Clone Sequence Records
BS17968.complete Sequence
542 bp assembled on 2010-02-09
GenBank Submission: KX801620
> BS17968.complete
GAAGTTATCAGTCGACATGAAATCAACACGCAAAGTAGTTGGGATTTTTT
TGGCCACCTGCCTGCTGCCTTTCACCGTTCTACAAAATGTTGCGGCACAA
GGAAGTTGTAGGAATCCCAACCAGAAACAGGGACAATGTTTGTCCATATA
CGACTGTCAAAGTCTGCTTTCCGTGATTCAGCAGTCTTATGTCAGCCCGG
AGGACAGAACCTTTCTTCGAAACTCACAGTGCCTCGATGGAGTAGGTCGC
CAGCCATATGTTTGCTGTACAAGTGATCGCAGCTTTGGATCCCAGGAGGC
CACCTCCGCAGCCCCTCCTCCAACGACTACCAGTTCAAGTTCACGAGGTC
AAGACGGTCAAGCGGGTCTGGGCAACCTGCTGCCCTCGCCACCCAAGTGC
GGGCCCCACTCCTTCAGCAATAAGGTCTATAATGGCAACGACACTGCTAT
TGACGAGTTCAACTGGATGGCACTGCTTGAGTACGTGGATAGGGACGGCG
GGAACTCAGTTGCGGTGGCAGTTTGAAAGCTTTCTAGACCAT
BS17968.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sp7-RF | 1176 | CG3066-PF | 1..514 | 17..526 | 2475 | 99.2 | Plus |
Sp7-RE | 1176 | CG3066-PE | 1..514 | 17..526 | 2475 | 99.2 | Plus |
Sp7-RA | 1176 | CG3066-PA | 1..514 | 17..526 | 2475 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sp7-RF | 1565 | CG3066-RF | 156..669 | 17..526 | 2475 | 99.2 | Plus |
Sp7-RE | 1418 | CG3066-RE | 156..669 | 17..526 | 2475 | 99.2 | Plus |
Sp7-RA | 1851 | CG3066-RA | 589..1102 | 17..526 | 2475 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7762007..7762394 | 105..492 | 1940 | 100 | Plus |
3R | 32079331 | 3R | 7761187..7761276 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:12:37 has no hits.
BS17968.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:08 Download gff for
BS17968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RD | 1..510 | 17..526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:35 Download gff for
BS17968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RD | 567..1075 | 17..525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:10 Download gff for
BS17968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 589..1101 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:08 Download gff for
BS17968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RD | 561..1076 | 9..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:15 Download gff for
BS17968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 589..1101 | 17..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:15 Download gff for
BS17968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7761187..7761274 | 17..104 | 100 | -> | Plus |
3R | 7762007..7762393 | 105..491 | 100 | -> | Plus |
3R | 7762461..7762494 | 492..525 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:10 Download gff for
BS17968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3586909..3586996 | 17..104 | 100 | -> | Plus |
arm_3R | 3587729..3588115 | 105..491 | 100 | -> | Plus |
arm_3R | 3588183..3588216 | 492..525 | 100 | | Plus |
BS17968.3prime Sequence
540 bp (540 high quality bases) assembled on 2007-05-30
> BS17968.3prime
ATGGTCTAGAAAGCTTTCAACCTTCCACCGCAACTGAGTTCCCGCCGTCC
CTATCCACGTACTCAAGCAGTGCCATCCAGTTGAACTCGTCAATAGCAGT
GTCGTTGCCATTATAGACCTTATTGCTGAAGGAGTGGGGCCCGCACTTGG
GTGGCGAGGGCAGCAGGTTGCCCAGACCCGCTTGACCGTCTTGACCTCGT
GAACTTGAACTGGTAGTCGTTGGAGGAGGGGCTGCGGAGGTGGCCTCCTG
GGATCCAAAGCTGCGATCACTTGTACAGCAAACATATGGCTGGCGACCTA
CTCCATCGAGGCACTGTGAGTTTCGAAGAAAGGTTCTGTCCTCCGGGCTG
ACATAAGACTGCTGAATCACGGAAAGCAGACTTTGACAGTCGTATATGGA
CAAACATTGTCCCTGTTTCTGGTTGGGATTCCTACAACTTCCTTGTGCCG
CAACATTTTGTAGAACGGTGAAAGGCAGCAGGCAGGTGGCCAAAAAAATC
CCAACTACTTTGCGTGTTGATTTCATGTCGACTGATAACT
BS17968.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3066-PD | 510 | CG3066-RD | 1..502 | 526..25 | 2510 | 100 | Minus |
CG3066-PA | 1176 | CG3066-RA | 1..475 | 526..52 | 2375 | 100 | Minus |
CG3066-PC | 1176 | CG3066-RC | 1..475 | 526..52 | 2375 | 100 | Minus |
CG3066-PA | 1176 | CG3066-RA | 480..506 | 51..25 | 135 | 100 | Minus |
CG3066-PC | 1176 | CG3066-RC | 480..506 | 51..25 | 135 | 100 | Minus |
CG3066-PB | 726 | CG3066-RB | 30..56 | 51..25 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sp7-RF | 1565 | CG3066-RF | 156..669 | 526..17 | 2470 | 98.8 | Minus |
Sp7-RE | 1418 | CG3066-RE | 156..669 | 526..17 | 2470 | 98.8 | Minus |
Sp7-RA | 1851 | CG3066-RA | 589..1102 | 526..17 | 2470 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7762007..7762394 | 438..51 | 1940 | 100 | Minus |
3R | 32079331 | 3R | 7761187..7761276 | 526..437 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:15:32 has no hits.
