Clone BS17968 Report

Search the DGRC for BS17968

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:179
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptSp7-RD
Protein status:BS17968.pep: full length peptide match
Sequenced Size:542

Clone Sequence Records

BS17968.complete Sequence

542 bp assembled on 2010-02-09

GenBank Submission: KX801620

> BS17968.complete
GAAGTTATCAGTCGACATGAAATCAACACGCAAAGTAGTTGGGATTTTTT
TGGCCACCTGCCTGCTGCCTTTCACCGTTCTACAAAATGTTGCGGCACAA
GGAAGTTGTAGGAATCCCAACCAGAAACAGGGACAATGTTTGTCCATATA
CGACTGTCAAAGTCTGCTTTCCGTGATTCAGCAGTCTTATGTCAGCCCGG
AGGACAGAACCTTTCTTCGAAACTCACAGTGCCTCGATGGAGTAGGTCGC
CAGCCATATGTTTGCTGTACAAGTGATCGCAGCTTTGGATCCCAGGAGGC
CACCTCCGCAGCCCCTCCTCCAACGACTACCAGTTCAAGTTCACGAGGTC
AAGACGGTCAAGCGGGTCTGGGCAACCTGCTGCCCTCGCCACCCAAGTGC
GGGCCCCACTCCTTCAGCAATAAGGTCTATAATGGCAACGACACTGCTAT
TGACGAGTTCAACTGGATGGCACTGCTTGAGTACGTGGATAGGGACGGCG
GGAACTCAGTTGCGGTGGCAGTTTGAAAGCTTTCTAGACCAT

BS17968.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-RF 1176 CG3066-PF 1..514 17..526 2475 99.2 Plus
Sp7-RE 1176 CG3066-PE 1..514 17..526 2475 99.2 Plus
Sp7-RA 1176 CG3066-PA 1..514 17..526 2475 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-RF 1565 CG3066-RF 156..669 17..526 2475 99.2 Plus
Sp7-RE 1418 CG3066-RE 156..669 17..526 2475 99.2 Plus
Sp7-RA 1851 CG3066-RA 589..1102 17..526 2475 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7762007..7762394 105..492 1940 100 Plus
3R 32079331 3R 7761187..7761276 17..106 450 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:12:37 has no hits.

BS17968.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:08 Download gff for BS17968.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RD 1..510 17..526 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:35 Download gff for BS17968.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RD 567..1075 17..525 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:10 Download gff for BS17968.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 589..1101 17..525 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:08 Download gff for BS17968.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RD 561..1076 9..526 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:15 Download gff for BS17968.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 589..1101 17..525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:15 Download gff for BS17968.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7761187..7761274 17..104 100 -> Plus
3R 7762007..7762393 105..491 100 -> Plus
3R 7762461..7762494 492..525 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:10 Download gff for BS17968.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3586909..3586996 17..104 100 -> Plus
arm_3R 3587729..3588115 105..491 100 -> Plus
arm_3R 3588183..3588216 492..525 100   Plus

BS17968.3prime Sequence

540 bp (540 high quality bases) assembled on 2007-05-30

> BS17968.3prime
ATGGTCTAGAAAGCTTTCAACCTTCCACCGCAACTGAGTTCCCGCCGTCC
CTATCCACGTACTCAAGCAGTGCCATCCAGTTGAACTCGTCAATAGCAGT
GTCGTTGCCATTATAGACCTTATTGCTGAAGGAGTGGGGCCCGCACTTGG
GTGGCGAGGGCAGCAGGTTGCCCAGACCCGCTTGACCGTCTTGACCTCGT
GAACTTGAACTGGTAGTCGTTGGAGGAGGGGCTGCGGAGGTGGCCTCCTG
GGATCCAAAGCTGCGATCACTTGTACAGCAAACATATGGCTGGCGACCTA
CTCCATCGAGGCACTGTGAGTTTCGAAGAAAGGTTCTGTCCTCCGGGCTG
ACATAAGACTGCTGAATCACGGAAAGCAGACTTTGACAGTCGTATATGGA
CAAACATTGTCCCTGTTTCTGGTTGGGATTCCTACAACTTCCTTGTGCCG
CAACATTTTGTAGAACGGTGAAAGGCAGCAGGCAGGTGGCCAAAAAAATC
CCAACTACTTTGCGTGTTGATTTCATGTCGACTGATAACT

BS17968.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3066-PD 510 CG3066-RD 1..502 526..25 2510 100 Minus
CG3066-PA 1176 CG3066-RA 1..475 526..52 2375 100 Minus
CG3066-PC 1176 CG3066-RC 1..475 526..52 2375 100 Minus
CG3066-PA 1176 CG3066-RA 480..506 51..25 135 100 Minus
CG3066-PC 1176 CG3066-RC 480..506 51..25 135 100 Minus
CG3066-PB 726 CG3066-RB 30..56 51..25 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-RF 1565 CG3066-RF 156..669 526..17 2470 98.8 Minus
Sp7-RE 1418 CG3066-RE 156..669 526..17 2470 98.8 Minus
Sp7-RA 1851 CG3066-RA 589..1102 526..17 2470 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7762007..7762394 438..51 1940 100 Minus
3R 32079331 3R 7761187..7761276 526..437 450 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:15:32 has no hits.

