Clone Sequence Records
BS17925.3prime Sequence
892 bp (824 high quality bases) assembled on 2007-05-30
> BS17925.3prime
ATGGTCTAGAAAGCTTTCACTCGGTTCGCGGCCGAAGGGCTAAACGCAAA
GTCCGATCGGGCACGGTGACCATGCGGAGTACGCTGTCAACGGGCATCTC
GTTAAGGCAGCTCATCTCAAACTGAGCAGCACATCGGCCCAGCAGGGAGT
GGAGCTGCTTGAGTGCCACACGGCGACCAATGCAAGACCGCTGGCCGATG
GCAAAAGGCAGACTGCCGTGTGACTTATGCACCTGCTCCGTCTCTCCAAT
GCACCAGCGCTCCGGGAGCACACGTTCCGGCTGCTCAAAGTGTGATGGAT
CGCGACCTGCCGTGTACAAGGAGAGCAGCACCATGGTATCCTTTTCGATA
AAGTGACCGCCAAGTTGCGCGTCCTGCGGCAGATATCGGCCAATGAAGGG
AGCTACGGGGTACAGACGCAGGGACTCCTTGATCAGGCCGTGCATCAGGC
GAGAATCATTGGTAGCTCGCTCCTTGGCCAGTCGTTGCTGGAGCCTCGGC
TCCTTTGAAAGGGCAAACAAAGCCCACTGACTGCTGAATGCGGTCGTGTC
ACCTGCTGCAATGACCAAGTCTACAAATATCCGCTTGATCATATCGCCTG
GCACATCCGCCGCCTGGAGGCGATGGTAAAGCGCCTCATCGTGCGGTCTC
CTTTGGTCCTCCTGCACTCTGATGCAGTGATCGATTATGGCAGCTCCCTC
ACGCAGCACCTCATCCACATTGGCCTCGAAATCCCGCCAGATGGGCAGGC
GCAAAATCTGGGCCAAGCGAGGCGGGAATGTCATCAGTCGCGAGCTATGC
TCAACACCTTGTGCACAATCTGCGTGAAGTAGTCTAGCGAGGACTGGATC
TTGGGGCAGGTGAGCACGCTGGTGCCAAACATGATGCAGCAC
BS17925.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14728-PA | 1563 | sad-RA | 776..1563 | 804..17 | 3940 | 100 | Minus |
| CG14728-PA | 1563 | sad-RA | 687..776 | 892..803 | 425 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sad-RA | 1773 | CG14728-RA | 793..1669 | 892..17 | 4345 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11878661..11879009 | 892..545 | 1680 | 99.4 | Minus |
| 3R | 32079331 | 3R | 11879330..11879650 | 337..17 | 1605 | 100 | Minus |
| 3R | 32079331 | 3R | 11879067..11879274 | 545..338 | 1040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:37:41 has no hits.
BS17925.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:49:08 Download gff for
BS17925.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14728-PA | 687..1563 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:19 Download gff for
BS17925.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sad-RA | 793..1676 | 9..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:22 Download gff for
BS17925.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sad-RA | 793..1676 | 9..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:22 Download gff for
BS17925.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11878661..11879009 | 545..892 | 99 | -> | Minus |
| 3R | 11879068..11879274 | 338..544 | 100 | -> | Minus |
| 3R | 11879330..11879657 | 9..337 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:19 Download gff for
BS17925.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7704383..7704731 | 545..892 | 99 | -> | Minus |
| arm_3R | 7704790..7704996 | 338..544 | 100 | -> | Minus |
| arm_3R | 7705052..7705379 | 9..337 | 98 | | Minus |
BS17925.5prime Sequence
814 bp (737 high quality bases) assembled on 2007-05-30
> BS17925.5prime
GAAGTTATCACTCGACATGACCGAGAAGAGGGAGCGGCCGGGCCCGCTGC
GCTGGCTGAGACACCTGCTCGACCAGCTCCTGGTGCGAATCCTTAGCCTG
AGCCTCTTCCGTTCGCGCTGCGATCCGCCGCCTTTGCAGCGTTTTCCCGC
AACGGAACTACCGCCTGCCGTCGCCGCCAAATACGTGCCCATTCCAAGGG
TGAAGGGACTTCCGGTAGTTGGGACACTTGTGGATCTTATAGCCGCCGGC
GGAGCCACGCACCTTCATAAGTACATCGATGCGAGGCACAAGCAGTATGG
TCCCATTTTCCGGGAGCGATTGGGCGGTACCCAGGATGCAGTGTTCGTAT
CGTCCGCAAATCTCATGCGCGGAGTCTTCCAGCACGAGGGTCAGTATCCG
CAGCATCCGCTGCCGGATGCCTGGACGCTGTATAACCAGCAACATGCCTG
CCAACGGGGACTGTTCTTCATGGAGGGCGCCGAGTGGCTGCACAACCGAC
GCATACTTAATCGACTGCTGCTCAACGGAAATTTGAATTGGATGGACGTG
CATATTGAGAGCTGTACCAGACGAATGGTGGATCAGTGGAAAAGACGCAC
TGCGGAGGCGGCGGCGATTCCGCTAGCGGAGAGTGGTGAAATACGAAGCT
ACGAACTGCCCCTGTTGGAACAACAGCTCTACCGTTGGTCCATAGAAGTT
CTGTGCTGCATCATGTTTGGCACCAGCGTGCTCACCTGCCCCCAGATCCA
GTCCTCGCTAGACTACTTCACGCAGATTGTGCACAAGGTGTTTGAGCATA
GCTCGCGACTGATG
BS17925.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14728-PA | 1563 | sad-RA | 1..798 | 17..814 | 3940 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sad-RA | 1773 | CG14728-RA | 107..904 | 17..814 | 3960 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11877341..11877585 | 17..261 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 11878359..11878585 | 472..698 | 1135 | 100 | Plus |
| 3R | 32079331 | 3R | 11878062..11878272 | 262..472 | 1055 | 100 | Plus |
| 3R | 32079331 | 3R | 11878655..11878772 | 697..814 | 560 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:29:46 has no hits.
