Clone Sequence Records
BS17980.3prime Sequence
899 bp (765 high quality bases) assembled on 2007-05-30
> BS17980.3prime
ATGGTCTAGAAAGCTTTTAGCCTTCTTCCTTGGGCGGGGTGAACCATCCA
TTCTTTTCGTGAATCTGCACCAGAGATTTGAAGCTCTGCTGGGCTCGAGC
CAAACTGTATTGGCCCTGGGTCAGTGCTTTGGTAGCCCCGAATTGGATGC
GCGCCTTTCCCTTGACGAGAGTGGCTGCAATTTGCATGATAACCGCTTCC
ACGGTATATGCCGAGCTCCAGCCCTGTTTGGTCAGCAATTCCATGCAGAT
GGCACCACCGATGAGCACATAGCCGCCTGAGATAATCGGATGGACAACGC
GCACAAATGGCGGCTCGAAGGGATACGTCTCCTTGAACAGGATGTTGAGC
AGTATGCTGTCCTTGCCCTCCTTCTCCTTGAGCATTTGCAGATCACTGTG
CAGCGGACTGTCCGGGTCGACAGACTTGAGGCGAATGTTCCATTCGTAAA
TCGACTCATTGACGAGCTCAATAGAATACATGTTCTTTTTGAAGGCGTCT
GAGCGATAAATGTCGCGTAATTCCTTCATTAAGCGATCGGTTGCCTGCAC
GGAACCCGAAACGGAACCTTTTAGATAGTCTTGTCTCTGACTTTGACGCA
GTTTTTCTAGAGTCGCTAGGTGTTCCACTTCCATGTCGTCCTTCTTGCTT
GTACTGCGTACATCATCCATTTCCAGCGGCAAGTCCTCATCGCCCTCGCT
CTCCTGTTCGCTCTCGCCGATGGGATCCTCGATCTCCTCCTGATCCGAAT
CGGTCTCCTCGTTGCCGTGGGGTCCGCCACCGCCCCCCGCTCCACCACCA
CCTGGTCTCTGCTCGCAGCGAAAGGGGGAAGCGGATGGCGGCGGCGTTTG
CAGCGGCAGAGCAAATTATCGATGTCGGGTGGCAGTGGAACGTTGTGAA
BS17980.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2924-PA | 1194 | CG2924-RA | 349..1194 | 862..17 | 4180 | 99.7 | Minus |
| CG2924-PC | 1194 | CG2924-RC | 349..1194 | 862..17 | 4180 | 99.7 | Minus |
| CG2924-PA | 1194 | CG2924-RA | 311..348 | 899..862 | 190 | 100 | Minus |
| CG2924-PC | 1194 | CG2924-RC | 311..348 | 899..862 | 190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2924-RD | 2606 | CG2924-RD | 929..1814 | 899..15 | 4375 | 99.7 | Minus |
| CG2924-RB | 2717 | CG2924-RB | 1040..1925 | 899..15 | 4375 | 99.7 | Minus |
| CG2924-RE | 2928 | CG2924-RE | 979..1864 | 899..15 | 4375 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2266247..2266539 | 276..568 | 1465 | 100 | Plus |
| X | 23542271 | X | 2266820..2267076 | 644..899 | 1220 | 99.2 | Plus |
| X | 23542271 | X | 2266035..2266186 | 127..278 | 760 | 100 | Plus |
| X | 23542271 | X | 2265876..2265955 | 48..127 | 400 | 100 | Plus |
| X | 23542271 | X | 2266596..2266673 | 568..645 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:03:32 has no hits.
