Clone BS17934 Report

Search the DGRC for BS17934

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:179
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG5043-RA
Protein status:BS17934.pep: full length peptide match
Sequenced Size:1532

Clone Sequence Records

BS17934.complete Sequence

1532 bp assembled on 2009-12-07

GenBank Submission: KX801765

> BS17934.complete
GAAGTTATCAGTCGACATGTTTCCGAAAAGTCCACGAATTCGCCAGGTCA
ACCAGGCTGGTTTGACCAGAATCCCTCAGAAGGGATCGCCCAGAACCCTT
TACTCCAAATCACTTCTTTCTGCACAGGCAAAGAAGCGCCGCATTTTGGG
ACAGCGGAACTTGAAGAAGGATAATGCCTCAGTAGACAAAAACAAGCAAC
AGTTGCAAAAAATACCCGAGACGGGCCTACTCACACCCTCCTCCTCGGAC
AACTCCTTGACCACCACAGGGTCTAGCTCTGGCCAATCTAGCTGTTCGGC
TATGGCAAAGACCAGTTTGCTCCGAGAGCCCACCTCCTTGACCCCCTATT
TGACTCTCAAGCGTCAGCAGACCTCGACATTGATTAATTTTCGGGTGCGC
AAATCGCTTTCTCAAATGGATTTCAAGGAGGCGCGTCGCACGGGAAACTA
TCAGTTGGTGGCCCATGTGGGATCGCCCAGAAAGTCTGTTCAGCAAATGT
CGCAGAAAGTCGATGGCGATTTGGGATTGGAGGCCAATATGGCCAAGTTG
CTGCTTCAGGACAATGCACTAATTGAAGGTGAGATGAGCTTTGTGGTCGG
TCCAGATCAGGATGCCCGAGTGGCCAGCTTGAGAATCTTTAACACCATTA
TGCTACACGCTTGGCGCAGGAGGCGGGAGGAGGTTCGTCAGCTGACCGAT
CAGGTGGAGGACTACAAGAAAAGTTTGGTTAAAAATCGCAACCAATTGCA
TGTCTACAATTCGCTCTTCTCCGTGGAGAAGCGTCGCAATGAAACCTTAA
ATGATCAGCTTAGGCAGTCCTATCGCGAAAATGCTCAGACGAAACTCTCC
TACGAGGAACTAAATGCCGTGCTGGTGCAGATCAGAAACGAAAAGGAGAA
GCTTGCCGAAGAGGTGGCAACCAAGGATCGGGATATTGAGAATCTCCAGG
AAATGCAGCAGCAACTGAAGAGCGAACTCTTTCAGGTGCATGGCCAACAG
GGACAGCAGCTTGAGGAGTTGACCCGGTTGCAGCGCGAGTACCAGGAGAG
CCAAACCGCTCAGGATGAACTGCTCCGCCAACTGAATCTGCTCCGAATCG
AACTGGCCCTTAAGAGTGACTTTGTTGACCAGTTACGCGACAGCTTGGCC
AAAGTGCAGGATCTCAAGCGGGGATCTGATGAGCAGTTCAGCAAATTGCT
TGAACAAACGTTAAAACTAGAGCAAGCGATCGCAGAAAAGGAGGAGCAAC
TGGTTACCCTCCAGAATTGCTTGGCCGCCACCTTGGGCCAAAGGATTCGC
CAATGCTTCGCCCAAAGTCAGGCCTATCAGCATGCCACCTATCGCATGCT
GCACTTTGTAGCCCACTATATGCTACCAGGTACTCCGCCTCCAGGACCTT
CGCTTCCAGGAGCCGTTAACAGGCTGAAGGGCTTTTTTGTACGCGGCTCG
CAAAATGAATTGAACAATGAAGATAGTTTTAAAGATCTTCAGGAGGGCGA
CAAAGGCAAAGATTAGAAGCTTTCTAGACCAT

BS17934.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-RA 1500 CG5043-PA 1..1500 17..1516 7470 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-RA 1758 CG5043-RA 113..1612 17..1516 7470 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17434198..17434744 178..724 2720 99.8 Plus
2L 23513712 2L 17434803..17435269 725..1191 2335 100 Plus
2L 23513712 2L 17435328..17435654 1190..1516 1620 99.7 Plus
2L 23513712 2L 17433974..17434134 17..177 805 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:43:32 has no hits.

