Clone BS17975 Report

Search the DGRC for BS17975

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:179
Well:75
Vector:pDNR-Dual
Associated Gene/Transcriptescl-RA
Protein status:BS17975.pep: full length peptide match
Sequenced Size:1421

Clone Sequence Records

BS17975.complete Sequence

1421 bp assembled on 2009-12-07

GenBank Submission: KX802347

> BS17975.complete
GAAGTTATCAGTCGACATGACCGAAACGAATCCCAGTGAAATATCTCCTC
CGAGCGAAGAGCCACCGGCAGAGGACGAATCCACTGACCACTCTCCAGCG
GAGGCAGTGCTGAGCAATAATTCCTCGAGTGTCTGCAATGTTGTGGAGCC
GGATGATGAGCACGAAGTTAATTCCGTGGATCGGGAGGACACCGCCAGTT
TGTTCAGCACTACTACGACCACCACCAGAAGCAAATCGCCAAATACACGA
AAATTGAACCGCCTGTGTCGGCGGATCAAGGCACCCAAAATGGTTCAGCC
CTTGTACAAATATAGCTCCCATGTCCGCGAGGACCACAACCATCAGATCT
TCGGAGTGCAGTTCAATCCGTTCCTGGACAGAGGCCAGCCGCAGGTGTTC
GCCACCGTTGGCAAGGATCGGGTTTCCATTTATGAGTGCGAGAGGAGCAC
CGGACAGGAGTCCTGCGAAGGCATTCGACTGCTGCAAGTCTACGCAGACC
CAGATACCGATGAAAGTTTCTACACATGCGCTTGGTCCTACGACTCTGTG
ACCGGCGATCCTGTGCTTGCCGCGGCTGGTTACCGCGGCGTCATTCGCAT
ATTCAATCCGGTTAAGCACCAGTGCAGCAAAAACTACATTGGTCACGGGC
ACGCCATTAACGAGCTGAAGTTTCATCCGACTAGACCGCAGTTACTTCTG
TCCGGCAGCAAGGATCACTCCCTGCGCCTTTGGAACATTCAGTCGGACGT
GTGTGTGGCGGTTTTCGGCGGCGTAGAAGGACACCGCGACGAAGTGTTGT
CTGTGGACTTTGATTTGCGCGGTGATCGCATCATGTCCAGTGGAATGGAT
CACTCACTGAAGCTCTGGCGACTGGATAAGCCCGATATAAAAGAGGCCAT
CGAGCTGAGCTCTGGTTTTAGTCCCAACAAGAATACGGGTCCGTTTCCCA
CGATCAAGGAGCACTTTCCGGACTTCTCGACAAGGGATATACATCGAAAT
TATGTGGATTGCGTTCAGTGGTTCGGCGACTTTGTCTTTTCGAAATCCTG
CGAGAACTCAATTGTTTGCTGGAAGCCGGGCAAACTTTCAGAATCGTGGC
ATGAGATTAAGCCACAGGAGTCGGCCACCACGGTGCTGCATCACTTTGAC
TACAAGATGTGCGAGATCTGGTTCGTACGCTTCGCCTTCAACGCCTGGCA
AAAGATTCTGGCCTTGGGCAATCAACTGGGCACAACATTTGTCTGGGAAT
TGGACTGCAATGATCCCAATTTAACAAAGTGTAGCCAGCTGGTTCATCCC
AAAAGCAACTCCACCATCCGACAGACTTCCTTCTCCAAAGACGGTTCCAT
TTTAGTTTGCGTGTGCGACGACAGCACCGTGTGGCGATGGGATCGCGTCA
ATTAGAAGCTTTCTAGACCAT

BS17975.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
escl-RC 1389 CG5202-PC 1..1389 17..1405 6945 100 Plus
escl-RA 1389 CG5202-PA 1..1389 17..1405 6945 100 Plus
Qtzl-RC 372 CG31864-PC 275..372 1166..1263 490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
escl-RC 1532 CG5202-RC 47..1435 17..1405 6945 100 Plus
escl-RA 1809 CG5202-RA 47..1435 17..1405 6945 100 Plus
Qtzl-RC 926 CG31864-RC 349..588 1166..1405 1200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11991575..11992474 506..1405 4500 100 Plus
2L 23513712 2L 11990973..11991271 17..315 1495 100 Plus
2L 23513712 2L 11996146..11996385 1166..1405 1200 100 Plus
2L 23513712 2L 11991328..11991519 314..505 960 100 Plus
2L 23513712 2L 11827797..11828245 1080..632 310 71.3 Minus
Blast to na_te.dros performed on 2014-11-28 01:46:59 has no hits.