BS17980.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:40 Download gff for
BS17980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-PC | 313..1194 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 21:56:59 Download gff for
BS17980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RA | 979..1864 | 15..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:24 Download gff for
BS17980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RE | 979..1864 | 15..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:24 Download gff for
BS17980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2265783..2265816 | 15..48 | 97 | <- | Plus |
| X | 2265877..2265955 | 49..127 | 100 | <- | Plus |
| X | 2266036..2266184 | 128..276 | 100 | <- | Plus |
| X | 2266248..2266539 | 277..568 | 100 | <- | Plus |
| X | 2266597..2266671 | 569..643 | 100 | <- | Plus |
| X | 2266820..2267076 | 644..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 21:56:59 Download gff for
BS17980.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2159816..2159849 | 15..48 | 97 | <- | Plus |
| arm_X | 2159910..2159988 | 49..127 | 100 | <- | Plus |
| arm_X | 2160069..2160217 | 128..276 | 100 | <- | Plus |
| arm_X | 2160281..2160572 | 277..568 | 100 | <- | Plus |
| arm_X | 2160630..2160704 | 569..643 | 100 | <- | Plus |
| arm_X | 2160853..2161109 | 644..899 | 99 | | Plus |
BS17980.5prime Sequence
859 bp (780 high quality bases) assembled on 2007-05-30
> BS17980.5prime
GAAGTTATCAGTCGACATGGCGTGCCTTAACACCCTGAAGCAGGAAATCA
AAACGCTAGAGAAGATCTTCCCGAAGAACCACGAGCGCTTTCAGATCCTC
AATTCCAGCGTCGACGAACTGCTCTGCCGTTTTATCGATAAGAATGGAAA
GCGGTACGATATTCACGCCAACATAACGGAAACGTATCCCTCATCGCCGC
CAGTTTGGTTCGCCGAAAGCGAGGAGACGAGCGTCACAAATGCTGTTCAA
ATACTTAGCAATACGAATGGACGTGATAATCACGTGATCAATCAGGTGGG
CATACTGCTGCGTGAGCTGTGCCGCCTTCACAACGTTCCACTGCCACCCG
ACATCGATAATTTGGCTCTGCCGCTGCAAACGCCGCCGCCATCCGCTTCC
CCCCTTCGCTGCGAGCAGAGACCAGGTGGTGGTGGAGCGGGGGGCGGTGG
CGGACCCCACGGCAACGAGGAGACCGATTCGGATCAGGAGGAGATCGAGG
ATCCCATCGGCGAGAGCGAACAGGAGAGCGAGGGCGATGAGGACTTGCCG
CTGGAAATGGATGATGTACGCAGTACAAGCAAGAAGGACGACATGGAAGT
GGAACACCTAGCGACTCTAGAAAAACTGCGTCAAAGTCAGAGACAAGACT
ATCTAAAAGGTTCCGTTTCGGGTTCCGTGCAGGCAACCGATCGCTTAATG
AAGGAATTACGCGACATTTATCGCTCAGACGCCTTCAAAAAGAACATGTA
TTCTATTGAGCTCGTCAATGAGTCGATTTACGAATGGGACATTCGCCTNC
AGTCTGTCGACCCGGACAGTCCGCTGCACAGTGATCTGCAAATGCTCAAG
GAGAAGGAG
BS17980.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2924-PA | 1194 | CG2924-RA | 1..843 | 17..859 | 4146 | 99.6 | Plus |
| CG2924-PC | 1194 | CG2924-RC | 1..843 | 17..859 | 4146 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2924-RD | 2606 | CG2924-RD | 619..1461 | 17..859 | 4174 | 99.6 | Plus |
| CG2924-RB | 2717 | CG2924-RB | 730..1572 | 17..859 | 4174 | 99.6 | Plus |
| CG2924-RE | 2928 | CG2924-RE | 669..1511 | 17..859 | 4174 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2266820..2267110 | 583..293 | 1455 | 100 | Minus |
| X | 23542271 | X | 2266339..2266539 | 859..659 | 964 | 98.5 | Minus |
| X | 23542271 | X | 2268937..2269099 | 179..17 | 815 | 100 | Minus |
| X | 23542271 | X | 2267174..2267294 | 298..178 | 605 | 100 | Minus |
| X | 23542271 | X | 2266596..2266673 | 659..582 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:15:50 has no hits.
