Clone Sequence Records
BS17934.complete Sequence
1532 bp assembled on 2009-12-07
GenBank Submission: KX801765
> BS17934.complete
GAAGTTATCAGTCGACATGTTTCCGAAAAGTCCACGAATTCGCCAGGTCA
ACCAGGCTGGTTTGACCAGAATCCCTCAGAAGGGATCGCCCAGAACCCTT
TACTCCAAATCACTTCTTTCTGCACAGGCAAAGAAGCGCCGCATTTTGGG
ACAGCGGAACTTGAAGAAGGATAATGCCTCAGTAGACAAAAACAAGCAAC
AGTTGCAAAAAATACCCGAGACGGGCCTACTCACACCCTCCTCCTCGGAC
AACTCCTTGACCACCACAGGGTCTAGCTCTGGCCAATCTAGCTGTTCGGC
TATGGCAAAGACCAGTTTGCTCCGAGAGCCCACCTCCTTGACCCCCTATT
TGACTCTCAAGCGTCAGCAGACCTCGACATTGATTAATTTTCGGGTGCGC
AAATCGCTTTCTCAAATGGATTTCAAGGAGGCGCGTCGCACGGGAAACTA
TCAGTTGGTGGCCCATGTGGGATCGCCCAGAAAGTCTGTTCAGCAAATGT
CGCAGAAAGTCGATGGCGATTTGGGATTGGAGGCCAATATGGCCAAGTTG
CTGCTTCAGGACAATGCACTAATTGAAGGTGAGATGAGCTTTGTGGTCGG
TCCAGATCAGGATGCCCGAGTGGCCAGCTTGAGAATCTTTAACACCATTA
TGCTACACGCTTGGCGCAGGAGGCGGGAGGAGGTTCGTCAGCTGACCGAT
CAGGTGGAGGACTACAAGAAAAGTTTGGTTAAAAATCGCAACCAATTGCA
TGTCTACAATTCGCTCTTCTCCGTGGAGAAGCGTCGCAATGAAACCTTAA
ATGATCAGCTTAGGCAGTCCTATCGCGAAAATGCTCAGACGAAACTCTCC
TACGAGGAACTAAATGCCGTGCTGGTGCAGATCAGAAACGAAAAGGAGAA
GCTTGCCGAAGAGGTGGCAACCAAGGATCGGGATATTGAGAATCTCCAGG
AAATGCAGCAGCAACTGAAGAGCGAACTCTTTCAGGTGCATGGCCAACAG
GGACAGCAGCTTGAGGAGTTGACCCGGTTGCAGCGCGAGTACCAGGAGAG
CCAAACCGCTCAGGATGAACTGCTCCGCCAACTGAATCTGCTCCGAATCG
AACTGGCCCTTAAGAGTGACTTTGTTGACCAGTTACGCGACAGCTTGGCC
AAAGTGCAGGATCTCAAGCGGGGATCTGATGAGCAGTTCAGCAAATTGCT
TGAACAAACGTTAAAACTAGAGCAAGCGATCGCAGAAAAGGAGGAGCAAC
TGGTTACCCTCCAGAATTGCTTGGCCGCCACCTTGGGCCAAAGGATTCGC
CAATGCTTCGCCCAAAGTCAGGCCTATCAGCATGCCACCTATCGCATGCT
GCACTTTGTAGCCCACTATATGCTACCAGGTACTCCGCCTCCAGGACCTT
CGCTTCCAGGAGCCGTTAACAGGCTGAAGGGCTTTTTTGTACGCGGCTCG
CAAAATGAATTGAACAATGAAGATAGTTTTAAAGATCTTCAGGAGGGCGA
CAAAGGCAAAGATTAGAAGCTTTCTAGACCAT
BS17934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-RA | 1500 | CG5043-PA | 1..1500 | 17..1516 | 7470 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-RA | 1758 | CG5043-RA | 113..1612 | 17..1516 | 7470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17434198..17434744 | 178..724 | 2720 | 99.8 | Plus |
2L | 23513712 | 2L | 17434803..17435269 | 725..1191 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 17435328..17435654 | 1190..1516 | 1620 | 99.7 | Plus |
2L | 23513712 | 2L | 17433974..17434134 | 17..177 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:43:32 has no hits.
