Clone Sequence Records
BS17975.complete Sequence
1421 bp assembled on 2009-12-07
GenBank Submission: KX802347
> BS17975.complete
GAAGTTATCAGTCGACATGACCGAAACGAATCCCAGTGAAATATCTCCTC
CGAGCGAAGAGCCACCGGCAGAGGACGAATCCACTGACCACTCTCCAGCG
GAGGCAGTGCTGAGCAATAATTCCTCGAGTGTCTGCAATGTTGTGGAGCC
GGATGATGAGCACGAAGTTAATTCCGTGGATCGGGAGGACACCGCCAGTT
TGTTCAGCACTACTACGACCACCACCAGAAGCAAATCGCCAAATACACGA
AAATTGAACCGCCTGTGTCGGCGGATCAAGGCACCCAAAATGGTTCAGCC
CTTGTACAAATATAGCTCCCATGTCCGCGAGGACCACAACCATCAGATCT
TCGGAGTGCAGTTCAATCCGTTCCTGGACAGAGGCCAGCCGCAGGTGTTC
GCCACCGTTGGCAAGGATCGGGTTTCCATTTATGAGTGCGAGAGGAGCAC
CGGACAGGAGTCCTGCGAAGGCATTCGACTGCTGCAAGTCTACGCAGACC
CAGATACCGATGAAAGTTTCTACACATGCGCTTGGTCCTACGACTCTGTG
ACCGGCGATCCTGTGCTTGCCGCGGCTGGTTACCGCGGCGTCATTCGCAT
ATTCAATCCGGTTAAGCACCAGTGCAGCAAAAACTACATTGGTCACGGGC
ACGCCATTAACGAGCTGAAGTTTCATCCGACTAGACCGCAGTTACTTCTG
TCCGGCAGCAAGGATCACTCCCTGCGCCTTTGGAACATTCAGTCGGACGT
GTGTGTGGCGGTTTTCGGCGGCGTAGAAGGACACCGCGACGAAGTGTTGT
CTGTGGACTTTGATTTGCGCGGTGATCGCATCATGTCCAGTGGAATGGAT
CACTCACTGAAGCTCTGGCGACTGGATAAGCCCGATATAAAAGAGGCCAT
CGAGCTGAGCTCTGGTTTTAGTCCCAACAAGAATACGGGTCCGTTTCCCA
CGATCAAGGAGCACTTTCCGGACTTCTCGACAAGGGATATACATCGAAAT
TATGTGGATTGCGTTCAGTGGTTCGGCGACTTTGTCTTTTCGAAATCCTG
CGAGAACTCAATTGTTTGCTGGAAGCCGGGCAAACTTTCAGAATCGTGGC
ATGAGATTAAGCCACAGGAGTCGGCCACCACGGTGCTGCATCACTTTGAC
TACAAGATGTGCGAGATCTGGTTCGTACGCTTCGCCTTCAACGCCTGGCA
AAAGATTCTGGCCTTGGGCAATCAACTGGGCACAACATTTGTCTGGGAAT
TGGACTGCAATGATCCCAATTTAACAAAGTGTAGCCAGCTGGTTCATCCC
AAAAGCAACTCCACCATCCGACAGACTTCCTTCTCCAAAGACGGTTCCAT
TTTAGTTTGCGTGTGCGACGACAGCACCGTGTGGCGATGGGATCGCGTCA
ATTAGAAGCTTTCTAGACCAT
BS17975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
escl-RC | 1389 | CG5202-PC | 1..1389 | 17..1405 | 6945 | 100 | Plus |
escl-RA | 1389 | CG5202-PA | 1..1389 | 17..1405 | 6945 | 100 | Plus |
Qtzl-RC | 372 | CG31864-PC | 275..372 | 1166..1263 | 490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
escl-RC | 1532 | CG5202-RC | 47..1435 | 17..1405 | 6945 | 100 | Plus |
escl-RA | 1809 | CG5202-RA | 47..1435 | 17..1405 | 6945 | 100 | Plus |
Qtzl-RC | 926 | CG31864-RC | 349..588 | 1166..1405 | 1200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11991575..11992474 | 506..1405 | 4500 | 100 | Plus |
2L | 23513712 | 2L | 11990973..11991271 | 17..315 | 1495 | 100 | Plus |
2L | 23513712 | 2L | 11996146..11996385 | 1166..1405 | 1200 | 100 | Plus |
2L | 23513712 | 2L | 11991328..11991519 | 314..505 | 960 | 100 | Plus |
2L | 23513712 | 2L | 11827797..11828245 | 1080..632 | 310 | 71.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:46:59 has no hits.