BS17934.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:22 Download gff for BS17934.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 1..1500 17..1516 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:02 Download gff for BS17934.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 119..1612 23..1516 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:55 Download gff for BS17934.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 119..1612 23..1516 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:22 Download gff for BS17934.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 108..1612 8..1516 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:22 Download gff for BS17934.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 119..1612 23..1516 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:22 Download gff for BS17934.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17434803..17435269 725..1191 100 -> Plus
2L 17433980..17434134 23..177 100 -> Plus
2L 17434198..17434744 178..724 99 -> Plus
2L 17435330..17435654 1192..1516 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:55 Download gff for BS17934.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17433980..17434134 23..177 100 -> Plus
arm_2L 17434198..17434744 178..724 99 -> Plus
arm_2L 17434803..17435269 725..1191 100 -> Plus
arm_2L 17435330..17435654 1192..1516 99   Plus

BS17934.3prime Sequence

766 bp (695 high quality bases) assembled on 2007-05-30

> BS17934.3prime
ATGGTCTAGAAAGCTTCTAATCTTTGCCTTTGTCGCCCTCCTGAAGATCT
TTAAAACTATCTTCATTGTTCAATTCATTTTGCGAGCCGCGTACAAAAAA
GCCCTTCAGCCTGTTAACGGCTCCTGGAAGCGAAGGTCCTGGAGGCGGAG
TACCTGGTAGCATATAGTGGGCTACAAAGTGCAGCATGCGATAGGTGGCA
TGCTGATAGGCCTGACTTTGGGCGAAGCATTGGCGAATCCTTTGGCCCAA
GGTGGCGGCCAAGCAATTCTGGAGGGTAACCAGTTGCTCCTCCTTTTCTG
CGATCGCTTGCTCTAGTTTTAACGTTTGTTCAAGCAATTTGCTGAACTGC
TCATCAGATCCCCGCTTGAGATCCTGCACTTTGGCCAAGCTGTCGCGTAA
CTGGTCAACAAAGTCACTCTTAAGGGCCAGTTCGATTCGGAGCAGATTCA
GTTGGCGGAGCAGTTCATCCTGAGCGGTTTGGCTCTCCTGGTACTCGCGC
TGCAACCGGGTCAACTCCTCAAGCTGCTGTCCCTGTTGGCCATGCACCTG
AAAGAGTTCGCTCTTCAGTTGCTGCTGCATTTCCTGGAGATTCTCAATAT
CCCGATCCTTGGTTGCCACCTCTTCGGCAAGCTTCTCCTTTTCGTTTCTG
ATCTGCACCAGCACGGCATTTAGTTCCTCGTAGGAGAGTTTCGTCTGAGC
ATTTTCGCGATAGGACTGCCTAAGCTGATCATTTAAGGTTTCATTGCGAC
GCTTCTCCACGGAGAA

BS17934.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-PA 1500 CG5043-RA 751..1500 766..17 3725 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-RA 1758 CG5043-RA 863..1612 766..17 3735 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17434845..17435269 766..342 2125 100 Minus
2L 23513712 2L 17435328..17435654 343..17 1620 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 16:36:47 has no hits.

BS17934.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:50:08 Download gff for BS17934.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5043-PA 753..1500 17..764 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:21 Download gff for BS17934.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 863..1612 17..766 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:08 Download gff for BS17934.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 863..1612 17..766 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:08 Download gff for BS17934.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17434845..17435269 342..766 100 -> Minus
2L 17435330..17435654 17..341 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:21 Download gff for BS17934.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17434845..17435269 342..766 100 -> Minus
arm_2L 17435330..17435654 17..341 99   Minus

