Clone Sequence Records
BS17942.complete Sequence
1430 bp assembled on 2009-12-07
GenBank Submission: KX801372
> BS17942.complete
GAAGTTATCAGTCGACATGGCCTTCATGCCGTGCTTCTATGTGCCCAAGC
GGATTAACCTGGCGATCATGCTCTTCATGGCCTGCCTCCTCAGCTACATG
ATGCGAGTGAATCTCTCGATCAACATCATCGCCATGGTGGAGGACACGAG
CAGCCACGAGAATGGAACGGAGGTGGAGGCACTGCCCGATTATGGACCGC
GCTACAACTGGACGCAATCGGATCAGGCTCTGCTGCTGGGTGCCTATTTC
TATGGCTATATGATCACCTCACTGCCCGCCGGCACTTTGGCCGAGATGCT
GGGAGCCAGAAATGTGGCAGGTTACAGTTGCCTGGTGGCCGGCATCCTGA
CAGCTCTAACTCCGGCGGCAGCTGCCTGGGACAAATATGCGGTGTTTGCC
GTGCGTTTCTTGATCGGCTTCCTCAACGGTGTCGTGTATCCGTGTTGCCA
CAGCCTTGTTTCCAAGTGGTCGCCTCCGGATGAGAAGGGCAAGTTTGTGG
CCTCGCTGATGGGTGGCACTTTTGGCACCGTCATCACATGGCCCATTAGC
GGTGTGATCATCGAGAATCTGGGCTGGGATTGGGCCTTCTACATTGTGGG
CATATTCGTGCTGGTGGTGGTCGCTATATGGTTCTACCTTGTGGCAGATA
CTCCTGCCCAGCACAGTACGATCAGTCTGAAGGAGCGGGAGTATATCGAA
AGCAGCTTGGGCGACACTCTGAGCAACAAGAAGAAGTGGCCACCATACAA
GGAGCTCGTCCTGTCGCTGCCCTTCTGGTCGCTCATGATGCTCCACTACG
GCAGCATGTGGGGTCTGTTCTTCCTGATTACCGCCACGCCCAAGTTCTTG
AGCGAGGTCCTGGGCTTCAATCTCTCGTCCGCTGGCTTCCTGTCCAGCCT
GCCACATGTGGCACGTCTGCTCTGCGCCTTCGGTTTTGGCGCCGTGGCGG
ATTGGATACGTCGACGTGGCTGGTTGTCGGTGACCCGCATGCGCAAGGCC
TTCTGCCTGCCCTCTCACATCTTGCCCGGCGTCATGCTGATCATCCTGGC
CTACTTTGGTCGCGATCCCTATGTGTGCGTTGCCATTATGACCATTTCGC
TGGGCTTCAACGGAGCTGCCACCGCCTCCAATTTGGCCAACTCACAGGAT
CTGGCGCCCAACTATGCGGGCACGCTGTACGGCATCATTAACTGTGTTGG
CACCACGCCCGGAATCTTTTCGCCTCTGATTGTGGCCGCCTTTACAAAGA
ACGAGAACACAATCGATCAGTGGCACTGGGTGTTTATCATTGGAGCCGCT
GCCTACATATTGCCTGCGCTGTTTTTCTGGGTCTTCGGATCGGGTAAAAT
CCAGAAGTGGAACGAGGTTCAGACCACCGAGTCGCGAGAGGATATTGTCA
ACACAAAGTTGTAGAAGCTTTCTAGACCAT
BS17942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-RB | 1398 | CG9864-PB | 1..1398 | 17..1414 | 6990 | 100 | Plus |
CG9864-RA | 1398 | CG9864-PA | 1..1398 | 17..1414 | 6990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-RB | 1673 | CG9864-RB | 158..1559 | 13..1414 | 6995 | 99.9 | Plus |
CG9864-RA | 1638 | CG9864-RA | 123..1524 | 13..1414 | 6995 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20249114..20249656 | 733..191 | 2715 | 100 | Minus |
2R | 25286936 | 2R | 20248774..20249055 | 1013..732 | 1410 | 100 | Minus |
2R | 25286936 | 2R | 20248468..20248709 | 1255..1014 | 1210 | 100 | Minus |
2R | 25286936 | 2R | 20248244..20248404 | 1414..1254 | 805 | 100 | Minus |
2R | 25286936 | 2R | 20249747..20249901 | 190..36 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:47:08 has no hits.
