Clone Sequence Records
BS17917.3prime Sequence
737 bp (736 high quality bases) assembled on 2007-05-30
> BS17917.3prime
ATGGTCTAGAAAGCTTTCATGCTGTGGAGACACCATTGATCATATTCAAA
CGCTGCAGATTATCGATGCGTTGCAGGACCGATGGCCGTAGACGATGCCA
CATGAGGTAGCACTGGTCTACATAGGGAAATTCGTAATCATCCGAAAAAA
GTTTGAGCAAAGCGGCCCTCATCGGTAGTCCGTAACCTCGGCGATTGACA
TAGGCATCGGCGGCGTACTCAAAGTGACGTATACAAAAGAACACTATCCA
AGTGGAAATGTCATGATAGATGGGCATTAGATACTTGTACACCAGCCAAA
AGCCCACCGAACTGGGATAGAATGTCGTAAAGCCCGCGGCCGCATACAAC
GTTATCCACCTGTTACAGATTCCGAAGAGTAGTAGATATATCAAGAGATA
AAAGTAAATCAATGCCAGTCCCTTTGCCACATGCCACAGTTGCCAATGGG
CCAGTTGATGGGCCACAAAGGCAGCCAACTGCTCATCATTCAGACCAGCA
CCCATCTGACCCCAGTCGAAATCATCGGAGCTAAATCCACGGTTCCACTT
CAGATTATCGTGGATATCTAAACGCAGGCAACAGCAGCATCCCATTACCC
AGGCCGTCGGACGACCCACATGGAAGGTGTGAACCATATAGACCCGGCCG
GGAAAATTAAAGTCGTCCAATACCGCTTTCAGGCTATTATCCATATCGGT
ACTATTCATTTTGCGACTCTTGCCCAAACAGGGCACT
BS17917.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-PA | 1530 | CG7573-RA | 810..1530 | 737..17 | 3605 | 100 | Minus |
CG7573-PB | 1434 | CG7573-RB | 714..1434 | 737..17 | 3605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-RB | 1523 | CG7573-RB | 764..1484 | 737..17 | 3605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11312638..11313358 | 737..17 | 3605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:12:18 has no hits.
BS17917.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:17 Download gff for
BS17917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-PB | 714..1434 | 17..737 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:46 Download gff for
BS17917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 764..1489 | 12..737 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:29 Download gff for
BS17917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 764..1489 | 12..737 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:29 Download gff for
BS17917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11312638..11313363 | 12..737 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:46 Download gff for
BS17917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11305738..11306463 | 12..737 | 99 | | Minus |
BS17917.5prime Sequence
814 bp (778 high quality bases) assembled on 2007-05-30
> BS17917.5prime
GAAGTTATCAGTCGACATGAACTCATTCGCACTTTATCAAGATCCTTTGC
GTGGTGAGGTCCTAAAAATATCGGGAAATCAGATCGGCATGAGTGTGGTT
CCCCGGAAACTTAGTTTCTCGGATCCGATTCTTTTGCGGCACATCCTCTG
TCTGGTGATAGTGGTGCACAACAGTTTTCATCTCATCCTCTGTTGCAGGC
AGTTGAAATTGTGCAAAAGGACTTCCGTTCCGCCGAAGCAAATGGAGGGC
ATTTTGTCGCAAGAAGCCTTTCAGGCCTCCAAGGATAAACAGCTTCATGC
CTCATCCCTTGAGATATTCAATATAGCAATAGATACATTATATAGCTGCC
TTGATCTGTATCTTTGCACTCTGGCTTTCCTCTGGAAATTGACGGTAGGT
TGGTATCACTATGCGGACAGCACTTGGCTGAATGTGACATTTATGACTGT
ATTTTCAACGTACTTGGTTGTCCGGAAGTTGCCATCACTGTTTTACGAGA
AATTGGTCCTGGATCCGCGATACAATGTGGATCCTGAAAAGACGCCGCCC
TTGTTGGGTTTGATTTGTGCGCTGGTTTTTGTCGTCGTTTTCCTACAGGT
TGCCGTCATTCCGCTGACTGCGATTTTCATGGCTATTCATATGTTAAGCG
AGTGGTATTTCACACTATTCGTTTGGCTGGGTCTGGTGGGTTTGTCCGTA
CTGGTATTGGCATTTGTTGGACTGTTTGGAGTGCCCTGTTTGGGCAAGAG
TCGCAAAATGAATAGTACCGATATGGATAATACCCTGAAAGCGGTATTGG
ACGACTTTAATTTT
BS17917.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-PB | 1434 | CG7573-RB | 1..798 | 17..814 | 3965 | 99.8 | Plus |
CG7573-PA | 1530 | CG7573-RA | 121..894 | 41..814 | 3845 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-RB | 1523 | CG7573-RB | 51..848 | 17..814 | 3975 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11312125..11312452 | 272..599 | 1640 | 100 | Plus |
3L | 28110227 | 3L | 11311797..11312055 | 17..275 | 1295 | 100 | Plus |
3L | 28110227 | 3L | 11312504..11312722 | 596..814 | 1080 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:15:04 has no hits.
