Clone Sequence Records
BS17960.complete Sequence
1274 bp assembled on 2009-12-07
GenBank Submission: KX800681
> BS17960.complete
GAAGTTATCAGTCGACATGGCAGCGGCACCCGAGTGGCTTACCCACGAAT
ACATCGAGCATGCACTTCGCTGCCACTACAAGGATGAAGGACTAACCATA
ACTCAGCTGCAGATAAATCCCGCCCTGGGGCCTGGTGAAAACTACGGCGG
AGTTCTGACCCGTGCTCGAGTGGAGTTCACACTGTCTAACAAGGAGAAAA
ATGTGCAGAACCTGATTGTAAAGACGGAAATCGATGATGATGAGTTGACC
CAGGAACTGATGGCCCCATATGATATTTACAACCGCGAGATGACCATCTA
CCAGGAAGTGCTGCCCAAATGCAGGGAGCTGCTTAATGAGATCGGAGATA
CTGAAAGGATATTTCCCACGGCCATCTATGTGGATCGCGAGCGTATGGCC
ATTATCTTCGAAGATCTTTCTGTGGTGGGCTACGTAATGGCCGATCGAGT
GCGTCGCCTCAACGAGGAGCACACTCACCTCATCCTGCGCAAGTTGGCCA
AATTCCATGCCGCCACAGCGGTCTTGAACGAGCGACAAAGTGGATGCCTC
GAAAGTTACGATCGTGGTTTCTTTAATCGCTATACAAACGCCTACAGTGG
CTACTTTGTGGGTGGTCTGCTGGCCGCCGCTCGCTGGATGAGCAAGGTGC
CCACGTTGGCCCACTACGGAGAGAAGCTATTCGCTTTGGCTCCGCACTAC
ATGGACATCGGCAGGGAGTGCTTTGCACCCACTCCGGGTCAAGTTAATGT
TCTGGCCCATGGCGATGTGTGGACCAACAATGTGATGTTCAAGTACGATC
CGAATACGGGACGACCCGTCGATGTGCTGCTCATTGACTTCCAGTACTCC
TTCTGGGGCTCCCCATGCATCGATCTCCATCACCTGTTCAATACTTCTCT
AAAGGAGCCACTGCGTAGAGATCAGCAGAACGGGCTCTTCCAGTTCTACC
ACAAGATATTCACTGAGACGTTAGAAAAGCTCAACTATCGTCAAAATCAG
ATTCCCAGTTTGCATCAGTTTAAATTGGAGGTGGAGCAAAAGAGATTCTT
TGCTTTGCATTCTACGGTAGTGGTGCAGCCAGTTATGATTAGCCAGGATC
CCACGGATGCCTGTTTCAATGCCTTGATGAACGATGATGAGCGTGGCATT
CGGTTTAAGAACCGATTATATAACAACCCTACAGTTCAACAAAATTTACA
TTCCCTGGTTCCCTTCTTCGATAGAAAGGGACTGCTGGAAGTTAACCAGA
CCTGTTAAAAGCTTTCTAGACCAT
BS17960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-RA | 1242 | CG10514-PA | 1..1242 | 17..1258 | 6210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-RA | 1358 | CG10514-RA | 39..1280 | 17..1258 | 6210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25278773..25279808 | 1052..17 | 5180 | 100 | Minus |
| 3R | 32079331 | 3R | 25278505..25278711 | 1258..1052 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:43:24 has no hits.
BS17960.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:24 Download gff for
BS17960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 1..1242 | 17..1258 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:01 Download gff for
BS17960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 12..1251 | 17..1256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:51 Download gff for
BS17960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 39..1278 | 17..1256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:24 Download gff for
BS17960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 12..1264 | 17..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:19 Download gff for
BS17960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 39..1278 | 17..1256 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:19 Download gff for
BS17960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25278507..25278710 | 1053..1256 | 100 | <- | Minus |
| 3R | 25278773..25279808 | 17..1052 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:51 Download gff for
BS17960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21104229..21104432 | 1053..1256 | 100 | <- | Minus |
| arm_3R | 21104495..21105530 | 17..1052 | 100 | | Minus |
BS17960.3prime Sequence
817 bp (768 high quality bases) assembled on 2007-05-30
> BS17960.3prime
ATGGTCTAGAAAGCTTTTAACAGGTCTGGTTAACTTCCAGCAGTCCCTTT
CTATCGAAGAAGGGAACCAGGGAATGTAAATTTTGTTGAACTGTAGGGTT
GTTATATAATCGGTTCTTAAACCGAATGCCACGCTCATCATCGTTCATCA
AGGCATTGAAACAGGCATCCGTGGGATCCTGGCTAATCATAACTGGCTGC
ACCACTACCGTAGAATGCAAAGCAAAGAATCTCTTTTGCTCCACCTCCAA
TTTAAACTGATGCAAACTGGGAATCTGATTTTGACGATAGTTGAGCTTTT
CTAACGTCTCAGTGAATATCTTGTGGTAGAACTGGAAGAGCCCGTTCTGC
TGATCTCTACGCAGTGGCTCCTTTAGAGAAGTATTGAACAGGTGATGGAG
ATCGATGCATGGGGAGCCCCAGAAGGAGTACTGGAAGTCAATGAGCAGCA
CATCGACGGGTCGTCCCGTATTCGGATCGTACTTGAACATCACATTGTTG
GTCCACACATCGCCATGGGCCAGAACATTAACTTGACCCGGAGTGGGTGC
AAAGCACTCCCTGCCGATGTCCATGTAGTGCGGAGCCAAAGCGAATAGCT
TCTCTCCGTAGTGGGCCAACGTGGGCACCTTGCTCATCCAGCGAGCGGCG
GCCAGCAGACCACCCACAAAGTAGCCACTGTAGGCGTTTGTATAGCGATT
AAAGAAACCACGATCGTAACTTTCGAGGCATCCACTTTGTCGCTCGTTCA
AGACCGCTGTGGCGGCATGGAATTTGGCCAACTTGCGCAGGATGAGGTGA
GTGTGCTCCTCGTTGAG
BS17960.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-PA | 1242 | CG10514-RA | 442..1242 | 817..17 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-RA | 1358 | CG10514-RA | 480..1280 | 817..17 | 4005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25278773..25279367 | 223..817 | 2975 | 100 | Plus |
| 3R | 32079331 | 3R | 25278505..25278711 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:48:12 has no hits.
