCAAAGCCCTTCAATCGTTTT
AATACTTTCGGCTTGCCACCGACTCTCGATCCTTCAGGTATCAAGATGAA
ACACTGCTTGGAGGAGGGTGAGGAGCACTTGAAAATAGTCAAAAAACCCC
AAAAGGACATTGACGATCGCACTAAAGGACCTTTGGGCAAAAAGTATTCG
TGGTATCCCTACCAGATACCCGAAAATATGACCTTTGGTCGCACGCTGCC
TCGGGAAACCGATGTCCGATCTCTGCTAGAATACACCTCACCCTCCATAA
AGTCCGAGAAATTAGCGATTGCCGTGAGTCACCTAAATATGCTGCGCAAA
ATGCTCCAGGAGCGGGACGACTTTAATATGAACCAGGTGATCTCGGCTTT
GGGAAAAAAGGATACGGAGGGGCAGCGTCAACTGCCACTGGACGAGGTCA
TTAACGTGTTGCACAAGCTAAGTATTCCGGCAGATGCGGAAAAGATTCGC
AACGCTGCGTCCCACTTTCAGTTGTTTGTGGACGAGGGATGCTGCTCGGA
AAAGGTGAAATACGAGGAACTATGCGATCTCCTTTCGATCCTGAAATCTC
TGCCCTTGATTGGATCCATTACACCCATGCCAAAGGTGACGTACAACCAG
GATACAGCCTATCGTCAGTTGTGTGCTGATTTGATGAAAAAACCCCCAGA
GGGACCGCAATTCAAAACTGCGAAAAAGGCGTCCATTAAACAGGACATGA
ATGCAGCACCTTTCAAAGACTTTAATAGTCCGCAAAAGGCGCCTATTGAA
CAGGATATGGATGAAACACGGTCCAGGGACTACAAAACTTCGCAAAAGAC
GCCCATTCAACAGGATATGGATGACACACGTGTCGGGGACGTAATTAATC
CAGAGTTTTCTACCTTATGTGGCCTATGGCCAAGTGATTTTAAGGCATTG
CGTAGCAAGGATGAAATCGAACGAATATTCAAGGACATCGTCTCGAAGGA
AGACTTTCAAACAATCTGGCTGAGTCTAATGGATGAGCAGAAGGATCAAA
ACGAAATGGCATCCGTTGCACAATTTCGTGCTCAGATGAAGAAGAACATT
GAATCATAAAAGCTTTCTAGACCAT
BS17916.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-RA | 1593 | CG33490-PA | 1..1593 | 17..1609 | 7965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-RA | 1745 | CG33490-RA | 63..1655 | 17..1609 | 7965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11572887..11573796 | 1609..700 | 4550 | 100 | Minus |
| 3L | 28110227 | 3L | 11574093..11574601 | 525..17 | 2545 | 100 | Minus |
| 3L | 28110227 | 3L | 11573855..11574032 | 701..524 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:38:18 has no hits.
BS17916.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:47 Download gff for
BS17916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 1..1593 | 17..1609 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:05 Download gff for
BS17916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 63..1653 | 17..1607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:24 Download gff for
BS17916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 63..1653 | 17..1607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:20 Download gff for
BS17916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 63..1653 | 17..1607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:19 Download gff for
BS17916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 63..1653 | 17..1607 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:19 Download gff for
BS17916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11572889..11573796 | 700..1607 | 100 | <- | Minus |
| 3L | 11573857..11574030 | 526..699 | 100 | <- | Minus |
| 3L | 11574093..11574601 | 17..525 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:24 Download gff for
BS17916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11565989..11566896 | 700..1607 | 100 | <- | Minus |
| arm_3L | 11566957..11567130 | 526..699 | 100 | <- | Minus |
| arm_3L | 11567193..11567701 | 17..525 | 100 | | Minus |
BS17916.3prime Sequence
750 bp (667 high quality bases) assembled on 2007-05-30
> BS17916.3prime
ATGGTCTAGAAAGCTTTTATGATTCAATGTTCTTCTTCATCTGAGCACGA
AATTGTGCAACGGATGCCATTTCGTTTTGATCCTTCTGCTCATCCATTAG
ACTCAGCCAGATTGTTTGAAAGTCTTCCTTCGAGACGATGTCCTTGAATA
TTCGTTCGATTTCATCCTTGCTACGCAATGCCTTAAAATCACTTGGCCAT
AGGCCACATAAGGTAGAAAACTCTGGATTAATTACGTCCCCGACACGTGT
GTCATCCATATCCTGTTGAATGGGCGTCTTTTGCGAAGTTTTGTAGTCCC
TGGACCGTGTTTCATCCATATCCTGTTCAATAGGCGCCTTTTGCGGACTA
TTAAAGTCTTTGAAAGGTGCTGCATTCATGTCCTGTTTAATGGACGCCTT
TTTCGCAGTTTTGAATTGCGGTCCCTCTGGGGGTTTTTTCATCAAATCAG
CACACAACTGACGATAGGCTGTATCCTGGTTGTACGTCACCTTTGGCATG
GGTGTAATGGATCCAATCAAGGGCAGAGATTTCAGGATCGAAAGGAGATC
GCATAGTTCCTCGTATTTCACCTTTTCCGAGCAGCATCCCTCGTCCACAA
ACAACTGAAAGTGGGACGCAGCGTTGCGAATCTTTTCCGCATCTGCCGGA
ATACTTAGCTTGTGCAACACGTTAATGACCTCGTCCAGTGGCAGTTGACG
CTGCCCCTCCGTATCCTTTTTTCCCAAAGCCGAGATCACCTGGTTCATAT
BS17916.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-PA | 1593 | CG33490-RA | 860..1593 | 750..17 | 3670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-RA | 1745 | CG33490-RA | 922..1655 | 750..17 | 3670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11572887..11573620 | 17..750 | 3670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:48:52 has no hits.