BS17975.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:36 Download gff for BS17975.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 1..1389 17..1405 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:35 Download gff for BS17975.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 47..1435 17..1405 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:35 Download gff for BS17975.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 47..1435 17..1405 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:37 Download gff for BS17975.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 42..1435 9..1405 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:40 Download gff for BS17975.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 47..1435 17..1405 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:40 Download gff for BS17975.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11990973..11991271 17..315 100 -> Plus
2L 11991330..11991519 316..505 100 -> Plus
2L 11991575..11992474 506..1405 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:35 Download gff for BS17975.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11990973..11991271 17..315 100 -> Plus
arm_2L 11991330..11991519 316..505 100 -> Plus
arm_2L 11991575..11992474 506..1405 100   Plus

BS17975.3prime Sequence

843 bp (829 high quality bases) assembled on 2007-05-30

> BS17975.3prime
ATGGTCTAGAAAGCTTCTAATTGACGCGATCCCATCGCCACACGGTGCTG
TCGTCGCACACGCAAACTAAAATGGAACCGTCTTTGGAGAAGGAAGTCTG
TCGGATGGTGGAGTTGCTTTTGGGATGAACCAGCTGGCTACACTTTGTTA
AATTGGGATCATTGCAGTCCAATTCCCAGACAAATGTTGTGCCCAGTTGA
TTGCCCAAGGCCAGAATCTTTTGCCAGGCGTTGAAGGCGAAGCGTACGAA
CCAGATCTCGCACATCTTGTAGTCAAAGTGATGCAGCACCGTGGTGGCCG
ACTCCTGTGGCTTAATCTCATGCCACGATTCTGAAAGTTTGCCCGGCTTC
CAGCAAACAATTGAGTTCTCGCAGGATTTCGAAAAGACAAAGTCGCCGAA
CCACTGAACGCAATCCACATAATTTCGATGTATATCCCTTGTCGAGAAGT
CCGGAAAGTGCTCCTTGATCGTGGGAAACGGACCCGTATTCTTGTTGGGA
CTAAAACCAGAGCTCAGCTCGATGGCCTCTTTTATATCGGGCTTATCCAG
TCGCCAGAGCTTCAGTGAGTGATCCATTCCACTGGACATGATGCGATCAC
CGCGCAAATCAAAGTCCACAGACAACACTTCGTCGCGGTGTCCTTCTACG
CCGCCGAAAACCGCCACACACACGTCCGACTGAATGTTCCAAAGGCGCAG
GGAGTGATCCTTGCTGCCGGACAGAAGTAACTGCGGTCTAGTCGGATGAA
ACTTCAGCTCGTTAATGGCGTGCCCGTGACCAATGTAGTTTTTGCTGCAC
TGGTGCTTAACCGGATTGAATATGCAAATGACGCCGCGGTAAC

BS17975.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5202-PA 1389 escl-RA 563..1389 843..17 4110 99.8 Minus
CG31864-PA 372 CG31864-RA 275..372 256..159 490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
escl-RC 1532 CG5202-RC 609..1435 843..17 4120 99.9 Minus
escl-RA 1809 CG5202-RA 609..1435 843..17 4120 99.9 Minus
Qtzl-RC 926 CG31864-RC 349..588 256..17 1200 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11991648..11992474 843..17 4120 99.9 Minus
2L 23513712 2L 11996146..11996385 256..17 1200 100 Minus
2L 23513712 2L 11827797..11828245 342..790 310 71.3 Plus
Blast to na_te.dros performed on 2015-02-10 16:31:21 has no hits.

BS17975.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:22 Download gff for BS17975.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5202-PA 563..1389 17..843 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:48 Download gff for BS17975.3prime
Subject Subject Range Query Range Percent Splice Strand
escl-RA 609..1435 17..843 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:08 Download gff for BS17975.3prime
Subject Subject Range Query Range Percent Splice Strand
escl-RA 609..1435 17..843 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:08 Download gff for BS17975.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11991648..11992474 17..843 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:48 Download gff for BS17975.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11991648..11992474 17..843 99   Minus