BS17960.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:53:20 Download gff for
BS17960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-PA | 442..1242 | 17..817 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:43 Download gff for
BS17960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 480..1291 | 6..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:48 Download gff for
BS17960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 480..1291 | 6..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:48 Download gff for
BS17960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25278494..25278710 | 6..222 | 98 | <- | Plus |
| 3R | 25278773..25279367 | 223..817 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:43 Download gff for
BS17960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21104216..21104432 | 6..222 | 98 | <- | Plus |
| arm_3R | 21104495..21105089 | 223..817 | 100 | | Plus |
BS17960.5prime Sequence
881 bp (732 high quality bases) assembled on 2007-05-30
> BS17960.5prime
GAAGTTATCACTCGACATGGCAGCGGCACCCGAGTGGCTTACCCACGAAT
ACATCGAGCATGCACTTCGCTGCCACTACAAGGATGAAGGACTAACCATA
ACTCAGCTGCAGATAAATCCCGCCCTGGGGCCTGGTGAAAACTACGGCGG
AGTTCTGACCCGTGCTCGAGTGGAGTTCACACTGTCTAACAAGGAGAAAA
ATGTGCAGAACCTGATTGTAAAGACGGAAATCGATGATGATGAGTTGACC
CAGGAACTGATGGCCCCATATGATATTTACAACCGCGAGATGACCATCTA
CCAGGAAGTGCTGCCCAAATGCAGGGAGCTGCTTAATGAGATCGGAGATA
CTGAAAGGATATTTCCCACGGCCATCTATGTGGATCGCGAGCGTATGGCC
ATTATCTTCGAAGATCTTTCTGTGGTGGGCTACGTAATGGCCGATCGAGT
GCGTCGCCTCAACGAGGAGCACACTCACCTCATCCTGCGCAAGTTGGCCA
AATTCCATGCCGCCACAGCGGTCTTGAACGAGCGACAAAGTGGATGCCTC
GAAAGTTACGATCGTGGTTTCTTTAATCGCTATACAAACGCCTACAGTGG
CTACTTTGTGGGTGGTCTGCTGGCCGCCGCTCGCTGGATGAGCAAGGTGC
CCACGTTGGCCCACTACGGAGAGAAGCTATTCGCTTTGGCTCCGCACTAC
ATGGACATCGGCAGGGAGTGCTTTGCACCCACTCCGGGTCAAGTTAATGT
TCTGGCCCATGGCGATGTGTGGACCACAATGTGATGTTCAAGTACGATCC
GAATACGGGACGACCCGTCGATGTGCTGCTCATTGACTTCCAGTACTCCT
TCTGGGGCTCCCCATGCATCGATCTCCATCA
BS17960.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-PA | 1242 | CG10514-RA | 1..760 | 17..776 | 3800 | 100 | Plus |
| CG10514-PA | 1242 | CG10514-RA | 761..866 | 776..881 | 530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-RA | 1358 | CG10514-RA | 39..904 | 17..881 | 4305 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25278943..25279808 | 881..17 | 4280 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:38:01 has no hits.
BS17960.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:53:24 Download gff for
BS17960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-PA | 1..865 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:25 Download gff for
BS17960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 39..903 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:11 Download gff for
BS17960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 39..903 | 17..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:11 Download gff for
BS17960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25278944..25279808 | 17..880 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:25 Download gff for
BS17960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21104666..21105530 | 17..880 | 99 | | Minus |
BS17960.pep Sequence
Translation from 16 to 1257
> BS17960.pep
MAAAPEWLTHEYIEHALRCHYKDEGLTITQLQINPALGPGENYGGVLTRA
RVEFTLSNKEKNVQNLIVKTEIDDDELTQELMAPYDIYNREMTIYQEVLP
KCRELLNEIGDTERIFPTAIYVDRERMAIIFEDLSVVGYVMADRVRRLNE
EHTHLILRKLAKFHAATAVLNERQSGCLESYDRGFFNRYTNAYSGYFVGG
LLAAARWMSKVPTLAHYGEKLFALAPHYMDIGRECFAPTPGQVNVLAHGD
VWTNNVMFKYDPNTGRPVDVLLIDFQYSFWGSPCIDLHHLFNTSLKEPLR
RDQQNGLFQFYHKIFTETLEKLNYRQNQIPSLHQFKLEVEQKRFFALHST
VVVQPVMISQDPTDACFNALMNDDERGIRFKNRLYNNPTVQQNLHSLVPF
FDRKGLLEVNQTC*
BS17960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-PA | 413 | CG10514-PA | 1..413 | 1..413 | 2200 | 100 | Plus |
| CG11892-PA | 439 | CG11892-PA | 33..439 | 4..411 | 1089 | 50.5 | Plus |
| CG11892-PB | 439 | CG11892-PB | 33..439 | 4..411 | 1089 | 50.5 | Plus |
| CG31380-PA | 405 | CG31380-PA | 4..398 | 7..408 | 949 | 46.6 | Plus |
| CG10513-PB | 422 | CG10513-PB | 15..420 | 4..409 | 892 | 44.9 | Plus |
