Clone BS17974 Report

Search the DGRC for BS17974

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:179
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptFeCH-RB
Protein status:BS17974.pep: full length peptide match
Sequenced Size:713

Clone Sequence Records

BS17974.3prime Sequence

711 bp (654 high quality bases) assembled on 2007-05-30

> BS17974.3prime
ATGGTCTAGAAAGCTTTTAGTTCGAGCAGAGCTGGCGGTACCAGCTTTTG
CTCTCCCTGCACTTTGGATTGGAGCACATGGGACAACGCATGAGGAACTT
GGGGTTGACTGCCTGCTGGGACTTCAGGTGGTCTGCCACAACGTTTGTCA
GGGCGTCGATGAACAGCGGGTGGTCGTTGGGGGTTGCAGCTCGACGGATT
TCCTCTACGCCTACCTCCTTGGCCAGTTCGTCGCAGTACTCGATGTCGAG
CTCATGCAGCGTCTCGATGTGCTCGTTCACGAAGGCAATGGGCACAAGGA
TGAAGTTCTTCAGGCCTTGCTTAACATAGCCCTTAATGGCATCATCAGTT
GCGGGCGCCAGCCAGGGTAGCGGGCCCACCTTGGATTGCCATGCCAGGCT
GTAGGGATTCGTCTGACCAAGTTCCTGCATCACCATGTGTACGCTAGCAC
CAATCTCCGAGGGATACGCGTCACCCCGGTTCACAGCCTTAAGGGGAAGG
GAGTGGGCAGTGAAGAGGATGACCACATCATTTCGTTTCGTTTCCACAAA
TTTGGCCAGCTCGTCGCGAATTCGCTGGGCAAACGTTTTGATTAGAAGTG
GATGAGTGCCCCACCTGTCGATAATGCTCCATTTGATATCCGAGGGCAGA
TTACTAGAGAAGTAGAGGGGATCAAATAAATAGCTGCAATTGTGCATGTC
GACTGATAACT

BS17974.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2098-PB 681 ferrochelatase-RB 1..681 697..17 3355 99.7 Minus
CG2098-PA 1155 ferrochelatase-RA 519..1155 653..17 3185 100 Minus
CG2098-PC 846 ferrochelatase-RC 519..841 653..331 1615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-RB 1338 CG2098-RB 492..1172 697..17 3375 99.7 Minus
FeCH-RA 1407 CG2098-RA 605..1241 653..17 3185 100 Minus
FeCH-RC 1466 CG2098-RC 605..927 653..331 1615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31810999..31811365 331..697 1805 99.5 Plus
3R 32079331 3R 31810626..31810942 17..333 1585 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:38:07 has no hits.

BS17974.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:13 Download gff for BS17974.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2098-PB 1..681 17..697 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:27 Download gff for BS17974.3prime
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 489..1174 13..700 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:23 Download gff for BS17974.3prime
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 489..1174 13..700 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:23 Download gff for BS17974.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31810624..31810940 13..331 99 <- Plus
3R 31811000..31811368 332..700 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:27 Download gff for BS17974.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27636346..27636662 13..331 99 <- Plus
arm_3R 27636722..27637090 332..700 99   Plus

BS17974.5prime Sequence

711 bp (711 high quality bases) assembled on 2007-05-30

> BS17974.5prime
GAAGTTATCAGTCGACATGCACAATTGCAGCTATTTATTTGATCCCCTCT
ACCTCTTTAGTAATCTGCCCTCGGATATCAAATGGAGCATTATCGACAGG
TGGGGCACTCATCCACTTCTAATCAAAACGTTTGCCCAGCGAATTCGCGA
CGAGCTGGCCAAATTTGTGGAAACGAAACGAAATGATGTGGTCATCCTCT
TCACTGCCCACTCCCTTCCCCTTAAGGCTGTGAACCGGGGTGACGCGTAT
CCCTCGGAGATTGGTGCTAGCGTACACATGGTGATGCAGGAACTTGGTCA
GACGAATCCCTACAGCCTGGCATGGCAATCCAAGGTGGGCCCGCTACCCT
GGCTGGCGCCCGCAACTGATGATGCCATTAAGGGCTATGTTAAGCAAGGC
CTGAAGAACTTCATCCTTGTGCCCATTGCCTTCGTGAACGAGCACATCGA
GACGCTGCATGAGCTCGACATCGAGTACTGCGACGAACTGGCCAAGGAGG
TAGGCGTAGAGGAAATCCGTCGAGCTGCAACCCCCAACGACCACCCGCTG
TTCATCGACGCCCTGACAAACGTTGTGGCAGACCACCTGAAGTCCCAGCA
GGCAGTCAACCCCAAGTTCCTCATGCGTTGTCCCATGTGCTCCAATCCAA
AGTGCAGGGAGAGCAAAAGCTGGTACCGCCAGCTCTGCTCGAACTAAAAG
CTTTCTAGACC

BS17974.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2098-PB 681 ferrochelatase-RB 1..681 17..697 3405 100 Plus
CG2098-PA 1155 ferrochelatase-RA 519..1155 61..697 3185 100 Plus
CG2098-PC 846 ferrochelatase-RC 519..841 61..383 1615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-RB 1338 CG2098-RB 492..1172 17..697 3405 100 Plus
FeCH-RA 1407 CG2098-RA 605..1241 61..697 3185 100 Plus
FeCH-RC 1466 CG2098-RC 605..927 61..383 1615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31810999..31811365 383..17 1835 100 Minus
3R 32079331 3R 31810626..31810942 697..381 1585 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:56:29 has no hits.

