Clone BS17965 Report

Search the DGRC for BS17965

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:179
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptSyb-RA
Protein status:BS17965.pep: full length peptide match
Sequenced Size:422

Clone Sequence Records

BS17965.complete Sequence

422 bp assembled on 2010-02-09

GenBank Submission: KX803730

> BS17965.complete
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGAGAACAACAATGCAGCCCAGAAGAAGCTGCAGCAGACC
CAAGCCAAGGTGGACGAGGTGGTCGGGATTATGCGTGTGAACGTGGAGAA
GGTCCTGGAGCGGGACCAGAAGCTATCGGAACTGGGCGAGCGTGCGGATC
AGCTGGAGCAGGGAGCATCCCAGTTCGAGCAGCAGGCCGGCAAGCTGAAG
CGCAAGCAATGGTGGGCCAACATGAAGATGATGATCATCCTGGGCGTGAT
AGCCGTTGTGCTGCTCATCATCGTTCTGGTGTCCGTTTGGCCGTCTAGTA
GTGACAGCGGCAGTGGTGGAGGAAACAAGGCCATCACCCAAGCACCGCCG
CACTAAAAGCTTTCTAGACCAT

BS17965.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RE 390 CG12210-PE 1..390 17..406 1935 99.7 Plus
Syb-RA 390 CG12210-PA 1..390 17..406 1935 99.7 Plus
Syb-RC 459 CG12210-PC 117..459 64..406 1700 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RE 814 CG12210-RE 109..509 17..417 1945 99 Plus
Syb-RA 852 CG12210-RA 147..547 17..417 1945 99 Plus
Syb-RC 921 CG12210-RC 263..616 64..417 1710 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10250879..10251144 329..64 1315 99.6 Minus
2R 25286936 2R 10249740..10249828 417..329 400 96.6 Minus
3L 28110227 3L 1635328..1635439 250..139 245 81.2 Minus
2R 25286936 2R 10251927..10251974 64..17 240 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:12:32 has no hits.

BS17965.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:07 Download gff for BS17965.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 1..390 17..406 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:33 Download gff for BS17965.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 139..526 17..404 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:08 Download gff for BS17965.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 147..534 17..404 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:07 Download gff for BS17965.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 134..539 12..417 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:13 Download gff for BS17965.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 147..534 17..404 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:13 Download gff for BS17965.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10249753..10249827 330..404 100 <- Minus
2R 10250879..10251144 64..329 99 <- Minus
2R 10251928..10251974 17..63 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:08 Download gff for BS17965.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6137258..6137332 330..404 100 <- Minus
arm_2R 6138384..6138649 64..329 99 <- Minus
arm_2R 6139433..6139479 17..63 100   Minus

BS17965.3prime Sequence

420 bp (420 high quality bases) assembled on 2007-05-30

> BS17965.3prime
ATGGTCTAGAAAGCTTTTAGTGCGGCGGTGCTTGGGTGATGGCCTTGTTT
CCTCCACCACTGCCGCTGTCACTACTAGACGGCCAAACGGACACCAGAAC
GATGATGAGCAGCACAACGGCTATCACGCCCAGGATGATCATCATCTTCA
TGTTGGCCCACCATTGCTTGCGCTTCAGCTTGCCGGCCTGCTGCTCGAAC
TGGGATGCTCCCTGCTCCAGCTGATCCGCACGCTCGCCCAGTTCCGATAG
CTTCTGGTCCCGCTCCAGGACCTTCTCCACGTTCACACGCATAATCCCGA
CCACCTCGTCCACCTTGGCTTGGGTCTGCTGCAGCTTCTTCTGGGCTGCA
TTGTTGTTCTCGTTGTTGTTGGATCCCGAGGGGGAGGGGGCTTCGTTGTT
CTCCATGTCGACTGATAACT

BS17965.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12210-PA 390 Syb-RA 1..390 406..17 1925 99.7 Minus
CG12210-PB 399 Syb-RB 117..386 359..90 1325 99.6 Minus
CG12210-PB 399 Syb-RB 1..47 406..360 235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RE 814 CG12210-RE 109..509 406..6 1945 99 Minus
Syb-RA 852 CG12210-RA 147..547 406..6 1945 99 Minus
Syb-RC 921 CG12210-RC 263..616 359..6 1710 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10250879..10251144 94..359 1315 99.6 Plus
2R 25286936 2R 10249740..10249828 6..94 400 96.6 Plus
3L 28110227 3L 1635328..1635439 173..284 245 81.2 Plus
2R 25286936 2R 10251927..10251974 359..406 240 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:48:24 has no hits.

