Clone BS17942 Report

Search the DGRC for BS17942

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:179
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG9864-RA
Protein status:BS17942.pep: full length peptide match
Sequenced Size:1430

Clone Sequence Records

BS17942.complete Sequence

1430 bp assembled on 2009-12-07

GenBank Submission: KX801372

> BS17942.complete
GAAGTTATCAGTCGACATGGCCTTCATGCCGTGCTTCTATGTGCCCAAGC
GGATTAACCTGGCGATCATGCTCTTCATGGCCTGCCTCCTCAGCTACATG
ATGCGAGTGAATCTCTCGATCAACATCATCGCCATGGTGGAGGACACGAG
CAGCCACGAGAATGGAACGGAGGTGGAGGCACTGCCCGATTATGGACCGC
GCTACAACTGGACGCAATCGGATCAGGCTCTGCTGCTGGGTGCCTATTTC
TATGGCTATATGATCACCTCACTGCCCGCCGGCACTTTGGCCGAGATGCT
GGGAGCCAGAAATGTGGCAGGTTACAGTTGCCTGGTGGCCGGCATCCTGA
CAGCTCTAACTCCGGCGGCAGCTGCCTGGGACAAATATGCGGTGTTTGCC
GTGCGTTTCTTGATCGGCTTCCTCAACGGTGTCGTGTATCCGTGTTGCCA
CAGCCTTGTTTCCAAGTGGTCGCCTCCGGATGAGAAGGGCAAGTTTGTGG
CCTCGCTGATGGGTGGCACTTTTGGCACCGTCATCACATGGCCCATTAGC
GGTGTGATCATCGAGAATCTGGGCTGGGATTGGGCCTTCTACATTGTGGG
CATATTCGTGCTGGTGGTGGTCGCTATATGGTTCTACCTTGTGGCAGATA
CTCCTGCCCAGCACAGTACGATCAGTCTGAAGGAGCGGGAGTATATCGAA
AGCAGCTTGGGCGACACTCTGAGCAACAAGAAGAAGTGGCCACCATACAA
GGAGCTCGTCCTGTCGCTGCCCTTCTGGTCGCTCATGATGCTCCACTACG
GCAGCATGTGGGGTCTGTTCTTCCTGATTACCGCCACGCCCAAGTTCTTG
AGCGAGGTCCTGGGCTTCAATCTCTCGTCCGCTGGCTTCCTGTCCAGCCT
GCCACATGTGGCACGTCTGCTCTGCGCCTTCGGTTTTGGCGCCGTGGCGG
ATTGGATACGTCGACGTGGCTGGTTGTCGGTGACCCGCATGCGCAAGGCC
TTCTGCCTGCCCTCTCACATCTTGCCCGGCGTCATGCTGATCATCCTGGC
CTACTTTGGTCGCGATCCCTATGTGTGCGTTGCCATTATGACCATTTCGC
TGGGCTTCAACGGAGCTGCCACCGCCTCCAATTTGGCCAACTCACAGGAT
CTGGCGCCCAACTATGCGGGCACGCTGTACGGCATCATTAACTGTGTTGG
CACCACGCCCGGAATCTTTTCGCCTCTGATTGTGGCCGCCTTTACAAAGA
ACGAGAACACAATCGATCAGTGGCACTGGGTGTTTATCATTGGAGCCGCT
GCCTACATATTGCCTGCGCTGTTTTTCTGGGTCTTCGGATCGGGTAAAAT
CCAGAAGTGGAACGAGGTTCAGACCACCGAGTCGCGAGAGGATATTGTCA
ACACAAAGTTGTAGAAGCTTTCTAGACCAT

BS17942.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-RB 1398 CG9864-PB 1..1398 17..1414 6990 100 Plus
CG9864-RA 1398 CG9864-PA 1..1398 17..1414 6990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-RB 1673 CG9864-RB 158..1559 13..1414 6995 99.9 Plus
CG9864-RA 1638 CG9864-RA 123..1524 13..1414 6995 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20249114..20249656 733..191 2715 100 Minus
2R 25286936 2R 20248774..20249055 1013..732 1410 100 Minus
2R 25286936 2R 20248468..20248709 1255..1014 1210 100 Minus
2R 25286936 2R 20248244..20248404 1414..1254 805 100 Minus
2R 25286936 2R 20249747..20249901 190..36 775 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:47:08 has no hits.