BS17934.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:22 Download gff for
BS17934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 1..1500 | 17..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:02 Download gff for
BS17934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 119..1612 | 23..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:55 Download gff for
BS17934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 119..1612 | 23..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:22 Download gff for
BS17934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 108..1612 | 8..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:22 Download gff for
BS17934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 119..1612 | 23..1516 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:22 Download gff for
BS17934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17434803..17435269 | 725..1191 | 100 | -> | Plus |
2L | 17433980..17434134 | 23..177 | 100 | -> | Plus |
2L | 17434198..17434744 | 178..724 | 99 | -> | Plus |
2L | 17435330..17435654 | 1192..1516 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:55 Download gff for
BS17934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17433980..17434134 | 23..177 | 100 | -> | Plus |
arm_2L | 17434198..17434744 | 178..724 | 99 | -> | Plus |
arm_2L | 17434803..17435269 | 725..1191 | 100 | -> | Plus |
arm_2L | 17435330..17435654 | 1192..1516 | 99 | | Plus |
BS17934.3prime Sequence
766 bp (695 high quality bases) assembled on 2007-05-30
> BS17934.3prime
ATGGTCTAGAAAGCTTCTAATCTTTGCCTTTGTCGCCCTCCTGAAGATCT
TTAAAACTATCTTCATTGTTCAATTCATTTTGCGAGCCGCGTACAAAAAA
GCCCTTCAGCCTGTTAACGGCTCCTGGAAGCGAAGGTCCTGGAGGCGGAG
TACCTGGTAGCATATAGTGGGCTACAAAGTGCAGCATGCGATAGGTGGCA
TGCTGATAGGCCTGACTTTGGGCGAAGCATTGGCGAATCCTTTGGCCCAA
GGTGGCGGCCAAGCAATTCTGGAGGGTAACCAGTTGCTCCTCCTTTTCTG
CGATCGCTTGCTCTAGTTTTAACGTTTGTTCAAGCAATTTGCTGAACTGC
TCATCAGATCCCCGCTTGAGATCCTGCACTTTGGCCAAGCTGTCGCGTAA
CTGGTCAACAAAGTCACTCTTAAGGGCCAGTTCGATTCGGAGCAGATTCA
GTTGGCGGAGCAGTTCATCCTGAGCGGTTTGGCTCTCCTGGTACTCGCGC
TGCAACCGGGTCAACTCCTCAAGCTGCTGTCCCTGTTGGCCATGCACCTG
AAAGAGTTCGCTCTTCAGTTGCTGCTGCATTTCCTGGAGATTCTCAATAT
CCCGATCCTTGGTTGCCACCTCTTCGGCAAGCTTCTCCTTTTCGTTTCTG
ATCTGCACCAGCACGGCATTTAGTTCCTCGTAGGAGAGTTTCGTCTGAGC
ATTTTCGCGATAGGACTGCCTAAGCTGATCATTTAAGGTTTCATTGCGAC
GCTTCTCCACGGAGAA
BS17934.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-PA | 1500 | CG5043-RA | 751..1500 | 766..17 | 3725 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-RA | 1758 | CG5043-RA | 863..1612 | 766..17 | 3735 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17434845..17435269 | 766..342 | 2125 | 100 | Minus |
2L | 23513712 | 2L | 17435328..17435654 | 343..17 | 1620 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:36:47 has no hits.
