Clone Sequence Records
BS17953.complete Sequence
272 bp assembled on 2010-02-09
GenBank Submission: KX803240
> BS17953.complete
GAAGTTATCAGTCGACATGTTCAAATACTTCGCTCTGTGCCTGTTCGCCA
TCGTGGCCTGCGTCTCTGCCAAGCCGGCGGTGCTCGCTTCTCCTCTGGCC
TACAGCGCCTACTCCGCTCCCTATGTGGCAGCTGCTCCTTACTCGGCTGC
CTACACCGCGGCATACACCGCTCCAGTGGCCGCCGCCTACTCCGCCTACA
CGTACCCCTATGCGTCCGCCTACTCCGCCTACCCCTATGCCGCCTACTAC
CGTTAAAAGCTTTCTAGACCAT
BS17953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13067-RA | 240 | CG13067-PA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13067-RA | 564 | CG13067-RA | 57..298 | 15..256 | 1210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16271425..16271652 | 29..256 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:13:17 has no hits.
BS17953.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:04 Download gff for
BS17953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13067-RA | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:47 Download gff for
BS17953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13067-RA | 37..269 | 22..254 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:27 Download gff for
BS17953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13067-RA | 64..296 | 22..254 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:04 Download gff for
BS17953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13067-RA | 24..275 | 9..261 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:29 Download gff for
BS17953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13067-RA | 64..296 | 22..254 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:29 Download gff for
BS17953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16271425..16271650 | 29..254 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:27 Download gff for
BS17953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16264525..16264750 | 29..254 | 100 | | Plus |
BS17953.5prime Sequence
270 bp (270 high quality bases) assembled on 2007-05-30
> BS17953.5prime
GAAGTTATCACTCTACATGTTCAAATACTTCGCTCTGTGCCTGTTCGCCA
TCGTGGCCTGCGTCTCTGCCAAGCCGGCGGTGCTCGCTTCTCCTCTGGCC
TACAGCGCCTACTCCGCTCCCTATGTGGCAGCTGCTCCTTACTCGGCTGC
CTACACCGCGGCATACACCGCTCCAGTGGCCGCCGCCTACTCCGCCTACA
CGTACCCCTATGCGTCCGCCTACTCCGCCTACCCCTATGCCGCCTACTAC
CGTTAAAAGCTTTCTAGACC
BS17953.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13067-PA | 240 | CG13067-RA | 1..240 | 17..256 | 1200 | 100 | Plus |
| CG13067-PB | 624 | CG13067-RB | 397..624 | 29..256 | 1140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13067-RA | 564 | CG13067-RA | 57..298 | 15..256 | 1210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16271425..16271652 | 29..256 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:07:38 has no hits.
BS17953.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:52:29 Download gff for
BS17953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13067-PA | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:11:36 Download gff for
BS17953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13067-RA | 57..302 | 15..261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:39 Download gff for
BS17953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13067-RA | 57..302 | 15..261 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:39 Download gff for
BS17953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16271425..16271656 | 29..261 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:11:36 Download gff for
BS17953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16264525..16264756 | 29..261 | 99 | | Plus |
BS17953.3prime Sequence
270 bp (270 high quality bases) assembled on 2007-05-30
> BS17953.3prime
ATGGTCTAGAAAGCTTTTAACCGTAGTAGGCGGCATAGGGGTAGGCGGAG
TAGGCGGACGCATAGGGGTACGTGTAGGCGGAGTAGGCGGCGGCCACTGG
AGCGGTGTATGCCGCGGTGTAGGCAGCCGAGTAAGGAGCAGCTGCCACAT
AGGGAGCGGAGTAGGCGCTGTAGGCCAGAGGAGAAGCGAGCACCGCCGGC
TTGGCAGAGACGCAGGCCACGATGGCGAACAGGCACAGAGCGAAGTATTT
GAACATGTCGACTGATAACT
BS17953.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13067-PA | 240 | CG13067-RA | 1..240 | 256..17 | 1175 | 99.5 | Minus |
| CG13067-PB | 624 | CG13067-RB | 397..624 | 244..17 | 1115 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13067-RA | 564 | CG13067-RA | 57..298 | 258..17 | 1195 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16271425..16271652 | 244..17 | 1125 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:37:57 has no hits.
BS17953.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:52:24 Download gff for
BS17953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13067-PA | 1..240 | 17..256 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:39 Download gff for
BS17953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13067-RA | 51..302 | 12..264 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:44 Download gff for
BS17953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13067-RA | 51..302 | 12..264 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:44 Download gff for
BS17953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16271425..16271656 | 12..244 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:39 Download gff for
BS17953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16264525..16264756 | 12..244 | 98 | | Minus |
BS17953.pep Sequence
Translation from 122 to 272
> BS17953.pep
MWQLLLTRLPTPRHTPLQWPPPTPPTRTPMRPPTPPTPMPPTTVKSFLDH
Sequence BS17953.pep has no blast hits.
