Clone BS17917 Report

Search the DGRC for BS17917

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:179
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG7573-RB
Protein status:BS17917.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17917.3prime Sequence

737 bp (736 high quality bases) assembled on 2007-05-30

> BS17917.3prime
ATGGTCTAGAAAGCTTTCATGCTGTGGAGACACCATTGATCATATTCAAA
CGCTGCAGATTATCGATGCGTTGCAGGACCGATGGCCGTAGACGATGCCA
CATGAGGTAGCACTGGTCTACATAGGGAAATTCGTAATCATCCGAAAAAA
GTTTGAGCAAAGCGGCCCTCATCGGTAGTCCGTAACCTCGGCGATTGACA
TAGGCATCGGCGGCGTACTCAAAGTGACGTATACAAAAGAACACTATCCA
AGTGGAAATGTCATGATAGATGGGCATTAGATACTTGTACACCAGCCAAA
AGCCCACCGAACTGGGATAGAATGTCGTAAAGCCCGCGGCCGCATACAAC
GTTATCCACCTGTTACAGATTCCGAAGAGTAGTAGATATATCAAGAGATA
AAAGTAAATCAATGCCAGTCCCTTTGCCACATGCCACAGTTGCCAATGGG
CCAGTTGATGGGCCACAAAGGCAGCCAACTGCTCATCATTCAGACCAGCA
CCCATCTGACCCCAGTCGAAATCATCGGAGCTAAATCCACGGTTCCACTT
CAGATTATCGTGGATATCTAAACGCAGGCAACAGCAGCATCCCATTACCC
AGGCCGTCGGACGACCCACATGGAAGGTGTGAACCATATAGACCCGGCCG
GGAAAATTAAAGTCGTCCAATACCGCTTTCAGGCTATTATCCATATCGGT
ACTATTCATTTTGCGACTCTTGCCCAAACAGGGCACT

BS17917.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-PA 1530 CG7573-RA 810..1530 737..17 3605 100 Minus
CG7573-PB 1434 CG7573-RB 714..1434 737..17 3605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-RB 1523 CG7573-RB 764..1484 737..17 3605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11312638..11313358 737..17 3605 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:12:18 has no hits.

BS17917.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:17 Download gff for BS17917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7573-PB 714..1434 17..737 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:46 Download gff for BS17917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 764..1489 12..737 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:29 Download gff for BS17917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 764..1489 12..737 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:29 Download gff for BS17917.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11312638..11313363 12..737 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:46 Download gff for BS17917.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11305738..11306463 12..737 99   Minus

BS17917.5prime Sequence

814 bp (778 high quality bases) assembled on 2007-05-30

> BS17917.5prime
GAAGTTATCAGTCGACATGAACTCATTCGCACTTTATCAAGATCCTTTGC
GTGGTGAGGTCCTAAAAATATCGGGAAATCAGATCGGCATGAGTGTGGTT
CCCCGGAAACTTAGTTTCTCGGATCCGATTCTTTTGCGGCACATCCTCTG
TCTGGTGATAGTGGTGCACAACAGTTTTCATCTCATCCTCTGTTGCAGGC
AGTTGAAATTGTGCAAAAGGACTTCCGTTCCGCCGAAGCAAATGGAGGGC
ATTTTGTCGCAAGAAGCCTTTCAGGCCTCCAAGGATAAACAGCTTCATGC
CTCATCCCTTGAGATATTCAATATAGCAATAGATACATTATATAGCTGCC
TTGATCTGTATCTTTGCACTCTGGCTTTCCTCTGGAAATTGACGGTAGGT
TGGTATCACTATGCGGACAGCACTTGGCTGAATGTGACATTTATGACTGT
ATTTTCAACGTACTTGGTTGTCCGGAAGTTGCCATCACTGTTTTACGAGA
AATTGGTCCTGGATCCGCGATACAATGTGGATCCTGAAAAGACGCCGCCC
TTGTTGGGTTTGATTTGTGCGCTGGTTTTTGTCGTCGTTTTCCTACAGGT
TGCCGTCATTCCGCTGACTGCGATTTTCATGGCTATTCATATGTTAAGCG
AGTGGTATTTCACACTATTCGTTTGGCTGGGTCTGGTGGGTTTGTCCGTA
CTGGTATTGGCATTTGTTGGACTGTTTGGAGTGCCCTGTTTGGGCAAGAG
TCGCAAAATGAATAGTACCGATATGGATAATACCCTGAAAGCGGTATTGG
ACGACTTTAATTTT