BS17917.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:48:21 Download gff for
BS17917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-PB | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:50 Download gff for
BS17917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 51..848 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:36 Download gff for
BS17917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 51..848 | 17..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:36 Download gff for
BS17917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11311797..11312054 | 17..274 | 100 | -> | Plus |
3L | 11312128..11312451 | 275..598 | 100 | -> | Plus |
3L | 11312507..11312722 | 599..814 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:50 Download gff for
BS17917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11304897..11305154 | 17..274 | 100 | -> | Plus |
arm_3L | 11305228..11305551 | 275..598 | 100 | -> | Plus |
arm_3L | 11305607..11305822 | 599..814 | 99 | | Plus |
BS17917.complete Sequence
1466 bp assembled on 2007-06-21
GenBank Submission: KX805131
> BS17917.complete
GAAGTTATCAGTCGACATGAACTCATTCGCACTTTATCAAGATCCTTTGC
GTGGTGAGGTCCTAAAAATATCGGGAAATCAGATCGGCATGAGTGTGGTT
CCCCGGAAACTTAGTTTCTCGGATCCGATTCTTTTGCGGCACATCCTCTG
TCTGGTGATAGTGGTGCACAACAGTTTTCATCTCATCCTCTGTTGCAGGC
AGTTGAAATTGTGCAAAAGGACTTCCGTTCCGCCGAAGCAAATGGAGGGC
ATTTTGTCGCAAGAAGCCTTTCAGGCCTCCAAGGATAAACAGCTTCATGC
CTCATCCCTTGAGATATTCAATATAGCAATAGATACATTATATAGCTGCC
TTGATCTGTATCTTTGCACTCTGGCTTTCCTCTGGAAATTGACGGTAGGT
TGGTATCACTATGCGGACAGCACTTGGCTGAATGTGACATTTATGACTGT
ATTTTCAACGTACTTGGTTGTCCGGAAGTTGCCATCACTGTTTTACGAGA
AATTGGTCCTGGATCCGCGATACAATGTGGATCCTGAAAAGACGCCGCCC
TTGTTGGGTTTGATTTGTGCGCTGGTTTTTGTCGTCGTTTTCCTACAGGT
TGCCGTCATTCCGCTGACTGCGATTTTCATGGCTATTCATATGTTAAGCG
AGTGGTATTTCACACTATTCGTTTGGCTGGGTCTGGTGGGTTTGTCCGTA
CTGGTATTGGCATTTGTTGGACTGTTTGGAGTGCCCTGTTTGGGCAAGAG
TCGCAAAATGAATAGTACCGATATGGATAATAGCCTGAAAGCGGTATTGG
ACGACTTTAATTTTCCCGGCCGGGTCTATATGGTTCACACCTTCCATGTG
GGTCGTCCGACGGCCTGGGTAATGGGATGCTGCTGTTGCCTGCGTTTAGA
TATCCACGATAATCTGAAGTGGAACCGTGGATTTAGCTCCGATGATTTCG
ACTGGGGTCAGATGGGTGCTGGTCTGAATGATGAGCAGTTGGCTGCCTTT
GTGGCCCATCAACTGGCCCATTGGCAACTGTGGCATGTGGCAAAGGGACT
GGCATTGATTTACTTTTATCTCTTGATATATCTACTACTCTTCGGAATCT
GTAACAGGTGGATAACGTTGTATGCGGCCGCGGGCTTTACGACATTCTAT
CCCAGTTCGGTGGGCTTTTGGCTGGTGTACAAGTATCTAATGCCCATCTA
TCATGACATTTCCACTTGGATAGTGTTCTTTTGTATACGTCACTTTGAGT
ACGCCGCCGATGCCTATGTCAATCGCCGAGGTTACGGACTACCGATGAGG
GCCGCTTTGCTCAAACTTTTTTCGGATGATTACGAATTTCCCTATGTAGA
CCAGTGCTACCTCATGTGGCATCGTCTACGGCCATCGGTCCTGCAACGCA
TCGATAATCTGCAGCGTTTGAATATGATCAATGGTGTCTCCACAGCATGA
AAGCTTTCTAGACCAT