BS17980.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:55:44 Download gff for
BS17980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-PC | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:41 Download gff for
BS17980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RA | 663..1511 | 9..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:59 Download gff for
BS17980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RE | 663..1511 | 9..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:59 Download gff for
BS17980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2266339..2266539 | 659..859 | 98 | <- | Minus |
| X | 2266597..2266671 | 584..658 | 100 | <- | Minus |
| X | 2266820..2267107 | 296..583 | 100 | <- | Minus |
| X | 2267177..2267293 | 179..295 | 100 | <- | Minus |
| X | 2268938..2269105 | 9..178 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:41 Download gff for
BS17980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2160372..2160572 | 659..859 | 98 | <- | Minus |
| arm_X | 2160630..2160704 | 584..658 | 100 | <- | Minus |
| arm_X | 2160853..2161140 | 296..583 | 100 | <- | Minus |
| arm_X | 2161210..2161326 | 179..295 | 100 | <- | Minus |
| arm_X | 2162971..2163138 | 9..178 | 97 | | Minus |
BS17980.complete Sequence
1226 bp assembled on 2010-01-09
GenBank Submission: KX800457
> BS17980.complete
GAAGTTATCAGTCGACATGGCGTGCCTTAACACCCTGAAGCAGGAAATCA
AAACGCTAGAGAAGATCTTCCCGAAGAACCACGAGCGCTTTCAGATCCTC
AATTCCAGCGTCGACGAACTGCTCTGCCGTTTTATCGATAAGAATGGAAA
GCGGTACGATATTCACGCCAACATAACGGAAACGTATCCCTCATCGCCGC
CAGTTTGGTTCGCCGAAAGCGAGGAGACGAGCGTCACAAATGCTGTTCAA
ATACTTAGCAATACGAATGGACGTGATAATCACGTGATCAATCAGGTGGG
CATACTGCTGCGTGAGCTGTGCCGCCTTCACAACGTTCCACTGCCACCCG
ACATCGATAATTTGGCTCTGCCGCTGCAAACGCCGCCGCCATCCGCTTCC
CCCCTTCGCTGCGAGCAGAGACCAGGTGGTGGTGGAGCGGGGGGCGGTGG
CGGACCCCACGGCAACGAGGAGACCGATTCGGATCAGGAGGAGATCGAGG
ATCCCATCGGCGAGAGCGAACAGGAGAGCGAGGGCGATGAGGACTTGCCG
CTGGAAATGGATGATGTACGCAGTACAAGCAAGAAGGACGACATGGAAGT
GGAACACCTAGCGACTCTAGAAAAACTGCGTCAAAGTCAGAGACAAGACT
ATCTAAAAGGTTCCGTTTCGGGTTCCGTGCAGGCAACCGATCGCTTAATG
AAGGAATTACGCGACATTTATCGCTCAGACGCCTTCAAAAAGAACATGTA
TTCTATTGAGCTCGTCAATGAGTCGATTTACGAATGGAACATTCGCCTCA
AGTCTGTCGACCCGGACAGTCCGCTGCACAGTGATCTGCAAATGCTCAAG
GAGAAGGAGGGCAAGGACAGCATACTGCTCAACATCCTGTTCAAGGAGAC
GTATCCCTTCGAGCCGCCATTTGTGCGCGTTGTCCATCCGATTATCTCAG
GCGGCTATGTGCTCATCGGTGGTGCCATCTGCATGGAATTGCTGACCAAA
CAGGGCTGGAGCTCGGCATATACCGTGGAAGCGGTTATCATGCAAATTGC
AGCCACTCTCGTCAAGGGAAAGGCGCGCATCCAATTCGGGGCTACCAAAG
CACTGACCCAGGGCCAATACAGTTTGGCTCGAGCCCAGCAGAGCTTCAAA
TCTCTGGTGCAGATTCACGAAAAGAATGGATGGTTCACCCCGCCCAAGGA
AGATGGCTAAAAGCTTTCTAGACCAT
BS17980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2924-RD | 1194 | CG2924-PD | 1..1194 | 17..1210 | 5970 | 100 | Plus |
| CG2924-RB | 1194 | CG2924-PB | 1..1194 | 17..1210 | 5970 | 100 | Plus |
| CG2924-RE | 1194 | CG2924-PE | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2924-RD | 2606 | CG2924-RD | 619..1814 | 17..1212 | 5980 | 100 | Plus |
| CG2924-RB | 2717 | CG2924-RB | 730..1925 | 17..1212 | 5980 | 100 | Plus |
| CG2924-RE | 2928 | CG2924-RE | 669..1864 | 17..1212 | 5980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2266247..2266539 | 951..659 | 1465 | 100 | Minus |
| X | 23542271 | X | 2266820..2267110 | 583..293 | 1455 | 100 | Minus |
| X | 23542271 | X | 2268937..2269099 | 179..17 | 815 | 100 | Minus |
| X | 23542271 | X | 2266035..2266186 | 1100..949 | 760 | 100 | Minus |
| X | 23542271 | X | 2267174..2267294 | 298..178 | 605 | 100 | Minus |
| X | 23542271 | X | 2265876..2265955 | 1179..1100 | 400 | 100 | Minus |
| X | 23542271 | X | 2266596..2266673 | 659..582 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:54:56 has no hits.