BS17916.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:08 Download gff for
BS17916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-PA | 860..1593 | 17..750 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:22:00 Download gff for
BS17916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 922..1655 | 17..750 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:02 Download gff for
BS17916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 922..1655 | 17..750 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:02 Download gff for
BS17916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11572887..11573620 | 17..750 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:22:00 Download gff for
BS17916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11565987..11566720 | 17..750 | 100 | | Plus |
BS17916.5prime Sequence
831 bp (803 high quality bases) assembled on 2007-05-30
> BS17916.5prime
GAAGTTATCACTCTACATGGCAAACATTGGTCGTTACATAGAAAGAAATC
CGGGAATACGGGCTGCAGGATTGACATCGACCGTGCAATTTAATGGGGCC
AAGGATTGTCTGTTCGTCGTGAGTTTGGAGGAGGAGGCCGAGGATCGTAT
AAGGGCTCTGTGTCGTAGAAGTCGACCCAAACCAGCCAAACGAACTCCCA
AGCTGCCCACCCATCAAATAGGTGACATTCTCAATAATGAAAATCCGGGA
CTCTTTGCCGAGCTTCAAAATAAATTTCGCGAGAATATGTTCCATAAAAA
GCCCGGTTTGGGCGAAGCAAGAGAAACTAACTCAAAACCGAGCTATGTAA
CGAATTTGAGTCACACCTTTGGTAAAATCACGCAATCAAATTGCAATGAT
TCTTTGTACTCTATCGTCCTGCCACCAAAATCAGCCGAGCAGGTCAATCG
AGAGTATGGCGAATACCATGATAAACATATTATCAGTCATAATCACTACT
TTCCCGCCGAACAGATTAATCGCAGATACTCAAAGCCCTTCAATCGTTTT
AATACTTTCGGCTTGCCACCGACTCTCGATCCTTCAGGTATCAAGATGAA
ACACTGCTTGGAGGAGGGTGAGGAGCACTTGAAAATAGTCAAAAAACCCC
AAAAGGACATTGACGATCGCACTAAAGGACCTTTGGGCAAAAAGTATTCG
TGGTATCCCTACCAGATACCCGAAAATATGACCTTTGGTCGCACGCTGCC
TCGGGAAACCGATGTCCGATCTCTGCTAGAATACACCTCACCCTCCATAA
AGTCCGAGAAATTAGCGATTGCCGTGAGTCA
BS17916.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-PA | 1593 | CG33490-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-RA | 1745 | CG33490-RA | 63..877 | 17..831 | 4075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11574093..11574601 | 525..17 | 2545 | 100 | Minus |
| 3L | 28110227 | 3L | 11573855..11574032 | 701..524 | 890 | 100 | Minus |
| 3L | 28110227 | 3L | 11573665..11573796 | 831..700 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:52:58 has no hits.
BS17916.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:13 Download gff for
BS17916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:44 Download gff for
BS17916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 55..876 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:30 Download gff for
BS17916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 55..876 | 9..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:30 Download gff for
BS17916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11573666..11573796 | 700..830 | 100 | <- | Minus |
| 3L | 11573857..11574030 | 526..699 | 100 | <- | Minus |
| 3L | 11574093..11574609 | 9..525 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:44 Download gff for
BS17916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11566766..11566896 | 700..830 | 100 | <- | Minus |
| arm_3L | 11566957..11567130 | 526..699 | 100 | <- | Minus |
| arm_3L | 11567193..11567709 | 9..525 | 99 | | Minus |
BS17916.pep Sequence
Translation from 16 to 1608
> BS17916.pep
MANIGRYIERNPGIRAAGLTSTVQFNGAKDCLFVVSLEEEAEDRIRALCR
RSRPKPAKRTPKLPTHQIGDILNNENPGLFAELQNKFRENMFHKKPGLGE
ARETNSKPSYVTNLSHTFGKITQSNCNDSLYSIVLPPKSAEQVNREYGEY
HDKHIISHNHYFPAEQINRRYSKPFNRFNTFGLPPTLDPSGIKMKHCLEE
GEEHLKIVKKPQKDIDDRTKGPLGKKYSWYPYQIPENMTFGRTLPRETDV
RSLLEYTSPSIKSEKLAIAVSHLNMLRKMLQERDDFNMNQVISALGKKDT
EGQRQLPLDEVINVLHKLSIPADAEKIRNAASHFQLFVDEGCCSEKVKYE
ELCDLLSILKSLPLIGSITPMPKVTYNQDTAYRQLCADLMKKPPEGPQFK
TAKKASIKQDMNAAPFKDFNSPQKAPIEQDMDETRSRDYKTSQKTPIQQD
MDDTRVGDVINPEFSTLCGLWPSDFKALRSKDEIERIFKDIVSKEDFQTI
WLSLMDEQKDQNEMASVAQFRAQMKKNIES*
BS17916.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-PA | 530 | CG33490-PA | 1..530 | 1..530 | 2787 | 100 | Plus |
| CG33489-PB | 497 | CG33489-PB | 1..489 | 1..524 | 960 | 40.6 | Plus |
| CG33489-PA | 497 | CG33489-PA | 1..489 | 1..524 | 960 | 40.6 | Plus |
| CG32086-PA | 491 | CG32086-PA | 1..488 | 1..530 | 908 | 40.1 | Plus |
| CG32086-PB | 475 | CG32086-PB | 1..472 | 1..530 | 861 | 39.4 | Plus |