BS17968.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:54:21 Download gff for BS17968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3066-PD 1..510 17..526 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:35 Download gff for BS17968.3prime
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 583..1102 17..534 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:24 Download gff for BS17968.3prime
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 583..1102 17..534 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:24 Download gff for BS17968.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7761181..7761274 439..534 95 -> Minus
3R 7762007..7762393 52..438 100 -> Minus
3R 7762461..7762495 17..51 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:35 Download gff for BS17968.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3586903..3586996 439..534 95 -> Minus
arm_3R 3587729..3588115 52..438 100 -> Minus
arm_3R 3588183..3588217 17..51 94   Minus

BS17968.5prime Sequence

540 bp (540 high quality bases) assembled on 2007-05-30

> BS17968.5prime
GAAGTTATCACTCGACATGAAATCAACACGCAAAGTAGTTGGGATTTTTT
TGGCCACCTGCCTGCTGCCTTTCACCGTTCTACAAAATGTTGCGGCACAA
GGAAGTTGTAGGAATCCCAACCAGAAACAGGGACAATGTTTGTCCATATA
CGACTGTCAAAGTCTGCTTTCCGTGATTCAGCAGTCTTATGTCAGCCCGG
AGGACAGAACCTTTCTTCGAAACTCACAGTGCCTCGATGGAGTAGGTCGC
CAGCCATATGTTTGCTGTACAAGTGATCGCAGCTTTGGATCCCAGGAGGC
CACCTCCGCAGCCCCTCCTCCAACGACTACCAGTTCAAGTTCACGAGGTC
AAGACGGTCAAGCGGGTCTGGGCAACCTGCTGCCCTCGCCACCCAAGTGC
GGGCCCCACTCCTTCAGCAATAAGGTCTATAATGGCAACGACACTGCTAT
TGACGAGTTCAACTGGATGGCACTGCTTGAGTACGTGGATAGGGACGGCG
GGAACTCAGTTGCGGTGGCAGTTTGAAAGCTTTCTAGACC

BS17968.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3066-PD 510 CG3066-RD 1..510 17..526 2550 100 Plus
CG3066-PA 1176 CG3066-RA 1..475 17..491 2375 100 Plus
CG3066-PC 1176 CG3066-RC 1..475 17..491 2375 100 Plus
CG3066-PA 1176 CG3066-RA 480..514 492..526 175 100 Plus
CG3066-PC 1176 CG3066-RC 480..514 492..526 175 100 Plus
CG3066-PB 726 CG3066-RB 30..64 492..526 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-RF 1565 CG3066-RF 156..669 17..526 2500 99.2 Plus
Sp7-RE 1418 CG3066-RE 156..669 17..526 2500 99.2 Plus
Sp7-RA 1851 CG3066-RA 589..1102 17..526 2500 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7762007..7762394 105..492 1940 100 Plus
3R 32079331 3R 7761187..7761276 17..106 450 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:07:51 has no hits.

BS17968.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:54:35 Download gff for BS17968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3066-PD 1..510 17..526 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:11:43 Download gff for BS17968.5prime
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 589..1102 17..526 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:11 Download gff for BS17968.5prime
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 589..1102 17..526 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:11 Download gff for BS17968.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7761187..7761274 17..104 100 -> Plus
3R 7762007..7762393 105..491 100 -> Plus
3R 7762461..7762495 492..526 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:11:43 Download gff for BS17968.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3586909..3586996 17..104 100 -> Plus
arm_3R 3587729..3588115 105..491 100 -> Plus
arm_3R 3588183..3588217 492..526 100   Plus

BS17968.pep Sequence

Translation from 16 to 525

> BS17968.pep
MKSTRKVVGIFLATCLLPFTVLQNVAAQGSCRNPNQKQGQCLSIYDCQSL
LSVIQQSYVSPEDRTFLRNSQCLDGVGRQPYVCCTSDRSFGSQEATSAAP
PPTTTSSSSRGQDGQAGLGNLLPSPPKCGPHSFSNKVYNGNDTAIDEFNW
MALLEYVDRDGGNSVAVAV*

BS17968.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-PF 391 CG3066-PF 1..161 1..161 846 98.8 Plus
Sp7-PE 391 CG3066-PE 1..161 1..161 846 98.8 Plus
Sp7-PA 391 CG3066-PA 1..161 1..161 846 98.8 Plus
CG9733-PB 417 CG9733-PB 3..193 10..168 260 33.5 Plus
CG9733-PA 418 CG9733-PA 25..194 31..168 255 35.2 Plus