Clone Sequence Records
BS17949.3prime Sequence
655 bp (632 high quality bases) assembled on 2007-05-30
> BS17949.3prime
ATGGTCTAGAAAGCTTTTAACCGGCGGCAGGGTCCTTCTTGGTTTTCTCC
TTTTTGCCTTTCTGCTTCTCGGCGGCGGCCAACTCCAGATCAATGGGAGC
GGGCTTGACGAACGGAATCTCATCCTGGAACTTCGCCGGCATGTACTTCT
TCAATGGCTCCGGCACCTTGATGCCCGTCTCTGTCTGATGGGTCTCCAGG
ATGGCGCAGATGACGCGAGTGGCTGCGCACATCGTGGCGTTCAGCATGTG
CACATAGTCTACGGCGGCGTTCATCTTCTTAGTCTGGCCGAAACGGACGA
GCAGACGACGGGCCTGGTAGTCCAAGCAGTTAGAGCACGAGACAAGTTCC
CTGTAAGCGCCGCTGCCGCCGAACCAGGCCTCGAGATCCAGCTTCTTGGA
GGCAGCATGGTTGAGGGCACCGGAAACGATGTTAACAACGCGATATGGAA
TGCCCAGCGACTGGCAGAACTGCTCCGCATTCCCGATCATCTCGTCCATC
ATCTCCCACGACTTGTTGTCGTGTGGGGAGGTCAGTACGAACTGCTCCAC
CTTCTCGAACTGGTGGACGCGGAAAATGCCGCGAGTGTCGCGTCCGTGCG
AGCCCACTTCCTGTCGGAAGCAGGTGGACAGACCAGCATACTTAATGGGC
AGCGA
BS17949.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-PA | 1506 | CG17259-RA | 868..1506 | 655..17 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-RB | 1771 | CG17259-RB | 981..1619 | 655..17 | 3195 | 100 | Minus |
| CG17259-RA | 1911 | CG17259-RA | 1121..1759 | 655..17 | 3195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3035645..3036283 | 17..655 | 3195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:07:19 has no hits.
BS17949.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:52:00 Download gff for
BS17949.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-PA | 869..1506 | 17..654 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:11:24 Download gff for
BS17949.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 1122..1761 | 13..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:01 Download gff for
BS17949.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 1122..1761 | 13..654 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:01 Download gff for
BS17949.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3035643..3036282 | 13..654 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:11:24 Download gff for
BS17949.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3035643..3036282 | 13..654 | 99 | | Plus |
BS17949.5prime Sequence
789 bp (721 high quality bases) assembled on 2007-05-30
> BS17949.5prime
GAAGTTATCAGTCGACATGGTGCTGGATCTGGATCTGTTTCGCAGCGACA
AGGGGGGCAACCCGGACCTCGTGCGCGAAAATCAAAAGAAGCGCTTCAAG
GATGTGGCGCTGGTGGAGACTGTGATCGCCAAGGATACGGAGTGGCGTCA
GTGCCGCCACCGTGCCGACAACCTGAACAAGGTCAAGAACGTCTGCAGCA
AGGTGATCGGCGAGAAGATGAAGAAGAAGGAGCCGGTTGGTGCCATGAGC
GAGGACCTGCCCGCAGACGTGACCAAGGACCTCACAGAGATTGTAGCCGA
GACACTGCAGCCGTTGACCGTCAACCAGATCAAGCAGCTACGCGTTCTCA
TCGACGACGCAATGACCGAGAACCAGAAGTCGCTAGAGCTTGCCGAGCAG
ACGAGGAACACCTCACTGCGGGAGGTGGGCAACCACCTGCACGAGTCCGT
GCCTGTGTCTAACGACGAGGACGAGAACCGCGTGGAGCGCACCTTTGGCG
ACTGCGAAAAGCGCGGCAAGTACTCGCATGTGGACCTCATCGTGATGATC