BS17980.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:25 Download gff for
BS17980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RC | 1..1194 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:06:03 Download gff for
BS17980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RC | 614..1805 | 17..1208 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:17 Download gff for
BS17980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RA | 669..1860 | 17..1208 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:25 Download gff for
BS17980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RC | 608..1809 | 9..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:39 Download gff for
BS17980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RE | 669..1860 | 17..1208 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:39 Download gff for
BS17980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2266036..2266184 | 951..1099 | 100 | <- | Minus |
| X | 2266248..2266539 | 659..950 | 100 | <- | Minus |
| X | 2266597..2266671 | 584..658 | 100 | <- | Minus |
| X | 2265787..2265816 | 1179..1208 | 100 | <- | Minus |
| X | 2265877..2265955 | 1100..1178 | 100 | <- | Minus |
| X | 2266820..2267107 | 296..583 | 100 | <- | Minus |
| X | 2267177..2267293 | 179..295 | 100 | <- | Minus |
| X | 2268938..2269099 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:17 Download gff for
BS17980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2159820..2159849 | 1179..1208 | 100 | <- | Minus |
| arm_X | 2159910..2159988 | 1100..1178 | 100 | <- | Minus |
| arm_X | 2160069..2160217 | 951..1099 | 100 | <- | Minus |
| arm_X | 2160281..2160572 | 659..950 | 100 | <- | Minus |
| arm_X | 2160630..2160704 | 584..658 | 100 | <- | Minus |
| arm_X | 2160853..2161140 | 296..583 | 100 | <- | Minus |
| arm_X | 2161210..2161326 | 179..295 | 100 | <- | Minus |
| arm_X | 2162971..2163132 | 17..178 | 100 | | Minus |
BS17980.pep Sequence
Translation from 16 to 1209
> BS17980.pep
MACLNTLKQEIKTLEKIFPKNHERFQILNSSVDELLCRFIDKNGKRYDIH
ANITETYPSSPPVWFAESEETSVTNAVQILSNTNGRDNHVINQVGILLRE
LCRLHNVPLPPDIDNLALPLQTPPPSASPLRCEQRPGGGGAGGGGGPHGN
EETDSDQEEIEDPIGESEQESEGDEDLPLEMDDVRSTSKKDDMEVEHLAT
LEKLRQSQRQDYLKGSVSGSVQATDRLMKELRDIYRSDAFKKNMYSIELV
NESIYEWNIRLKSVDPDSPLHSDLQMLKEKEGKDSILLNILFKETYPFEP
PFVRVVHPIISGGYVLIGGAICMELLTKQGWSSAYTVEAVIMQIAATLVK
GKARIQFGATKALTQGQYSLARAQQSFKSLVQIHEKNGWFTPPKEDG*
BS17980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2924-PD | 397 | CG2924-PD | 1..397 | 1..397 | 2068 | 100 | Plus |
| CG2924-PB | 397 | CG2924-PB | 1..397 | 1..397 | 2068 | 100 | Plus |
| CG2924-PE | 397 | CG2924-PE | 1..397 | 1..397 | 2068 | 100 | Plus |
| CG2924-PA | 397 | CG2924-PA | 1..397 | 1..397 | 2068 | 100 | Plus |
| CG4502-PA | 306 | CG4502-PA | 140..306 | 224..397 | 452 | 51.7 | Plus |