BS17934.5prime Sequence

852 bp (776 high quality bases) assembled on 2007-05-30

> BS17934.5prime
GAAGTTATCACTCTACATGTTTCCGAAAAGTCCACGAATTCGCCAGGTCA
ACCAGGCTGGTTTGACCAGAATCCCTCAGAAGGGATCGCCCAGAACCCTT
TACTCCAAATCACTTCTTTCTGCACAGGCAAAGAAGCGCCGCATTTTGGG
ACAGCGGAACTTGAAGAAGGATAATGCCTCAGTAGACAAAAACAAGCAAC
AGTTGCAAAAAATACCCGAGACGGGCCTACTCACACCCTCCTCCTCGGAC
AACTCCTTGACCACCACAGGGTCTAGCTCTGGCCAATCTAGCTGTTCGGC
TATGGCAAAGACCAGTTTGCTCCGAGAGCCCACCTCCTTGACCCCCTATT
TGACTCTCAAGCGTCAGCAGACCTCGACATTGATTAATTTTCGGGTGCGC
AAATCGCTTTCTCAAATGGATTTCAAGGAGGCGCGTCGCACGGGAAACTA
TCAGTTGGTGGCCCATGTGGGATCGCCCAGAAAGTCTGTTCAGCAAATGT
CGCAGAAAGTCGATGGCGATTTGGGATTGGAGGCCAATATGGCCAAGTTG
CTGCTTCAGGACAATGCACTAATTGAAGGTGAGATGAGCTTTGTGGTCGG
TCCAGATCAGGATGCCCGAGTGGCCAGCTTGAGAATCTTTAACACCATTA
TGCTACACGCTTGGCGCAGGAGGCGGGAGGAGGTTCGTCAGCTGACCGAT
CAGGTGGAGGACTACAAGAAAAGTTTGGTTAAAAATCGCAACCAATTGCA
TGTCTACAATTCGCTCTTCTCCGTGGAGAAGCGTCGCAATGAAACCTTAA
ATGATCAGCTTANGCAGTCCTATCGCGAAAATGCTCAGACGAAACTCTCC
TA

BS17934.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-PA 1500 CG5043-RA 1..836 17..852 4136 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-RA 1758 CG5043-RA 113..948 17..852 4154 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17434198..17434744 178..724 2720 99.8 Plus
2L 23513712 2L 17433974..17434134 17..177 805 100 Plus
2L 23513712 2L 17434803..17434930 725..852 629 99.2 Plus
Blast to na_te.dros performed on 2015-02-10 22:36:47 has no hits.

BS17934.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:50:12 Download gff for BS17934.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5043-PA 1..835 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:33 Download gff for BS17934.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 107..947 11..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:33 Download gff for BS17934.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 107..947 11..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:33 Download gff for BS17934.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17433968..17434134 11..177 98 -> Plus
2L 17434198..17434744 178..724 99 -> Plus
2L 17434803..17434929 725..851 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:33 Download gff for BS17934.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17433968..17434134 11..177 98 -> Plus
arm_2L 17434198..17434744 178..724 99 -> Plus
arm_2L 17434803..17434929 725..851 99   Plus

BS17934.pep Sequence

Translation from 16 to 1515

> BS17934.pep
MFPKSPRIRQVNQAGLTRIPQKGSPRTLYSKSLLSAQAKKRRILGQRNLK
KDNASVDKNKQQLQKIPETGLLTPSSSDNSLTTTGSSSGQSSCSAMAKTS
LLREPTSLTPYLTLKRQQTSTLINFRVRKSLSQMDFKEARRTGNYQLVAH
VGSPRKSVQQMSQKVDGDLGLEANMAKLLLQDNALIEGEMSFVVGPDQDA
RVASLRIFNTIMLHAWRRRREEVRQLTDQVEDYKKSLVKNRNQLHVYNSL
FSVEKRRNETLNDQLRQSYRENAQTKLSYEELNAVLVQIRNEKEKLAEEV
ATKDRDIENLQEMQQQLKSELFQVHGQQGQQLEELTRLQREYQESQTAQD
ELLRQLNLLRIELALKSDFVDQLRDSLAKVQDLKRGSDEQFSKLLEQTLK
LEQAIAEKEEQLVTLQNCLAATLGQRIRQCFAQSQAYQHATYRMLHFVAH
YMLPGTPPPGPSLPGAVNRLKGFFVRGSQNELNNEDSFKDLQEGDKGKD*

BS17934.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-PA 499 CG5043-PA 1..499 1..499 2499 100 Plus
CG5050-PB 327 CG5050-PB 33..193 198..358 236 31.1 Plus
CG5050-PA 327 CG5050-PA 33..193 198..358 236 31.1 Plus
CG12693-PB 425 CG12693-PB 124..384 187..430 210 24.5 Plus