GACGGCATGAACGCGGAGAAAGGAGCCGTGGTGTCCGGCGGACGTGGTTA
CTTTCTTACCGGAGCCGCAGTCTTTTTGGAGCAGGCTCTTATCCAGCACG
CTCTGCACCTGCTGTACGCCCGTGACTACGTTCCCCTGTACACGCCCTTC
TTCATGCGAAAGGAGGTAATGCANGAGGTGGCCCAGCTGTCACAGTTCGA
CGAGGAGCTCTACAAAGTGGTGGGCAAGGGCAGCGAGAA
BS17949.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-PA | 1506 | CG17259-RA | 1..773 | 17..789 | 3821 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-RB | 1771 | CG17259-RB | 114..886 | 17..789 | 3839 | 99.7 | Plus |
| CG17259-RA | 1911 | CG17259-RA | 254..1026 | 17..789 | 3839 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3036378..3037150 | 789..17 | 3839 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-13 06:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Circe | 7450 | Circe CIRC 7450bp | 6454..6523 | 73..7 | 109 | 64.3 | Minus |
BS17949.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:52:04 Download gff for
BS17949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:11:30 Download gff for
BS17949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 254..1026 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:21 Download gff for
BS17949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 254..1026 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:21 Download gff for
BS17949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3036378..3037150 | 17..789 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:11:30 Download gff for
BS17949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3036378..3037150 | 17..789 | 99 | | Minus |
BS17949.complete Sequence
1538 bp assembled on 2009-08-26
GenBank Submission: KX803041
> BS17949.complete
GAAGTTATCAGTCGACATGGTGCTGGATCTGGATCTGTTTCGCAGCGACA
AGGGGGGCAACCCGGACCTCGTGCGCGAAAATCAAAAGAAGCGCTTCAAG
GATGTGGCGCTGGTGGAGACTGTGATCGCCAAGGATACGGAGTGGCGTCA
GTGCCGCCACCGTGCCGACAACCTGAACAAGGTCAAGAACGTCTGCAGCA
AGGTGATCGGCGAGAAGATGAAGAAGAAGGAGCCGGTTGGTGCCATGAGC
GAGGACCTGCCCGCAGACGTGACCAAGGACCTCACAGAGATTGTAGCCGA
GACACTGCAGCCGTTGACCGTCAACCAGATCAAGCAGCTACGCGTTCTCA
TCGACGACGCAATGACCGAGAACCAGAAGTCGCTAGAGCTTGCCGAGCAG
ACGAGGAACACCTCACTGCGGGAGGTGGGCAACCACCTGCACGAGTCCGT
GCCTGTGTCTAACGACGAGGACGAGAACCGCGTGGAGCGCACCTTTGGCG
ACTGCGAAAAGCGCGGCAAGTACTCGCATGTGGACCTCATCGTGATGATC
GACGGCATGAACGCGGAGAAAGGAGCCGTGGTGTCCGGCGGACGTGGTTA
CTTTCTTACCGGAGCCGCAGTCTTTTTGGAGCAGGCTCTTATCCAGCACG
CTCTGCACCTGCTGTACGCCCGTGACTACGTTCCCCTGTACACGCCCTTC
TTCATGCGAAAGGAGGTAATGCAGGAGGTGGCCCAGCTGTCACAGTTCGA
CGAGGAGCTCTACAAGGTGGTGGGCAAGGGCAGCGAGAAGGCGGAGGAGG
TGGGCATCGATGAGAAGTACCTGATCGCCACCTCAGAGCAGCCTATCGCC
GCCTACCATCGCGATGAATGGCTACCGGAGTCTTCGCTGCCCATTAAGTA
TGCTGGTCTGTCCACCTGCTTCCGACAGGAAGTGGGCTCGCACGGACGCG
ACACTCGCGGCATTTTCCGCGTCCACCAGTTCGAGAAGGTGGAGCAGTTC
GTACTGACCTCCCCACACGACAACAAGTCGTGGGAGATGATGGACGAGAT
GATCGGGAATGCGGAGCAGTTCTGCCAGTCGCTGGGCATTCCATATCGCG