BS17942.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:34 Download gff for BS17942.complete
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 1..1398 17..1414 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:36 Download gff for BS17942.complete
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 101..1498 17..1414 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:40 Download gff for BS17942.complete
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 127..1524 17..1414 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:34 Download gff for BS17942.complete
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 97..1501 13..1421 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:43 Download gff for BS17942.complete
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 127..1524 17..1414 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:43 Download gff for BS17942.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20248244..20248402 1256..1414 100 <- Minus
2R 20248468..20248709 1014..1255 100 <- Minus
2R 20248774..20249053 734..1013 100 <- Minus
2R 20249114..20249656 191..733 100 <- Minus
2R 20249747..20249901 36..190 100 <- Minus
2R 20250208..20250226 17..35 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:40 Download gff for BS17942.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16135749..16135907 1256..1414 100 <- Minus
arm_2R 16135973..16136214 1014..1255 100 <- Minus
arm_2R 16136279..16136558 734..1013 100 <- Minus
arm_2R 16136619..16137161 191..733 100 <- Minus
arm_2R 16137252..16137406 36..190 100 <- Minus
arm_2R 16137713..16137731 17..35 100   Minus

BS17942.3prime Sequence

766 bp (708 high quality bases) assembled on 2007-05-30

> BS17942.3prime
ATGGTCTAGAAAGCTTCTACAACTTTGTGTTGACAATATCCTCTCGCGAC
TCGGTGGTCTGAACCTCGTTCCACTTCTGGATTTTACCCGATCCGAAGAC
CCAGAAAAACAGCGCAGGCAATATGTAGGCAGCGGCTCCAATGATAAACA
CCCAGTGCCACTGATCGATTGTGTTCTCGTTCTTTGTAAAGGCGGCCACA
ATCAGAGGCGAAAAGATTCCGGGCGTGGTGCCAACACAGTTAATGATGCC
GTACAGCGTGCCCGCATAGTTGGGCGCCAGATCCTGTGAGTTGGCCAAAT
TGGAGGCGGTGGCAGCTCCGTTGAAGCCCAGCGAAATGGTCATAATGGCA
ACGCACACATAGGGATCGCGACCAAAGTAGGCCAGGATGATCAGCATGAC
GCCGGGCAAGATGTGAGAGGGCAGGCAGAAGGCCTTGCGCATGCGGGTCA
CCGACAACCAGCCACGTCGACGTATCCAATCCGCCACGGCGCCAAAACCG
AAGGCGCAGAGCAGACGTGCCACATGTGGCAGGCTGGACAGGAAGCCAGC
GGACGAGAGATTGAAGCCCAGGACCTCGCTCAAGAACTTGGGCGTGGCGG
TAATCAGGAAGAACAGACCCCACATGCTGCCGTAGTGGAGCATCATGAGC
GACCAGAAGGGCAGCGACAGGACGAGCTCCTTGTATGGTGGCCACTTCTT
CTTGTTGCTCAGAGTGTCGCCCAAGCTGCTTTCGATATACTCCCGCTCCT
TCAAACTGATCGTACT

BS17942.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-PA 1398 CG9864-RA 649..1398 766..17 3725 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-RB 1673 CG9864-RB 810..1559 766..17 3735 99.9 Minus
CG9864-RA 1638 CG9864-RA 775..1524 766..17 3735 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20248774..20249055 418..699 1410 100 Plus
2R 25286936 2R 20248468..20248709 176..417 1210 100 Plus
2R 25286936 2R 20248244..20248404 17..177 805 100 Plus
2R 25286936 2R 20249114..20249182 698..766 330 98.6 Plus
Blast to na_te.dros performed on 2015-02-12 16:37:10 has no hits.

BS17942.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:51:09 Download gff for BS17942.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9864-PA 649..1398 17..766 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:28 Download gff for BS17942.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 775..1527 10..766 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:17 Download gff for BS17942.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 775..1527 10..766 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:17 Download gff for BS17942.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20248241..20248402 10..175 97 <- Plus
2R 20248468..20248709 176..417 100 <- Plus
2R 20248774..20249053 418..697 100 <- Plus
2R 20249114..20249182 698..766 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:28 Download gff for BS17942.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16135746..16135907 10..175 97 <- Plus
arm_2R 16135973..16136214 176..417 100 <- Plus
arm_2R 16136279..16136558 418..697 100 <- Plus
arm_2R 16136619..16136687 698..766 98   Plus