BS17925.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:49:13 Download gff for
BS17925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14728-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:33 Download gff for
BS17925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sad-RA | 100..904 | 6..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:46 Download gff for
BS17925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sad-RA | 100..904 | 6..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:46 Download gff for
BS17925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11878062..11878271 | 262..471 | 100 | -> | Plus |
| 3R | 11878359..11878585 | 472..698 | 100 | -> | Plus |
| 3R | 11878657..11878772 | 699..814 | 98 | | Plus |
| 3R | 11877334..11877585 | 6..261 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:33 Download gff for
BS17925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7703056..7703307 | 6..261 | 98 | -> | Plus |
| arm_3R | 7703784..7703993 | 262..471 | 100 | -> | Plus |
| arm_3R | 7704081..7704307 | 472..698 | 100 | -> | Plus |
| arm_3R | 7704379..7704494 | 699..814 | 98 | | Plus |
BS17925.complete Sequence
1595 bp assembled on 2009-08-26
GenBank Submission: KX804618
> BS17925.complete
GAAGTTATCAGTCGACATGACCGAGAAGAGGGAGCGGCCGGGCCCGCTGC
GCTGGCTGAGACACCTGCTCGACCAGCTCCTGGTGCGAATCCTTAGCCTG
AGCCTCTTCCGTTCGCGCTGCGATCCGCCGCCTTTGCAGCGTTTTCCCGC
AACGGAACTACCGCCTGCCGTCGCCGCCAAATACGTGCCCATTCCAAGGG
TGAAGGGACTTCCGGTAGTTGGGACACTTGTGGATCTTATAGCCGCCGGC
GGAGCCACGCACCTTCATAAGTACATCGATGCGAGGCACAAGCAGTATGG
TCCCATTTTCCGGGAGCGATTGGGCGGTACCCAGGATGCAGTGTTCGTAT
CGTCCGCAAATCTCATGCGCGGAGTCTTCCAGCACGAGGGTCAGTATCCG
CAGCATCCGCTGCCGGATGCCTGGACGCTGTATAACCAGCAACATGCCTG
CCAACGGGGACTGTTCTTCATGGAGGGCGCCGAGTGGCTGCACAACCGAC
GCATACTTAATCGACTGCTGCTCAACGGAAATTTGAATTGGATGGACGTG
CATATTGAGAGCTGTACCAGACGAATGGTGGATCAGTGGAAAAGACGCAC
TGCGGAGGCGGCGGCGATTCCGCTAGCGGAGAGTGGTGAAATACGAAGCT
ACGAACTGCCCCTGTTGGAACAACAGCTCTACCGTTGGTCCATAGAAGTT
CTGTGCTGCATCATGTTTGGCACCAGCGTGCTCACCTGCCCCAAGATCCA
GTCCTCGCTAGACTACTTCACGCAGATTGTGCACAAGGTGTTTGAGCATA
GCTCGCGACTGATGACATTCCCGCCTCGCTTGGCCCAGATTTTGCGCCTG
CCCATCTGGCGGGATTTCGAGGCCAATGTGGATGAGGTGCTGCGTGAGGG
AGCTGCCATAATCGATCACTGCATCAGAGTGCAGGAGGACCAAAGGAGAC
CGCACGATGAGGCGCTTTACCATCGCCTCCAGGCGGCGGATGTGCCAGGC
GATATGATCAAGCGGATATTTGTAGACTTGGTCATTGCAGCAGGTGACAC
GACCGCATTCAGCAGTCAGTGGGCTTTGTTTGCCCTTTCAAAGGAGCCGA
GGCTCCAGCAACGACTGGCCAAGGAGCGAGCTACCAATGATTCTCGCCTG
ATGCACGGCCTGATCAAGGAGTCCCTGCGTCTGTACCCCGTAGCTCCCTT
CATTGGCCGATATCTGCCGCAGGACGCGCAACTTGGCGGTCACTTTATCG
AAAAGGATACCATGGTGCTGCTCTCCTTGTACACGGCAGGTCGCGATCCA
TCACACTTTGAGCAGCCGGAACGTGTGCTCCCGGAGCGCTGGTGCATTGG
AGAGACGGAGCAGGTGCATAAGTCACACGGCAGTCTGCCTTTTGCCATCG
GCCAGCGGTCTTGCATTGGTCGCCGTGTGGCACTCAAGCAGCTCCACTCC
CTGCTGGGCCGATGTGCTGCTCAGTTTGAGATGAGCTGCCTTAACGAGAT
GCCCGTTGACAGCGTACTCCGCATGGTCACCGTGCCCGATCGGACTTTGC
GTTTAGCCCTTCGGCCGCGAACCGAGTGAAAGCTTTCTAGACCAT