TTGTTAACATCGTTTCCGGTGCCCTCAACCATGCTGCCTCCAAGAAGCTG
GATCTCGAGGCCTGGTTCGGCGGCAGCGGCGCTTACAGGGAACTTGTCTC
GTGCTCTAACTGCTTGGACTACCAGGCCCGTCGTCTGCTCGTCCGTTTCG
GCCAGACTAAGAAGATGAACGCCGCCGTAGACTATGTGCACATGCTGAAC
GCCACGATGTGCGCAGCCACTCGCGTCATCTGCGCCATCCTGGAGACCCA
TCAGACAGAGACGGGCATCAAGGTGCCGGAGCCATTGAAGAAGTACATGC
CGGCGAAGTTCCAGGATGAGATTCCGTTCGTCAAGCCCGCTCCCATTGAT
CTGGAGTTGGCCGCCGCCGAGAAGCAGAAAGGCAAAAAGGAGAAAACCAA
GAAGGACCCTGCCGCCGGTTAAAAGCTTTCTAGACCAT
BS17949.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-RB | 1506 | CG17259-PB | 1..1506 | 17..1522 | 7530 | 100 | Plus |
| CG17259-RA | 1506 | CG17259-PA | 1..1506 | 17..1522 | 7530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-RB | 1771 | CG17259-RB | 114..1619 | 17..1522 | 7530 | 100 | Plus |
| CG17259-RA | 1911 | CG17259-RA | 254..1759 | 17..1522 | 7530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3035645..3037150 | 1522..17 | 7530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:34:03 has no hits.
BS17949.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:12 Download gff for
BS17949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 254..1757 | 17..1520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:16 Download gff for
BS17949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 254..1757 | 17..1520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:35 Download gff for
BS17949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 254..1757 | 17..1520 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:35 Download gff for
BS17949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3035647..3037150 | 17..1520 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:16 Download gff for
BS17949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3035647..3037150 | 17..1520 | 100 | | Minus |
BS17949.pep Sequence
Translation from 16 to 1521
> BS17949.pep
MVLDLDLFRSDKGGNPDLVRENQKKRFKDVALVETVIAKDTEWRQCRHRA
DNLNKVKNVCSKVIGEKMKKKEPVGAMSEDLPADVTKDLTEIVAETLQPL
TVNQIKQLRVLIDDAMTENQKSLELAEQTRNTSLREVGNHLHESVPVSND
EDENRVERTFGDCEKRGKYSHVDLIVMIDGMNAEKGAVVSGGRGYFLTGA
AVFLEQALIQHALHLLYARDYVPLYTPFFMRKEVMQEVAQLSQFDEELYK
VVGKGSEKAEEVGIDEKYLIATSEQPIAAYHRDEWLPESSLPIKYAGLST
CFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDNKSWEMMDEMIGNAE
QFCQSLGIPYRVVNIVSGALNHAASKKLDLEAWFGGSGAYRELVSCSNCL
DYQARRLLVRFGQTKKMNAAVDYVHMLNATMCAATRVICAILETHQTETG
IKVPEPLKKYMPAKFQDEIPFVKPAPIDLELAAAEKQKGKKEKTKKDPAA
G*
BS17949.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-PB | 501 | CG17259-PB | 1..501 | 1..501 | 2594 | 100 | Plus |
| CG17259-PA | 501 | CG17259-PA | 1..501 | 1..501 | 2594 | 100 | Plus |
| Aats-ser-PB | 417 | CG4938-PB | 16..394 | 53..461 | 372 | 26.8 | Plus |
| Aats-ser-PA | 417 | CG4938-PA | 16..394 | 53..461 | 372 | 26.8 | Plus |