BS17942.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:34 Download gff for
BS17942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 1..1398 | 17..1414 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:36 Download gff for
BS17942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 101..1498 | 17..1414 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:40 Download gff for
BS17942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 127..1524 | 17..1414 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:34 Download gff for
BS17942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 97..1501 | 13..1421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:43 Download gff for
BS17942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 127..1524 | 17..1414 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:43 Download gff for
BS17942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20248244..20248402 | 1256..1414 | 100 | <- | Minus |
2R | 20248468..20248709 | 1014..1255 | 100 | <- | Minus |
2R | 20248774..20249053 | 734..1013 | 100 | <- | Minus |
2R | 20249114..20249656 | 191..733 | 100 | <- | Minus |
2R | 20249747..20249901 | 36..190 | 100 | <- | Minus |
2R | 20250208..20250226 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:40 Download gff for
BS17942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16135749..16135907 | 1256..1414 | 100 | <- | Minus |
arm_2R | 16135973..16136214 | 1014..1255 | 100 | <- | Minus |
arm_2R | 16136279..16136558 | 734..1013 | 100 | <- | Minus |
arm_2R | 16136619..16137161 | 191..733 | 100 | <- | Minus |
arm_2R | 16137252..16137406 | 36..190 | 100 | <- | Minus |
arm_2R | 16137713..16137731 | 17..35 | 100 | | Minus |
BS17942.3prime Sequence
766 bp (708 high quality bases) assembled on 2007-05-30
> BS17942.3prime
ATGGTCTAGAAAGCTTCTACAACTTTGTGTTGACAATATCCTCTCGCGAC
TCGGTGGTCTGAACCTCGTTCCACTTCTGGATTTTACCCGATCCGAAGAC
CCAGAAAAACAGCGCAGGCAATATGTAGGCAGCGGCTCCAATGATAAACA
CCCAGTGCCACTGATCGATTGTGTTCTCGTTCTTTGTAAAGGCGGCCACA
ATCAGAGGCGAAAAGATTCCGGGCGTGGTGCCAACACAGTTAATGATGCC
GTACAGCGTGCCCGCATAGTTGGGCGCCAGATCCTGTGAGTTGGCCAAAT
TGGAGGCGGTGGCAGCTCCGTTGAAGCCCAGCGAAATGGTCATAATGGCA
ACGCACACATAGGGATCGCGACCAAAGTAGGCCAGGATGATCAGCATGAC
GCCGGGCAAGATGTGAGAGGGCAGGCAGAAGGCCTTGCGCATGCGGGTCA
CCGACAACCAGCCACGTCGACGTATCCAATCCGCCACGGCGCCAAAACCG
AAGGCGCAGAGCAGACGTGCCACATGTGGCAGGCTGGACAGGAAGCCAGC
GGACGAGAGATTGAAGCCCAGGACCTCGCTCAAGAACTTGGGCGTGGCGG
TAATCAGGAAGAACAGACCCCACATGCTGCCGTAGTGGAGCATCATGAGC
GACCAGAAGGGCAGCGACAGGACGAGCTCCTTGTATGGTGGCCACTTCTT
CTTGTTGCTCAGAGTGTCGCCCAAGCTGCTTTCGATATACTCCCGCTCCT
TCAAACTGATCGTACT
BS17942.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-PA | 1398 | CG9864-RA | 649..1398 | 766..17 | 3725 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-RB | 1673 | CG9864-RB | 810..1559 | 766..17 | 3735 | 99.9 | Minus |
CG9864-RA | 1638 | CG9864-RA | 775..1524 | 766..17 | 3735 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20248774..20249055 | 418..699 | 1410 | 100 | Plus |
2R | 25286936 | 2R | 20248468..20248709 | 176..417 | 1210 | 100 | Plus |
2R | 25286936 | 2R | 20248244..20248404 | 17..177 | 805 | 100 | Plus |
2R | 25286936 | 2R | 20249114..20249182 | 698..766 | 330 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:37:10 has no hits.
BS17942.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:51:09 Download gff for
BS17942.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-PA | 649..1398 | 17..766 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:28 Download gff for
BS17942.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 775..1527 | 10..766 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:17 Download gff for
BS17942.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 775..1527 | 10..766 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:17 Download gff for
BS17942.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20248241..20248402 | 10..175 | 97 | <- | Plus |
2R | 20248468..20248709 | 176..417 | 100 | <- | Plus |
2R | 20248774..20249053 | 418..697 | 100 | <- | Plus |
2R | 20249114..20249182 | 698..766 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:28 Download gff for