BS17925.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sad-RA | 1563 | CG14728-PA | 1..1563 | 17..1579 | 7800 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sad-RA | 1773 | CG14728-RA | 107..1669 | 17..1579 | 7800 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11878655..11879009 | 697..1051 | 1760 | 99.7 | Plus |
| 3R | 32079331 | 3R | 11879330..11879650 | 1259..1579 | 1605 | 100 | Plus |
| 3R | 32079331 | 3R | 11877341..11877585 | 17..261 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 11878359..11878585 | 472..698 | 1135 | 100 | Plus |
| 3R | 32079331 | 3R | 11878062..11878272 | 262..472 | 1055 | 100 | Plus |
| 3R | 32079331 | 3R | 11879067..11879274 | 1051..1258 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:35:00 has no hits.
BS17925.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:26 Download gff for
BS17925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sad-RA | 107..1668 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:46 Download gff for
BS17925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sad-RA | 107..1668 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:00 Download gff for
BS17925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sad-RA | 107..1668 | 17..1578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:00 Download gff for
BS17925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11877341..11877585 | 17..261 | 100 | -> | Plus |
| 3R | 11878062..11878271 | 262..471 | 100 | -> | Plus |
| 3R | 11878359..11878585 | 472..698 | 100 | -> | Plus |
| 3R | 11878657..11879009 | 699..1051 | 99 | -> | Plus |
| 3R | 11879068..11879274 | 1052..1258 | 100 | -> | Plus |
| 3R | 11879330..11879649 | 1259..1578 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:46 Download gff for
BS17925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7703063..7703307 | 17..261 | 100 | -> | Plus |
| arm_3R | 7703784..7703993 | 262..471 | 100 | -> | Plus |
| arm_3R | 7704081..7704307 | 472..698 | 100 | -> | Plus |
| arm_3R | 7704379..7704731 | 699..1051 | 99 | -> | Plus |
| arm_3R | 7704790..7704996 | 1052..1258 | 100 | -> | Plus |
| arm_3R | 7705052..7705371 | 1259..1578 | 100 | | Plus |
BS17925.pep Sequence
Translation from 16 to 1578
> BS17925.pep
MTEKRERPGPLRWLRHLLDQLLVRILSLSLFRSRCDPPPLQRFPATELPP
AVAAKYVPIPRVKGLPVVGTLVDLIAAGGATHLHKYIDARHKQYGPIFRE
RLGGTQDAVFVSSANLMRGVFQHEGQYPQHPLPDAWTLYNQQHACQRGLF
FMEGAEWLHNRRILNRLLLNGNLNWMDVHIESCTRRMVDQWKRRTAEAAA
IPLAESGEIRSYELPLLEQQLYRWSIEVLCCIMFGTSVLTCPKIQSSLDY
FTQIVHKVFEHSSRLMTFPPRLAQILRLPIWRDFEANVDEVLREGAAIID
HCIRVQEDQRRPHDEALYHRLQAADVPGDMIKRIFVDLVIAAGDTTAFSS
QWALFALSKEPRLQQRLAKERATNDSRLMHGLIKESLRLYPVAPFIGRYL
PQDAQLGGHFIEKDTMVLLSLYTAGRDPSHFEQPERVLPERWCIGETEQV
HKSHGSLPFAIGQRSCIGRRVALKQLHSLLGRCAAQFEMSCLNEMPVDSV
LRMVTVPDRTLRLALRPRTE*
BS17925.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sad-PA | 520 | CG14728-PA | 1..520 | 1..520 | 2741 | 100 | Plus |
| Cyp49a1-PE | 589 | CG18377-PE | 90..560 | 46..490 | 277 | 24.7 | Plus |
| Cyp49a1-PD | 589 | CG18377-PD | 90..560 | 46..490 | 277 | 24.7 | Plus |
| Cyp49a1-PA | 589 | CG18377-PA | 90..560 | 46..490 | 277 | 24.7 | Plus |
| dib-PA | 489 | CG12028-PA | 5..489 | 40..520 | 276 | 24.8 | Plus |