BS17968.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:54:21 Download gff for
BS17968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3066-PD | 1..510 | 17..526 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:35 Download gff for
BS17968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 583..1102 | 17..534 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:24 Download gff for
BS17968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 583..1102 | 17..534 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:24 Download gff for
BS17968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7761181..7761274 | 439..534 | 95 | -> | Minus |
3R | 7762007..7762393 | 52..438 | 100 | -> | Minus |
3R | 7762461..7762495 | 17..51 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:35 Download gff for
BS17968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3586903..3586996 | 439..534 | 95 | -> | Minus |
arm_3R | 3587729..3588115 | 52..438 | 100 | -> | Minus |
arm_3R | 3588183..3588217 | 17..51 | 94 | | Minus |
BS17968.5prime Sequence
540 bp (540 high quality bases) assembled on 2007-05-30
> BS17968.5prime
GAAGTTATCACTCGACATGAAATCAACACGCAAAGTAGTTGGGATTTTTT
TGGCCACCTGCCTGCTGCCTTTCACCGTTCTACAAAATGTTGCGGCACAA
GGAAGTTGTAGGAATCCCAACCAGAAACAGGGACAATGTTTGTCCATATA
CGACTGTCAAAGTCTGCTTTCCGTGATTCAGCAGTCTTATGTCAGCCCGG
AGGACAGAACCTTTCTTCGAAACTCACAGTGCCTCGATGGAGTAGGTCGC
CAGCCATATGTTTGCTGTACAAGTGATCGCAGCTTTGGATCCCAGGAGGC
CACCTCCGCAGCCCCTCCTCCAACGACTACCAGTTCAAGTTCACGAGGTC
AAGACGGTCAAGCGGGTCTGGGCAACCTGCTGCCCTCGCCACCCAAGTGC
GGGCCCCACTCCTTCAGCAATAAGGTCTATAATGGCAACGACACTGCTAT
TGACGAGTTCAACTGGATGGCACTGCTTGAGTACGTGGATAGGGACGGCG
GGAACTCAGTTGCGGTGGCAGTTTGAAAGCTTTCTAGACC
BS17968.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:54:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3066-PD | 510 | CG3066-RD | 1..510 | 17..526 | 2550 | 100 | Plus |
CG3066-PA | 1176 | CG3066-RA | 1..475 | 17..491 | 2375 | 100 | Plus |
CG3066-PC | 1176 | CG3066-RC | 1..475 | 17..491 | 2375 | 100 | Plus |
CG3066-PA | 1176 | CG3066-RA | 480..514 | 492..526 | 175 | 100 | Plus |
CG3066-PC | 1176 | CG3066-RC | 480..514 | 492..526 | 175 | 100 | Plus |
CG3066-PB | 726 | CG3066-RB | 30..64 | 492..526 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sp7-RF | 1565 | CG3066-RF | 156..669 | 17..526 | 2500 | 99.2 | Plus |
Sp7-RE | 1418 | CG3066-RE | 156..669 | 17..526 | 2500 | 99.2 | Plus |
Sp7-RA | 1851 | CG3066-RA | 589..1102 | 17..526 | 2500 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7762007..7762394 | 105..492 | 1940 | 100 | Plus |
3R | 32079331 | 3R | 7761187..7761276 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:07:51 has no hits.
BS17968.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:54:35 Download gff for
BS17968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3066-PD | 1..510 | 17..526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:11:43 Download gff for
BS17968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 589..1102 | 17..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:11 Download gff for
BS17968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 589..1102 | 17..526 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:11 Download gff for
BS17968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7761187..7761274 | 17..104 | 100 | -> | Plus |
3R | 7762007..7762393 | 105..491 | 100 | -> | Plus |
3R | 7762461..7762495 | 492..526 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:11:43 Download gff for
BS17968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3586909..3586996 | 17..104 | 100 | -> | Plus |
arm_3R | 3587729..3588115 | 105..491 | 100 | -> | Plus |
arm_3R | 3588183..3588217 | 492..526 | 100 | | Plus |
BS17968.pep Sequence
Translation from 16 to 525
> BS17968.pep
MKSTRKVVGIFLATCLLPFTVLQNVAAQGSCRNPNQKQGQCLSIYDCQSL
LSVIQQSYVSPEDRTFLRNSQCLDGVGRQPYVCCTSDRSFGSQEATSAAP
PPTTTSSSSRGQDGQAGLGNLLPSPPKCGPHSFSNKVYNGNDTAIDEFNW
MALLEYVDRDGGNSVAVAV*
BS17968.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sp7-PF | 391 | CG3066-PF | 1..161 | 1..161 | 846 | 98.8 | Plus |
Sp7-PE | 391 | CG3066-PE | 1..161 | 1..161 | 846 | 98.8 | Plus |
Sp7-PA | 391 | CG3066-PA | 1..161 | 1..161 | 846 | 98.8 | Plus |
CG9733-PB | 417 | CG9733-PB | 3..193 | 10..168 | 260 | 33.5 | Plus |
CG9733-PA | 418 | CG9733-PA | 25..194 | 31..168 | 255 | 35.2 | Plus |