BS17942.5prime Sequence

922 bp (819 high quality bases) assembled on 2007-05-30

> BS17942.5prime
GAAGTTATCAGTCGACATGGCCTTCATGCCGTGCTTCTATGTGCCCAAGC
GGATTAACCTGGCGATCATGCTCTTCATGGCCTGCCTCCTCAGCTACATG
ATGCGAGTGAATCTCTCGATCAACATCATCGCCATGGTGGAGGACACGAG
CAGCCACGAGAATGGAACGGAGGTGGAGGCACTGCCCGATTATGGACCGC
GCTACAACTGGACGCAATCGGATCAGGCTCTGCTGCTGGGTGCCTATTTC
TATGGCTATATGATCACCTCACTGCCCGCCGGCACTTTGGCCGAGATGCT
GGGAGCCAGAAATGTGGCAGGTTACAGTTGCCTGGTGGCCGGCATCCTGA
CAGCTCTAACTCCGGCGGCAGCTGCCTGGGACAAATATGCGGTGTTTGCC
GTGCGTTTCTTGATCGGCTTCCTCAACGGTGTCGTGTATCCGTGTTGCCA
CAGCCTTGTTTCCAAGTGGTCGCCTCCGGATGAGAAGGGCAAGTTTGTGG
CCTCGCTGATGGGTGGCACTTTTGGCACCGTCATCACATGGCCCATTAGC
GGTGTGATCATCGAGAATCTGGGCTGGGATTGGGCCTTCTACATTGTGGG
CATATTCGTGCTGGTGGTGGTCGCTATATGGTTCTACCTTGTGGCAGATA
CTCCTGCCCAGCACAGTACGATCAGTCTGAAGGAGCGGGAGTATATCGAA
AGCAGCTTGGGCGACACTCTGAGCAACAAGAAGAAGTGGCCACCATACAA
NGAGCTCGTCCTGTCGCTGCCCTTCTGGTCGCTCATGATGCTCCACTACG
GCAGCATGTGGGGTCTGTTCTTCCCTGATACCGCCACGCCCAAGTCTTGA
GCGAGGTCCTGGGCTTCAATCTCTCGTCCGCTGGCTTCCTGTCCAGCCTG
CCACATGTGGCACGTCTGCTCT

BS17942.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-PA 1398 CG9864-RA 1..808 17..824 4021 99.8 Plus
CG9864-PA 1398 CG9864-RA 830..907 845..922 390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-RB 1673 CG9864-RB 158..1068 13..922 4459 99.5 Plus
CG9864-RA 1638 CG9864-RA 123..1033 13..922 4459 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20249114..20249656 733..191 2715 100 Minus
2R 25286936 2R 20248864..20249055 922..732 839 96.9 Minus
2R 25286936 2R 20249747..20249901 190..36 775 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:36:57 has no hits.

BS17942.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:51:14 Download gff for BS17942.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9864-PA 1..907 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:36 Download gff for BS17942.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 123..1033 13..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:53 Download gff for BS17942.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 123..1033 13..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:53 Download gff for BS17942.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20248864..20249053 734..922 97 <- Minus
2R 20249114..20249656 191..733 100 <- Minus
2R 20249747..20249901 36..190 100 <- Minus
2R 20250208..20250230 13..35 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:36 Download gff for BS17942.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16136369..16136558 734..922 97 <- Minus
arm_2R 16136619..16137161 191..733 100 <- Minus
arm_2R 16137252..16137406 36..190 100 <- Minus
arm_2R 16137713..16137735 13..35 95   Minus

BS17942.pep Sequence

Translation from 16 to 1413

> BS17942.pep
MAFMPCFYVPKRINLAIMLFMACLLSYMMRVNLSINIIAMVEDTSSHENG
TEVEALPDYGPRYNWTQSDQALLLGAYFYGYMITSLPAGTLAEMLGARNV
AGYSCLVAGILTALTPAAAAWDKYAVFAVRFLIGFLNGVVYPCCHSLVSK
WSPPDEKGKFVASLMGGTFGTVITWPISGVIIENLGWDWAFYIVGIFVLV
VVAIWFYLVADTPAQHSTISLKEREYIESSLGDTLSNKKKWPPYKELVLS
LPFWSLMMLHYGSMWGLFFLITATPKFLSEVLGFNLSSAGFLSSLPHVAR
LLCAFGFGAVADWIRRRGWLSVTRMRKAFCLPSHILPGVMLIILAYFGRD
PYVCVAIMTISLGFNGAATASNLANSQDLAPNYAGTLYGIINCVGTTPGI
FSPLIVAAFTKNENTIDQWHWVFIIGAAAYILPALFFWVFGSGKIQKWNE
VQTTESREDIVNTKL*

BS17942.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-PB 465 CG9864-PB 1..465 1..465 2463 100 Plus
CG9864-PA 465 CG9864-PA 1..465 1..465 2463 100 Plus
CG3036-PB 493 CG3036-PB 15..470 3..449 778 36.2 Plus
CG3036-PA 493 CG3036-PA 15..470 3..449 778 36.2 Plus
NaPi-T-PB 524 CG10207-PB 4..469 9..449 750 32.4 Plus