Clone Sequence Records
BS17965.complete Sequence
422 bp assembled on 2010-02-09
GenBank Submission: KX803730
> BS17965.complete
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGAGAACAACAATGCAGCCCAGAAGAAGCTGCAGCAGACC
CAAGCCAAGGTGGACGAGGTGGTCGGGATTATGCGTGTGAACGTGGAGAA
GGTCCTGGAGCGGGACCAGAAGCTATCGGAACTGGGCGAGCGTGCGGATC
AGCTGGAGCAGGGAGCATCCCAGTTCGAGCAGCAGGCCGGCAAGCTGAAG
CGCAAGCAATGGTGGGCCAACATGAAGATGATGATCATCCTGGGCGTGAT
AGCCGTTGTGCTGCTCATCATCGTTCTGGTGTCCGTTTGGCCGTCTAGTA
GTGACAGCGGCAGTGGTGGAGGAAACAAGGCCATCACCCAAGCACCGCCG
CACTAAAAGCTTTCTAGACCAT
BS17965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RE | 390 | CG12210-PE | 1..390 | 17..406 | 1935 | 99.7 | Plus |
Syb-RA | 390 | CG12210-PA | 1..390 | 17..406 | 1935 | 99.7 | Plus |
Syb-RC | 459 | CG12210-PC | 117..459 | 64..406 | 1700 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RE | 814 | CG12210-RE | 109..509 | 17..417 | 1945 | 99 | Plus |
Syb-RA | 852 | CG12210-RA | 147..547 | 17..417 | 1945 | 99 | Plus |
Syb-RC | 921 | CG12210-RC | 263..616 | 64..417 | 1710 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10250879..10251144 | 329..64 | 1315 | 99.6 | Minus |
2R | 25286936 | 2R | 10249740..10249828 | 417..329 | 400 | 96.6 | Minus |
3L | 28110227 | 3L | 1635328..1635439 | 250..139 | 245 | 81.2 | Minus |
2R | 25286936 | 2R | 10251927..10251974 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:12:32 has no hits.
BS17965.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:07 Download gff for
BS17965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 1..390 | 17..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:33 Download gff for
BS17965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 139..526 | 17..404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:08 Download gff for
BS17965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 147..534 | 17..404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:07 Download gff for
BS17965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 134..539 | 12..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:13 Download gff for
BS17965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 147..534 | 17..404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:13 Download gff for
BS17965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10249753..10249827 | 330..404 | 100 | <- | Minus |
2R | 10250879..10251144 | 64..329 | 99 | <- | Minus |
2R | 10251928..10251974 | 17..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:08 Download gff for
BS17965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6137258..6137332 | 330..404 | 100 | <- | Minus |
arm_2R | 6138384..6138649 | 64..329 | 99 | <- | Minus |
arm_2R | 6139433..6139479 | 17..63 | 100 | | Minus |
BS17965.3prime Sequence
420 bp (420 high quality bases) assembled on 2007-05-30
> BS17965.3prime
ATGGTCTAGAAAGCTTTTAGTGCGGCGGTGCTTGGGTGATGGCCTTGTTT
CCTCCACCACTGCCGCTGTCACTACTAGACGGCCAAACGGACACCAGAAC
GATGATGAGCAGCACAACGGCTATCACGCCCAGGATGATCATCATCTTCA
TGTTGGCCCACCATTGCTTGCGCTTCAGCTTGCCGGCCTGCTGCTCGAAC
TGGGATGCTCCCTGCTCCAGCTGATCCGCACGCTCGCCCAGTTCCGATAG
CTTCTGGTCCCGCTCCAGGACCTTCTCCACGTTCACACGCATAATCCCGA
CCACCTCGTCCACCTTGGCTTGGGTCTGCTGCAGCTTCTTCTGGGCTGCA
TTGTTGTTCTCGTTGTTGTTGGATCCCGAGGGGGAGGGGGCTTCGTTGTT
CTCCATGTCGACTGATAACT
BS17965.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12210-PA | 390 | Syb-RA | 1..390 | 406..17 | 1925 | 99.7 | Minus |
CG12210-PB | 399 | Syb-RB | 117..386 | 359..90 | 1325 | 99.6 | Minus |
CG12210-PB | 399 | Syb-RB | 1..47 | 406..360 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RE | 814 | CG12210-RE | 109..509 | 406..6 | 1945 | 99 | Minus |
Syb-RA | 852 | CG12210-RA | 147..547 | 406..6 | 1945 | 99 | Minus |
Syb-RC | 921 | CG12210-RC | 263..616 | 359..6 | 1710 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10250879..10251144 | 94..359 | 1315 | 99.6 | Plus |
2R | 25286936 | 2R | 10249740..10249828 | 6..94 | 400 | 96.6 | Plus |
3L | 28110227 | 3L | 1635328..1635439 | 173..284 | 245 | 81.2 | Plus |
2R | 25286936 | 2R | 10251927..10251974 | 359..406 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:48:24 has no hits.