BS17942.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16135746..16135907 | 10..175 | 97 | <- | Plus |
arm_2R | 16135973..16136214 | 176..417 | 100 | <- | Plus |
arm_2R | 16136279..16136558 | 418..697 | 100 | <- | Plus |
arm_2R | 16136619..16136687 | 698..766 | 98 | | Plus |
BS17942.5prime Sequence
922 bp (819 high quality bases) assembled on 2007-05-30
> BS17942.5prime
GAAGTTATCAGTCGACATGGCCTTCATGCCGTGCTTCTATGTGCCCAAGC
GGATTAACCTGGCGATCATGCTCTTCATGGCCTGCCTCCTCAGCTACATG
ATGCGAGTGAATCTCTCGATCAACATCATCGCCATGGTGGAGGACACGAG
CAGCCACGAGAATGGAACGGAGGTGGAGGCACTGCCCGATTATGGACCGC
GCTACAACTGGACGCAATCGGATCAGGCTCTGCTGCTGGGTGCCTATTTC
TATGGCTATATGATCACCTCACTGCCCGCCGGCACTTTGGCCGAGATGCT
GGGAGCCAGAAATGTGGCAGGTTACAGTTGCCTGGTGGCCGGCATCCTGA
CAGCTCTAACTCCGGCGGCAGCTGCCTGGGACAAATATGCGGTGTTTGCC
GTGCGTTTCTTGATCGGCTTCCTCAACGGTGTCGTGTATCCGTGTTGCCA
CAGCCTTGTTTCCAAGTGGTCGCCTCCGGATGAGAAGGGCAAGTTTGTGG
CCTCGCTGATGGGTGGCACTTTTGGCACCGTCATCACATGGCCCATTAGC
GGTGTGATCATCGAGAATCTGGGCTGGGATTGGGCCTTCTACATTGTGGG
CATATTCGTGCTGGTGGTGGTCGCTATATGGTTCTACCTTGTGGCAGATA
CTCCTGCCCAGCACAGTACGATCAGTCTGAAGGAGCGGGAGTATATCGAA
AGCAGCTTGGGCGACACTCTGAGCAACAAGAAGAAGTGGCCACCATACAA
NGAGCTCGTCCTGTCGCTGCCCTTCTGGTCGCTCATGATGCTCCACTACG
GCAGCATGTGGGGTCTGTTCTTCCCTGATACCGCCACGCCCAAGTCTTGA
GCGAGGTCCTGGGCTTCAATCTCTCGTCCGCTGGCTTCCTGTCCAGCCTG
CCACATGTGGCACGTCTGCTCT
BS17942.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-PA | 1398 | CG9864-RA | 1..808 | 17..824 | 4021 | 99.8 | Plus |
CG9864-PA | 1398 | CG9864-RA | 830..907 | 845..922 | 390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-RB | 1673 | CG9864-RB | 158..1068 | 13..922 | 4459 | 99.5 | Plus |
CG9864-RA | 1638 | CG9864-RA | 123..1033 | 13..922 | 4459 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20249114..20249656 | 733..191 | 2715 | 100 | Minus |
2R | 25286936 | 2R | 20248864..20249055 | 922..732 | 839 | 96.9 | Minus |
2R | 25286936 | 2R | 20249747..20249901 | 190..36 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:36:57 has no hits.
BS17942.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:51:14 Download gff for
BS17942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-PA | 1..907 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:36 Download gff for
BS17942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 123..1033 | 13..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:53 Download gff for
BS17942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 123..1033 | 13..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:53 Download gff for
BS17942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20248864..20249053 | 734..922 | 97 | <- | Minus |
2R | 20249114..20249656 | 191..733 | 100 | <- | Minus |
2R | 20249747..20249901 | 36..190 | 100 | <- | Minus |
2R | 20250208..20250230 | 13..35 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:36 Download gff for
BS17942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16136369..16136558 | 734..922 | 97 | <- | Minus |
arm_2R | 16136619..16137161 | 191..733 | 100 | <- | Minus |
arm_2R | 16137252..16137406 | 36..190 | 100 | <- | Minus |
arm_2R | 16137713..16137735 | 13..35 | 95 | | Minus |
BS17942.pep Sequence
Translation from 16 to 1413
> BS17942.pep
MAFMPCFYVPKRINLAIMLFMACLLSYMMRVNLSINIIAMVEDTSSHENG
TEVEALPDYGPRYNWTQSDQALLLGAYFYGYMITSLPAGTLAEMLGARNV
AGYSCLVAGILTALTPAAAAWDKYAVFAVRFLIGFLNGVVYPCCHSLVSK
WSPPDEKGKFVASLMGGTFGTVITWPISGVIIENLGWDWAFYIVGIFVLV
VVAIWFYLVADTPAQHSTISLKEREYIESSLGDTLSNKKKWPPYKELVLS
LPFWSLMMLHYGSMWGLFFLITATPKFLSEVLGFNLSSAGFLSSLPHVAR
LLCAFGFGAVADWIRRRGWLSVTRMRKAFCLPSHILPGVMLIILAYFGRD
PYVCVAIMTISLGFNGAATASNLANSQDLAPNYAGTLYGIINCVGTTPGI
FSPLIVAAFTKNENTIDQWHWVFIIGAAAYILPALFFWVFGSGKIQKWNE
VQTTESREDIVNTKL*
BS17942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:56:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-PB | 465 | CG9864-PB | 1..465 | 1..465 | 2463 | 100 | Plus |
CG9864-PA | 465 | CG9864-PA | 1..465 | 1..465 | 2463 | 100 | Plus |
CG3036-PB | 493 | CG3036-PB | 15..470 | 3..449 | 778 | 36.2 | Plus |
CG3036-PA | 493 | CG3036-PA | 15..470 | 3..449 | 778 | 36.2 | Plus |
NaPi-T-PB | 524 | CG10207-PB | 4..469 | 9..449 | 750 | 32.4 | Plus |