BS17917.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-PB 1434 CG7573-RB 1..798 17..814 3965 99.8 Plus
CG7573-PA 1530 CG7573-RA 121..894 41..814 3845 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-RB 1523 CG7573-RB 51..848 17..814 3975 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11312125..11312452 272..599 1640 100 Plus
3L 28110227 3L 11311797..11312055 17..275 1295 100 Plus
3L 28110227 3L 11312504..11312722 596..814 1080 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 07:15:04 has no hits.

BS17917.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:21 Download gff for BS17917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7573-PB 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:50 Download gff for BS17917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 51..848 17..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:36 Download gff for BS17917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 51..848 17..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:36 Download gff for BS17917.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11311797..11312054 17..274 100 -> Plus
3L 11312128..11312451 275..598 100 -> Plus
3L 11312507..11312722 599..814 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:50 Download gff for BS17917.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11304897..11305154 17..274 100 -> Plus
arm_3L 11305228..11305551 275..598 100 -> Plus
arm_3L 11305607..11305822 599..814 99   Plus

BS17917.complete Sequence

1466 bp assembled on 2007-06-21

GenBank Submission: KX805131

> BS17917.complete
GAAGTTATCAGTCGACATGAACTCATTCGCACTTTATCAAGATCCTTTGC
GTGGTGAGGTCCTAAAAATATCGGGAAATCAGATCGGCATGAGTGTGGTT
CCCCGGAAACTTAGTTTCTCGGATCCGATTCTTTTGCGGCACATCCTCTG
TCTGGTGATAGTGGTGCACAACAGTTTTCATCTCATCCTCTGTTGCAGGC
AGTTGAAATTGTGCAAAAGGACTTCCGTTCCGCCGAAGCAAATGGAGGGC
ATTTTGTCGCAAGAAGCCTTTCAGGCCTCCAAGGATAAACAGCTTCATGC
CTCATCCCTTGAGATATTCAATATAGCAATAGATACATTATATAGCTGCC
TTGATCTGTATCTTTGCACTCTGGCTTTCCTCTGGAAATTGACGGTAGGT
TGGTATCACTATGCGGACAGCACTTGGCTGAATGTGACATTTATGACTGT
ATTTTCAACGTACTTGGTTGTCCGGAAGTTGCCATCACTGTTTTACGAGA
AATTGGTCCTGGATCCGCGATACAATGTGGATCCTGAAAAGACGCCGCCC
TTGTTGGGTTTGATTTGTGCGCTGGTTTTTGTCGTCGTTTTCCTACAGGT
TGCCGTCATTCCGCTGACTGCGATTTTCATGGCTATTCATATGTTAAGCG
AGTGGTATTTCACACTATTCGTTTGGCTGGGTCTGGTGGGTTTGTCCGTA
CTGGTATTGGCATTTGTTGGACTGTTTGGAGTGCCCTGTTTGGGCAAGAG
TCGCAAAATGAATAGTACCGATATGGATAATAGCCTGAAAGCGGTATTGG
ACGACTTTAATTTTCCCGGCCGGGTCTATATGGTTCACACCTTCCATGTG
GGTCGTCCGACGGCCTGGGTAATGGGATGCTGCTGTTGCCTGCGTTTAGA
TATCCACGATAATCTGAAGTGGAACCGTGGATTTAGCTCCGATGATTTCG
ACTGGGGTCAGATGGGTGCTGGTCTGAATGATGAGCAGTTGGCTGCCTTT
GTGGCCCATCAACTGGCCCATTGGCAACTGTGGCATGTGGCAAAGGGACT
GGCATTGATTTACTTTTATCTCTTGATATATCTACTACTCTTCGGAATCT
GTAACAGGTGGATAACGTTGTATGCGGCCGCGGGCTTTACGACATTCTAT
CCCAGTTCGGTGGGCTTTTGGCTGGTGTACAAGTATCTAATGCCCATCTA
TCATGACATTTCCACTTGGATAGTGTTCTTTTGTATACGTCACTTTGAGT
ACGCCGCCGATGCCTATGTCAATCGCCGAGGTTACGGACTACCGATGAGG
GCCGCTTTGCTCAAACTTTTTTCGGATGATTACGAATTTCCCTATGTAGA
CCAGTGCTACCTCATGTGGCATCGTCTACGGCCATCGGTCCTGCAACGCA
TCGATAATCTGCAGCGTTTGAATATGATCAATGGTGTCTCCACAGCATGA
AAGCTTTCTAGACCAT