BS17975.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:36 Download gff for
BS17975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 1..1389 | 17..1405 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:35 Download gff for
BS17975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 47..1435 | 17..1405 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:35 Download gff for
BS17975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 47..1435 | 17..1405 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:37 Download gff for
BS17975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 42..1435 | 9..1405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:40 Download gff for
BS17975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 47..1435 | 17..1405 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:40 Download gff for
BS17975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11990973..11991271 | 17..315 | 100 | -> | Plus |
2L | 11991330..11991519 | 316..505 | 100 | -> | Plus |
2L | 11991575..11992474 | 506..1405 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:35 Download gff for
BS17975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11990973..11991271 | 17..315 | 100 | -> | Plus |
arm_2L | 11991330..11991519 | 316..505 | 100 | -> | Plus |
arm_2L | 11991575..11992474 | 506..1405 | 100 | | Plus |
BS17975.3prime Sequence
843 bp (829 high quality bases) assembled on 2007-05-30
> BS17975.3prime
ATGGTCTAGAAAGCTTCTAATTGACGCGATCCCATCGCCACACGGTGCTG
TCGTCGCACACGCAAACTAAAATGGAACCGTCTTTGGAGAAGGAAGTCTG
TCGGATGGTGGAGTTGCTTTTGGGATGAACCAGCTGGCTACACTTTGTTA
AATTGGGATCATTGCAGTCCAATTCCCAGACAAATGTTGTGCCCAGTTGA
TTGCCCAAGGCCAGAATCTTTTGCCAGGCGTTGAAGGCGAAGCGTACGAA
CCAGATCTCGCACATCTTGTAGTCAAAGTGATGCAGCACCGTGGTGGCCG
ACTCCTGTGGCTTAATCTCATGCCACGATTCTGAAAGTTTGCCCGGCTTC
CAGCAAACAATTGAGTTCTCGCAGGATTTCGAAAAGACAAAGTCGCCGAA
CCACTGAACGCAATCCACATAATTTCGATGTATATCCCTTGTCGAGAAGT
CCGGAAAGTGCTCCTTGATCGTGGGAAACGGACCCGTATTCTTGTTGGGA
CTAAAACCAGAGCTCAGCTCGATGGCCTCTTTTATATCGGGCTTATCCAG
TCGCCAGAGCTTCAGTGAGTGATCCATTCCACTGGACATGATGCGATCAC
CGCGCAAATCAAAGTCCACAGACAACACTTCGTCGCGGTGTCCTTCTACG
CCGCCGAAAACCGCCACACACACGTCCGACTGAATGTTCCAAAGGCGCAG
GGAGTGATCCTTGCTGCCGGACAGAAGTAACTGCGGTCTAGTCGGATGAA
ACTTCAGCTCGTTAATGGCGTGCCCGTGACCAATGTAGTTTTTGCTGCAC
TGGTGCTTAACCGGATTGAATATGCAAATGACGCCGCGGTAAC
BS17975.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5202-PA | 1389 | escl-RA | 563..1389 | 843..17 | 4110 | 99.8 | Minus |
CG31864-PA | 372 | CG31864-RA | 275..372 | 256..159 | 490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
escl-RC | 1532 | CG5202-RC | 609..1435 | 843..17 | 4120 | 99.9 | Minus |
escl-RA | 1809 | CG5202-RA | 609..1435 | 843..17 | 4120 | 99.9 | Minus |
Qtzl-RC | 926 | CG31864-RC | 349..588 | 256..17 | 1200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11991648..11992474 | 843..17 | 4120 | 99.9 | Minus |
2L | 23513712 | 2L | 11996146..11996385 | 256..17 | 1200 | 100 | Minus |
2L | 23513712 | 2L | 11827797..11828245 | 342..790 | 310 | 71.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:31:21 has no hits.