BS17917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-RB | 1434 | CG7573-PB | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-RB | 1523 | CG7573-RB | 51..1484 | 17..1450 | 7170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:18:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11312504..11313358 | 596..1450 | 4275 | 100 | Plus |
3L | 28110227 | 3L | 11312125..11312452 | 272..599 | 1640 | 100 | Plus |
3L | 28110227 | 3L | 11311797..11312055 | 17..275 | 1295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:18:43 has no hits.
BS17917.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:32 Download gff for
BS17917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 1..1434 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:58:06 Download gff for
BS17917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 51..1489 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:56 Download gff for
BS17917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 51..1483 | 17..1449 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:33 Download gff for
BS17917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 35..1473 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:17 Download gff for
BS17917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 51..1483 | 17..1449 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:17 Download gff for
BS17917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11311797..11312054 | 17..274 | 100 | -> | Plus |
3L | 11312128..11312451 | 275..598 | 100 | -> | Plus |
3L | 11312507..11313357 | 599..1449 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:56 Download gff for
BS17917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11304897..11305154 | 17..274 | 100 | -> | Plus |
arm_3L | 11305228..11305551 | 275..598 | 100 | -> | Plus |
arm_3L | 11305607..11306457 | 599..1449 | 100 | | Plus |
BS17917.pep Sequence
Translation from 16 to 1449
> BS17917.pep
MNSFALYQDPLRGEVLKISGNQIGMSVVPRKLSFSDPILLRHILCLVIVV
HNSFHLILCCRQLKLCKRTSVPPKQMEGILSQEAFQASKDKQLHASSLEI
FNIAIDTLYSCLDLYLCTLAFLWKLTVGWYHYADSTWLNVTFMTVFSTYL
VVRKLPSLFYEKLVLDPRYNVDPEKTPPLLGLICALVFVVVFLQVAVIPL
TAIFMAIHMLSEWYFTLFVWLGLVGLSVLVLAFVGLFGVPCLGKSRKMNS
TDMDNSLKAVLDDFNFPGRVYMVHTFHVGRPTAWVMGCCCCLRLDIHDNL
KWNRGFSSDDFDWGQMGAGLNDEQLAAFVAHQLAHWQLWHVAKGLALIYF
YLLIYLLLFGICNRWITLYAAAGFTTFYPSSVGFWLVYKYLMPIYHDIST
WIVFFCIRHFEYAADAYVNRRGYGLPMRAALLKLFSDDYEFPYVDQCYLM
WHRLRPSVLQRIDNLQRLNMINGVSTA*
BS17917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-PB | 477 | CG7573-PB | 1..477 | 1..477 | 2564 | 100 | Plus |
ste24c-PC | 456 | CG9002-PC | 11..448 | 36..470 | 595 | 30.2 | Plus |
ste24c-PD | 456 | CG9002-PD | 11..448 | 36..470 | 595 | 30.2 | Plus |
ste24c-PA | 456 | CG9002-PA | 11..448 | 36..470 | 595 | 30.2 | Plus |
ste24b-PA | 447 | CG9001-PA | 6..443 | 34..466 | 444 | 26.8 | Plus |