BS17917.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-RB 1434 CG7573-PB 1..1434 17..1450 7170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-RB 1523 CG7573-RB 51..1484 17..1450 7170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11312504..11313358 596..1450 4275 100 Plus
3L 28110227 3L 11312125..11312452 272..599 1640 100 Plus
3L 28110227 3L 11311797..11312055 17..275 1295 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:18:43 has no hits.

BS17917.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:32 Download gff for BS17917.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 1..1434 17..1450 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:58:06 Download gff for BS17917.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 51..1489 17..1455 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:56 Download gff for BS17917.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 51..1483 17..1449 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:33 Download gff for BS17917.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 35..1473 17..1455 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:17 Download gff for BS17917.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 51..1483 17..1449 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:17 Download gff for BS17917.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11311797..11312054 17..274 100 -> Plus
3L 11312128..11312451 275..598 100 -> Plus
3L 11312507..11313357 599..1449 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:56 Download gff for BS17917.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11304897..11305154 17..274 100 -> Plus
arm_3L 11305228..11305551 275..598 100 -> Plus
arm_3L 11305607..11306457 599..1449 100   Plus

BS17917.pep Sequence

Translation from 16 to 1449

> BS17917.pep
MNSFALYQDPLRGEVLKISGNQIGMSVVPRKLSFSDPILLRHILCLVIVV
HNSFHLILCCRQLKLCKRTSVPPKQMEGILSQEAFQASKDKQLHASSLEI
FNIAIDTLYSCLDLYLCTLAFLWKLTVGWYHYADSTWLNVTFMTVFSTYL
VVRKLPSLFYEKLVLDPRYNVDPEKTPPLLGLICALVFVVVFLQVAVIPL
TAIFMAIHMLSEWYFTLFVWLGLVGLSVLVLAFVGLFGVPCLGKSRKMNS
TDMDNSLKAVLDDFNFPGRVYMVHTFHVGRPTAWVMGCCCCLRLDIHDNL
KWNRGFSSDDFDWGQMGAGLNDEQLAAFVAHQLAHWQLWHVAKGLALIYF
YLLIYLLLFGICNRWITLYAAAGFTTFYPSSVGFWLVYKYLMPIYHDIST
WIVFFCIRHFEYAADAYVNRRGYGLPMRAALLKLFSDDYEFPYVDQCYLM
WHRLRPSVLQRIDNLQRLNMINGVSTA*

BS17917.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-PB 477 CG7573-PB 1..477 1..477 2564 100 Plus
ste24c-PC 456 CG9002-PC 11..448 36..470 595 30.2 Plus
ste24c-PD 456 CG9002-PD 11..448 36..470 595 30.2 Plus
ste24c-PA 456 CG9002-PA 11..448 36..470 595 30.2 Plus
ste24b-PA 447 CG9001-PA 6..443 34..466 444 26.8 Plus