BS17975.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:22 Download gff for
BS17975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5202-PA | 563..1389 | 17..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:48 Download gff for
BS17975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 609..1435 | 17..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:08 Download gff for
BS17975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 609..1435 | 17..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:08 Download gff for
BS17975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11991648..11992474 | 17..843 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:48 Download gff for
BS17975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11991648..11992474 | 17..843 | 99 | | Minus |
BS17975.5prime Sequence
882 bp (773 high quality bases) assembled on 2007-05-30
> BS17975.5prime
GAAGTTATCAGTCGACATGACCGAAACGAATCCCAGTGAAATATCTCCTC
CGAGCGAAGAGCCACCGGCAGAGGACGAATCCACTGACCACTCTCCAGCG
GAGGCAGTGCTGAGCAATAATTCCTCGAGTGTCTGCAATGTTGTGGAGCC
GGATGATGAGCACGAAGTTAATTCCGTGGATCGGGAGGACACCGCCAGTT
TGTTCAGCACTACTACGACCACCACCAGAAGCAAATCGCCAAATACACGA
AAATTGAACCGCCTGTGTCGGCGGATCAAGGCACCCAAAATGGTTCAGCC
CTTGTACAAATATAGCTCCCATGTCCGCGAGGACCACAACCATCAGATCT
TCGGAGTGCAGTTCAATCCGTTCCTGGACAGAGGCCAGCCGCAGGTGTTC
GCCACCGTTGGCAAGGATCGGGTTTCCATTTATGAGTGCGAGAGGAGCAC
CGGACAGGAGTCCTGCGAAGGCATTCGACTGCTGCAAGTCTACGCAGACC
CAGATACCGATGAAAGTTTCTACACATGCGCTTGGTCCTACGACTCTGTG
ACCGGCGATCCTGTGCTTGCCGCGGCTGGTTACCGCGGCGTCATTCGCAT
ATTCAATCCGGTTAAGCACCAGTGCAGCAAAAACTACATTGGTCACGGGC
ACGCCATTAACGAGCTGAAGTTTCATCCGACTAGACCGCAGTTACTTCTG
TCCGGCAGCAAGGATCACTCCCTGCGCCTTTGGAACATTCAGTCGGACGT
GTGTGTGGCGGTTTTCGGCGGCGTAGAAGGACACCGCGACGAAGTGTTGT
CTGTGGACTTTGATTTGCGCGGTGATCGCATCATGTCCAGTGGAATGGAT
CACTCACTGAAGCTCTGGCGACTGGATAAGCC
BS17975.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5202-PA | 1389 | escl-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
CG5202-PB | 552 | escl-RB | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
escl-RC | 1532 | CG5202-RC | 47..912 | 17..882 | 4330 | 100 | Plus |
escl-RA | 1809 | CG5202-RA | 47..912 | 17..882 | 4330 | 100 | Plus |
esc-RA | 1704 | CG14941-RA | 663..913 | 632..882 | 295 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11991575..11991951 | 506..882 | 1885 | 100 | Plus |
2L | 23513712 | 2L | 11990973..11991271 | 17..315 | 1495 | 100 | Plus |
2L | 23513712 | 2L | 11991328..11991519 | 314..505 | 960 | 100 | Plus |
2L | 23513712 | 2L | 11827995..11828245 | 882..632 | 280 | 74.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:59:26 has no hits.
BS17975.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:26 Download gff for
BS17975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5202-PA | 1..866 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:11 Download gff for
BS17975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 42..912 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:48 Download gff for
BS17975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 42..912 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:48 Download gff for
BS17975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11991575..11991951 | 506..882 | 100 | | Plus |
2L | 11990968..11991271 | 9..315 | 98 | -> | Plus |
2L | 11991330..11991519 | 316..505 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:11 Download gff for
BS17975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11990968..11991271 | 9..315 | 98 | -> | Plus |
arm_2L | 11991330..11991519 | 316..505 | 100 | -> | Plus |
arm_2L | 11991575..11991951 | 506..882 | 100 | | Plus |
BS17975.pep Sequence
Translation from 16 to 1404
> BS17975.pep
MTETNPSEISPPSEEPPAEDESTDHSPAEAVLSNNSSSVCNVVEPDDEHE
VNSVDREDTASLFSTTTTTTRSKSPNTRKLNRLCRRIKAPKMVQPLYKYS
SHVREDHNHQIFGVQFNPFLDRGQPQVFATVGKDRVSIYECERSTGQESC
EGIRLLQVYADPDTDESFYTCAWSYDSVTGDPVLAAAGYRGVIRIFNPVK
HQCSKNYIGHGHAINELKFHPTRPQLLLSGSKDHSLRLWNIQSDVCVAVF
GGVEGHRDEVLSVDFDLRGDRIMSSGMDHSLKLWRLDKPDIKEAIELSSG
FSPNKNTGPFPTIKEHFPDFSTRDIHRNYVDCVQWFGDFVFSKSCENSIV
CWKPGKLSESWHEIKPQESATTVLHHFDYKMCEIWFVRFAFNAWQKILAL
GNQLGTTFVWELDCNDPNLTKCSQLVHPKSNSTIRQTSFSKDGSILVCVC
DDSTVWRWDRVN*
BS17975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
escl-PC | 462 | CG5202-PC | 1..462 | 1..462 | 2513 | 100 | Plus |
escl-PA | 462 | CG5202-PA | 1..462 | 1..462 | 2513 | 100 | Plus |
esc-PA | 425 | CG14941-PA | 2..419 | 35..460 | 1356 | 58.4 | Plus |