BS17934.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:50:08 Download gff for
BS17934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-PA | 753..1500 | 17..764 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:21 Download gff for
BS17934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 863..1612 | 17..766 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:08 Download gff for
BS17934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 863..1612 | 17..766 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:08 Download gff for
BS17934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17434845..17435269 | 342..766 | 100 | -> | Minus |
2L | 17435330..17435654 | 17..341 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:21 Download gff for
BS17934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17434845..17435269 | 342..766 | 100 | -> | Minus |
arm_2L | 17435330..17435654 | 17..341 | 99 | | Minus |
BS17934.5prime Sequence
852 bp (776 high quality bases) assembled on 2007-05-30
> BS17934.5prime
GAAGTTATCACTCTACATGTTTCCGAAAAGTCCACGAATTCGCCAGGTCA
ACCAGGCTGGTTTGACCAGAATCCCTCAGAAGGGATCGCCCAGAACCCTT
TACTCCAAATCACTTCTTTCTGCACAGGCAAAGAAGCGCCGCATTTTGGG
ACAGCGGAACTTGAAGAAGGATAATGCCTCAGTAGACAAAAACAAGCAAC
AGTTGCAAAAAATACCCGAGACGGGCCTACTCACACCCTCCTCCTCGGAC
AACTCCTTGACCACCACAGGGTCTAGCTCTGGCCAATCTAGCTGTTCGGC
TATGGCAAAGACCAGTTTGCTCCGAGAGCCCACCTCCTTGACCCCCTATT
TGACTCTCAAGCGTCAGCAGACCTCGACATTGATTAATTTTCGGGTGCGC
AAATCGCTTTCTCAAATGGATTTCAAGGAGGCGCGTCGCACGGGAAACTA
TCAGTTGGTGGCCCATGTGGGATCGCCCAGAAAGTCTGTTCAGCAAATGT
CGCAGAAAGTCGATGGCGATTTGGGATTGGAGGCCAATATGGCCAAGTTG
CTGCTTCAGGACAATGCACTAATTGAAGGTGAGATGAGCTTTGTGGTCGG
TCCAGATCAGGATGCCCGAGTGGCCAGCTTGAGAATCTTTAACACCATTA
TGCTACACGCTTGGCGCAGGAGGCGGGAGGAGGTTCGTCAGCTGACCGAT
CAGGTGGAGGACTACAAGAAAAGTTTGGTTAAAAATCGCAACCAATTGCA
TGTCTACAATTCGCTCTTCTCCGTGGAGAAGCGTCGCAATGAAACCTTAA
ATGATCAGCTTANGCAGTCCTATCGCGAAAATGCTCAGACGAAACTCTCC
TA
BS17934.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-PA | 1500 | CG5043-RA | 1..836 | 17..852 | 4136 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-RA | 1758 | CG5043-RA | 113..948 | 17..852 | 4154 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17434198..17434744 | 178..724 | 2720 | 99.8 | Plus |
2L | 23513712 | 2L | 17433974..17434134 | 17..177 | 805 | 100 | Plus |
2L | 23513712 | 2L | 17434803..17434930 | 725..852 | 629 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:36:47 has no hits.
BS17934.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:50:12 Download gff for
BS17934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:33 Download gff for
BS17934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 107..947 | 11..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:33 Download gff for
BS17934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 107..947 | 11..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:33 Download gff for
BS17934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17433968..17434134 | 11..177 | 98 | -> | Plus |
2L | 17434198..17434744 | 178..724 | 99 | -> | Plus |
2L | 17434803..17434929 | 725..851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:33 Download gff for
BS17934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17433968..17434134 | 11..177 | 98 | -> | Plus |
arm_2L | 17434198..17434744 | 178..724 | 99 | -> | Plus |
arm_2L | 17434803..17434929 | 725..851 | 99 | | Plus |
BS17934.pep Sequence
Translation from 16 to 1515
> BS17934.pep
MFPKSPRIRQVNQAGLTRIPQKGSPRTLYSKSLLSAQAKKRRILGQRNLK
KDNASVDKNKQQLQKIPETGLLTPSSSDNSLTTTGSSSGQSSCSAMAKTS
LLREPTSLTPYLTLKRQQTSTLINFRVRKSLSQMDFKEARRTGNYQLVAH
VGSPRKSVQQMSQKVDGDLGLEANMAKLLLQDNALIEGEMSFVVGPDQDA
RVASLRIFNTIMLHAWRRRREEVRQLTDQVEDYKKSLVKNRNQLHVYNSL
FSVEKRRNETLNDQLRQSYRENAQTKLSYEELNAVLVQIRNEKEKLAEEV
ATKDRDIENLQEMQQQLKSELFQVHGQQGQQLEELTRLQREYQESQTAQD
ELLRQLNLLRIELALKSDFVDQLRDSLAKVQDLKRGSDEQFSKLLEQTLK
LEQAIAEKEEQLVTLQNCLAATLGQRIRQCFAQSQAYQHATYRMLHFVAH
YMLPGTPPPGPSLPGAVNRLKGFFVRGSQNELNNEDSFKDLQEGDKGKD*
BS17934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-PA | 499 | CG5043-PA | 1..499 | 1..499 | 2499 | 100 | Plus |
CG5050-PB | 327 | CG5050-PB | 33..193 | 198..358 | 236 | 31.1 | Plus |
CG5050-PA | 327 | CG5050-PA | 33..193 | 198..358 | 236 | 31.1 | Plus |
CG12693-PB | 425 | CG12693-PB | 124..384 | 187..430 | 210 | 24.5 | Plus |