BS17974.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:18 Download gff for BS17974.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2098-PB 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:07 Download gff for BS17974.5prime
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 489..1174 14..701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:49 Download gff for BS17974.5prime
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 489..1174 14..701 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:49 Download gff for BS17974.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31810624..31810940 383..701 99 <- Minus
3R 31811000..31811368 14..382 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:07 Download gff for BS17974.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27636346..27636662 383..701 99 <- Minus
arm_3R 27636722..27637090 14..382 99   Minus

BS17974.complete Sequence

713 bp assembled on 2010-02-09

GenBank Submission: KX803751

> BS17974.complete
GAAGTTATCAGTCGACATGCACAATTGCAGCTATTTATTTGATCCCCTCT
ACCTCTTTAGTAATCTGCCCTCGGATATCAAATGGAGCATTATCGACAGG
TGGGGCACTCATCCACTTCTAATCAAAACGTTTGCCCAGCGAATTCGCGA
CGAGCTGGCCAAATTTGTGGAAACGAAACGAAATGATGTGGTCATCCTCT
TCACTGCCCACTCCCTTCCCCTTAAGGCTGTGAACCGGGGTGACGCGTAT
CCCTCGGAGATTGGTGCTAGCGTACACATGGTGATGCAGGAACTTGGTCA
GACGAATCCCTACAGCCTGGCATGGCAATCCAAGGTGGGCCCGCTACCCT
GGCTGGCGCCCGCAACTGATGATGCCATTAAGGGCTATGTTAAGCAAGGC
CTGAAGAACTTCATCCTTGTGCCCATTGCCTTCGTGAACGAGCACATCGA
GACGCTGCATGAGCTCGACATCGAGTACTGCGACGAACTGGCCAAGGAGG
TAGGCGTAGAGGAAATCCGTCGAGCTGCAACCCCCAACGACCACCCGCTG
TTCATCGACGCCCTGACAAACGTTGTGGCAGACCACCTGAAGTCCCAGCA
GGCAGTCAACCCCAAGTTCCTCATGCGTTGTCCCATGTGCTCCAATCCAA
AGTGCAGGGAGAGCAAAAGCTGGTACCGCCAGCTCTGCTCGAACTAAAAG
CTTTCTAGACCAT

BS17974.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-RB 681 CG2098-PB 1..681 17..697 3405 100 Plus
FeCH-RA 1155 CG2098-PA 519..1155 61..697 3185 100 Plus
FeCH-RC 846 CG2098-PC 519..841 61..383 1615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-RB 1338 CG2098-RB 492..1172 17..697 3405 100 Plus
FeCH-RA 1407 CG2098-RA 605..1241 61..697 3185 100 Plus
FeCH-RC 1466 CG2098-RC 605..927 61..383 1615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31810999..31811365 383..17 1835 100 Minus
3R 32079331 3R 31810626..31810942 697..381 1585 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:36:34 has no hits.

BS17974.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:35 Download gff for BS17974.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RB 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:28 Download gff for BS17974.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RB 492..1170 17..695 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:23 Download gff for BS17974.complete
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 492..1170 17..695 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:35 Download gff for BS17974.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RB 489..1174 14..701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:48 Download gff for BS17974.complete
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 492..1170 17..695 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:48 Download gff for BS17974.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31810628..31810940 383..695 100 <- Minus
3R 31811000..31811365 17..382 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:23 Download gff for BS17974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27636350..27636662 383..695 100 <- Minus
arm_3R 27636722..27637087 17..382 100   Minus

BS17974.pep Sequence

Translation from 16 to 696

> BS17974.pep
MHNCSYLFDPLYLFSNLPSDIKWSIIDRWGTHPLLIKTFAQRIRDELAKF
VETKRNDVVILFTAHSLPLKAVNRGDAYPSEIGASVHMVMQELGQTNPYS
LAWQSKVGPLPWLAPATDDAIKGYVKQGLKNFILVPIAFVNEHIETLHEL
DIEYCDELAKEVGVEEIRRAATPNDHPLFIDALTNVVADHLKSQQAVNPK
FLMRCPMCSNPKCRESKSWYRQLCSN*

BS17974.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-PB 226 CG2098-PB 1..226 1..226 1210 100 Plus
FeCH-PA 384 CG2098-PA 170..384 12..226 1127 98.6 Plus
FeCH-PC 281 CG2098-PC 170..280 12..122 568 97.3 Plus