BS17965.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:53:56 Download gff for
BS17965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12210-PA | 1..390 | 17..406 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:50 Download gff for
BS17965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 142..547 | 6..411 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:22:56 Download gff for
BS17965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 142..547 | 6..411 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:22:56 Download gff for
BS17965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10249740..10249827 | 6..93 | 96 | <- | Plus |
2R | 10250879..10251144 | 94..359 | 99 | <- | Plus |
2R | 10251928..10251979 | 360..411 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:50 Download gff for
BS17965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6137245..6137332 | 6..93 | 96 | <- | Plus |
arm_2R | 6138384..6138649 | 94..359 | 99 | <- | Plus |
arm_2R | 6139433..6139484 | 360..411 | 96 | | Plus |
BS17965.5prime Sequence
420 bp (420 high quality bases) assembled on 2007-05-30
> BS17965.5prime
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGAGAACAACAATGCAGCCCAGAAGAAGCTGCAGCAGACC
CAAGCCAAGGTGGACGAGGTGGTCGGGATTATGCGTGTGAACGTGGAGAA
GGTCCTGGAGCGGGACCAGAAGCTATCGGAACTGGGCGAGCGTGCGGATC
AGCTGGAGCAGGGAGCATCCCAGTTCGAGCAGCAGGCCGGCAAGCTGAAG
CGCAAGCAATGGTGGGCCAACATGAAGATGATGATCATCCTGGGCGTGAT
AGCCGTTGTGCTGCTCATCATCGTTCTGGTGTCCGTTTGGCCGTCTAGTA
GTGACAGCGGCAGTGGTGGAGGAAACAAGGCCATCACCCAAGCACCGCCG
CACTAAAAGCTTTCTAGACC
BS17965.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12210-PA | 390 | Syb-RA | 1..390 | 17..406 | 1925 | 99.7 | Plus |
CG12210-PB | 399 | Syb-RB | 117..386 | 64..333 | 1325 | 99.6 | Plus |
CG12210-PB | 399 | Syb-RB | 1..47 | 17..63 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RE | 814 | CG12210-RE | 109..509 | 17..417 | 1945 | 99 | Plus |
Syb-RA | 852 | CG12210-RA | 147..547 | 17..417 | 1945 | 99 | Plus |
Syb-RC | 921 | CG12210-RC | 263..616 | 64..417 | 1710 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10250879..10251144 | 329..64 | 1315 | 99.6 | Minus |
2R | 25286936 | 2R | 10249740..10249828 | 417..329 | 400 | 96.6 | Minus |
3L | 28110227 | 3L | 1635328..1635439 | 250..139 | 245 | 81.2 | Minus |
2R | 25286936 | 2R | 10251927..10251974 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:00:31 has no hits.
BS17965.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:54:00 Download gff for
BS17965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12210-PA | 1..390 | 17..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:44:59 Download gff for
BS17965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 142..547 | 12..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:28 Download gff for
BS17965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 142..547 | 12..417 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:28 Download gff for
BS17965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10249740..10249827 | 330..417 | 96 | <- | Minus |
2R | 10250879..10251144 | 64..329 | 99 | <- | Minus |
2R | 10251928..10251979 | 12..63 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:44:59 Download gff for
BS17965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6137245..6137332 | 330..417 | 96 | <- | Minus |
arm_2R | 6138384..6138649 | 64..329 | 99 | <- | Minus |
arm_2R | 6139433..6139484 | 12..63 | 96 | | Minus |
BS17965.pep Sequence
Translation from 16 to 405
> BS17965.pep
MENNEAPSPSGSNNNENNNAAQKKLQQTQAKVDEVVGIMRVNVEKVLERD
QKLSELGERADQLEQGASQFEQQAGKLKRKQWWANMKMMIILGVIAVVLL
IIVLVSVWPSSSDSGSGGGNKAITQAPPH*
BS17965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-PE | 129 | CG12210-PE | 1..129 | 1..129 | 651 | 100 | Plus |
Syb-PA | 129 | CG12210-PA | 1..129 | 1..129 | 651 | 100 | Plus |
Syb-PC | 152 | CG12210-PC | 1..152 | 1..129 | 614 | 84.2 | Plus |
Syb-PD | 109 | CG12210-PD | 1..108 | 1..108 | 526 | 98.1 | Plus |
Syb-PB | 132 | CG12210-PB | 1..131 | 1..108 | 489 | 80.2 | Plus |