BS17965.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:53:56 Download gff for BS17965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12210-PA 1..390 17..406 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:50 Download gff for BS17965.3prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 142..547 6..411 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:22:56 Download gff for BS17965.3prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 142..547 6..411 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:22:56 Download gff for BS17965.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10249740..10249827 6..93 96 <- Plus
2R 10250879..10251144 94..359 99 <- Plus
2R 10251928..10251979 360..411 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:50 Download gff for BS17965.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6137245..6137332 6..93 96 <- Plus
arm_2R 6138384..6138649 94..359 99 <- Plus
arm_2R 6139433..6139484 360..411 96   Plus

BS17965.5prime Sequence

420 bp (420 high quality bases) assembled on 2007-05-30

> BS17965.5prime
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGAGAACAACAATGCAGCCCAGAAGAAGCTGCAGCAGACC
CAAGCCAAGGTGGACGAGGTGGTCGGGATTATGCGTGTGAACGTGGAGAA
GGTCCTGGAGCGGGACCAGAAGCTATCGGAACTGGGCGAGCGTGCGGATC
AGCTGGAGCAGGGAGCATCCCAGTTCGAGCAGCAGGCCGGCAAGCTGAAG
CGCAAGCAATGGTGGGCCAACATGAAGATGATGATCATCCTGGGCGTGAT
AGCCGTTGTGCTGCTCATCATCGTTCTGGTGTCCGTTTGGCCGTCTAGTA
GTGACAGCGGCAGTGGTGGAGGAAACAAGGCCATCACCCAAGCACCGCCG
CACTAAAAGCTTTCTAGACC

BS17965.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12210-PA 390 Syb-RA 1..390 17..406 1925 99.7 Plus
CG12210-PB 399 Syb-RB 117..386 64..333 1325 99.6 Plus
CG12210-PB 399 Syb-RB 1..47 17..63 235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RE 814 CG12210-RE 109..509 17..417 1945 99 Plus
Syb-RA 852 CG12210-RA 147..547 17..417 1945 99 Plus
Syb-RC 921 CG12210-RC 263..616 64..417 1710 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10250879..10251144 329..64 1315 99.6 Minus
2R 25286936 2R 10249740..10249828 417..329 400 96.6 Minus
3L 28110227 3L 1635328..1635439 250..139 245 81.2 Minus
2R 25286936 2R 10251927..10251974 64..17 240 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:00:31 has no hits.

BS17965.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:54:00 Download gff for BS17965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12210-PA 1..390 17..406 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:44:59 Download gff for BS17965.5prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 142..547 12..417 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:28 Download gff for BS17965.5prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 142..547 12..417 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:28 Download gff for BS17965.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10249740..10249827 330..417 96 <- Minus
2R 10250879..10251144 64..329 99 <- Minus
2R 10251928..10251979 12..63 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:44:59 Download gff for BS17965.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6137245..6137332 330..417 96 <- Minus
arm_2R 6138384..6138649 64..329 99 <- Minus
arm_2R 6139433..6139484 12..63 96   Minus

BS17965.pep Sequence

Translation from 16 to 405

> BS17965.pep
MENNEAPSPSGSNNNENNNAAQKKLQQTQAKVDEVVGIMRVNVEKVLERD
QKLSELGERADQLEQGASQFEQQAGKLKRKQWWANMKMMIILGVIAVVLL
IIVLVSVWPSSSDSGSGGGNKAITQAPPH*

BS17965.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-PE 129 CG12210-PE 1..129 1..129 651 100 Plus
Syb-PA 129 CG12210-PA 1..129 1..129 651 100 Plus
Syb-PC 152 CG12210-PC 1..152 1..129 614 84.2 Plus
Syb-PD 109 CG12210-PD 1..108 1..108 526 98.1 Plus
Syb-PB 132 CG12210-PB 1..131 1..108 489 80.2 Plus