BS17975.5prime Sequence

882 bp (773 high quality bases) assembled on 2007-05-30

> BS17975.5prime
GAAGTTATCAGTCGACATGACCGAAACGAATCCCAGTGAAATATCTCCTC
CGAGCGAAGAGCCACCGGCAGAGGACGAATCCACTGACCACTCTCCAGCG
GAGGCAGTGCTGAGCAATAATTCCTCGAGTGTCTGCAATGTTGTGGAGCC
GGATGATGAGCACGAAGTTAATTCCGTGGATCGGGAGGACACCGCCAGTT
TGTTCAGCACTACTACGACCACCACCAGAAGCAAATCGCCAAATACACGA
AAATTGAACCGCCTGTGTCGGCGGATCAAGGCACCCAAAATGGTTCAGCC
CTTGTACAAATATAGCTCCCATGTCCGCGAGGACCACAACCATCAGATCT
TCGGAGTGCAGTTCAATCCGTTCCTGGACAGAGGCCAGCCGCAGGTGTTC
GCCACCGTTGGCAAGGATCGGGTTTCCATTTATGAGTGCGAGAGGAGCAC
CGGACAGGAGTCCTGCGAAGGCATTCGACTGCTGCAAGTCTACGCAGACC
CAGATACCGATGAAAGTTTCTACACATGCGCTTGGTCCTACGACTCTGTG
ACCGGCGATCCTGTGCTTGCCGCGGCTGGTTACCGCGGCGTCATTCGCAT
ATTCAATCCGGTTAAGCACCAGTGCAGCAAAAACTACATTGGTCACGGGC
ACGCCATTAACGAGCTGAAGTTTCATCCGACTAGACCGCAGTTACTTCTG
TCCGGCAGCAAGGATCACTCCCTGCGCCTTTGGAACATTCAGTCGGACGT
GTGTGTGGCGGTTTTCGGCGGCGTAGAAGGACACCGCGACGAAGTGTTGT
CTGTGGACTTTGATTTGCGCGGTGATCGCATCATGTCCAGTGGAATGGAT
CACTCACTGAAGCTCTGGCGACTGGATAAGCC

BS17975.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5202-PA 1389 escl-RA 1..866 17..882 4330 100 Plus
CG5202-PB 552 escl-RB 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
escl-RC 1532 CG5202-RC 47..912 17..882 4330 100 Plus
escl-RA 1809 CG5202-RA 47..912 17..882 4330 100 Plus
esc-RA 1704 CG14941-RA 663..913 632..882 295 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11991575..11991951 506..882 1885 100 Plus
2L 23513712 2L 11990973..11991271 17..315 1495 100 Plus
2L 23513712 2L 11991328..11991519 314..505 960 100 Plus
2L 23513712 2L 11827995..11828245 882..632 280 74.1 Minus
Blast to na_te.dros performed on 2015-02-12 04:59:26 has no hits.

BS17975.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:26 Download gff for BS17975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5202-PA 1..866 17..882 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:11 Download gff for BS17975.5prime
Subject Subject Range Query Range Percent Splice Strand
escl-RA 42..912 9..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:48 Download gff for BS17975.5prime
Subject Subject Range Query Range Percent Splice Strand
escl-RA 42..912 9..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:48 Download gff for BS17975.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11991575..11991951 506..882 100   Plus
2L 11990968..11991271 9..315 98 -> Plus
2L 11991330..11991519 316..505 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:11 Download gff for BS17975.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11990968..11991271 9..315 98 -> Plus
arm_2L 11991330..11991519 316..505 100 -> Plus
arm_2L 11991575..11991951 506..882 100   Plus

BS17975.pep Sequence

Translation from 16 to 1404

> BS17975.pep
MTETNPSEISPPSEEPPAEDESTDHSPAEAVLSNNSSSVCNVVEPDDEHE
VNSVDREDTASLFSTTTTTTRSKSPNTRKLNRLCRRIKAPKMVQPLYKYS
SHVREDHNHQIFGVQFNPFLDRGQPQVFATVGKDRVSIYECERSTGQESC
EGIRLLQVYADPDTDESFYTCAWSYDSVTGDPVLAAAGYRGVIRIFNPVK
HQCSKNYIGHGHAINELKFHPTRPQLLLSGSKDHSLRLWNIQSDVCVAVF
GGVEGHRDEVLSVDFDLRGDRIMSSGMDHSLKLWRLDKPDIKEAIELSSG
FSPNKNTGPFPTIKEHFPDFSTRDIHRNYVDCVQWFGDFVFSKSCENSIV
CWKPGKLSESWHEIKPQESATTVLHHFDYKMCEIWFVRFAFNAWQKILAL
GNQLGTTFVWELDCNDPNLTKCSQLVHPKSNSTIRQTSFSKDGSILVCVC
DDSTVWRWDRVN*

BS17975.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
escl-PC 462 CG5202-PC 1..462 1..462 2513 100 Plus
escl-PA 462 CG5202-PA 1..462 1..462 2513 100 Plus
esc-PA 425 CG14941-PA 2..419 35..460 1356 58.4 Plus