Clone BS17989 Report

Search the DGRC for BS17989

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:179
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptmei-P26-RA
Protein status:BS17989.pep: full length peptide match
Sequenced Size:3602

Clone Sequence Records

BS17989.complete Sequence

3602 bp assembled on 2009-12-07

GenBank Submission: KX800653

> BS17989.complete
GAAGTTATCAGTCGACATGACTACTTTGGAGGAGCCTGTCCAGGCGGCGG
ACACGGTCGATCCGTGTCCTCCGGGGATTCCCAATCTGAAAACCGTTCTC
AGCGACGATGCCTCGAACTCATCGGTGCTGGAGGACATCGATGTGAGCAA
TACGAGCAGCAGTAGCTCCAGTTCTAGCAGCTCTAGCTCCAGCTCTGGTT
CCTGCTCGGGATCGGGCACCGATACGGACACCGGCAAGGGTAGCAGCAAT
GTCGGCAGTCTGGATGTGACTAGCTCATCGAGCATTGGTTCAGAGACTTC
CATCTCATCGACGGGCTCCACAGCCATTGCAGGACCATCCACTTTGCTAG
ACGATTCGAACTCATCCGGACTGGGCCTGGTGGTGGATGTGGATAGCAAC
GGGAGCAGCCAGGAGCTGAGCAGCCACGGCGTCACCGAGCTGGACTCGCT
GGAGGACTCGTGCAGCGGCCTAATGATCAAGGATGGGGATAAGCTATGCA
AGCTGTGCAGCTTACGCCTCGTGATGCCGCGCATCTTGTCTTGCCTCCAC
GTATTCTGTGAGGACTGCCTGCAGGCAGTGGTATCGAAGGACACGATGTC
GGCCAGCTCGCCCAACAGCTGCTCCTCGTCGTCGTTCGATGGCAGCGAGC
ACCAGAACCGTTTGTCCGCTGTGTTCATCGAATGCCCCGTGTGCAAGCAG
GAGACACCGCTGGGACCCAAGGGTATCAAGGCACTACCCTGCGACTATAT
CGTGACCAATATACTGGACCTCTCCAATTTGGAGTCCGAGCACATTGTGT
GCACATCGTGCAAGAGCAAAGAGGAGGCCATTTCGCGTTGCAACGACTGC
GCCAACTTTCTTTGCAATGGCTGCGATAACGCCCATAAGTATATGCGTTG
CTTCGAAAATCACCATGTTGTGCGCATCGAGGATCTGACCAAGAACGTCC
ACGACAAGCTGATCATCCATAAGCCAGTGTTCTGCCCACAGCACGTAAGC
GAGAATCTCAAGTACTATTGCTTCACCTGCCAGGTGCCCACGTGCAATGA
TTGCCTGCTGAGCGATCACAAGGGCAGCGATCATCATTATGAGACGGCCA
CGGTGGCGGAGCAGGCGGTTCGAGCCGATCTCGAGGAAACACTGAGTGAT
ACGCTCAAGAAGGCCGACTACTGCAACGATGCGGGTAGCAATCTGGGCAG
TGCCCTCACTGAACTCCAGTCACAGCACGATACTGTGCGGCAGCAAATCG
AGGATGCCTACAAGTGCTACAAGCGTATGCTAGAATCGATCAAGGATCAG
ATGCTTAACGAGCTGGGACGCTTGCACTCGGATCGCGAGCTAAAGATCAT
GGATCTGATGCAGAGCATGGAGAATACTATGGGCAAGCTGCAGCACGCTG
CCCAGTTTGGCCAGCGGGCTGTCGATAAGGCCAATTCCATAGAGTTTCTG
CTGCTGAAGCCCATCATCAGTGCCCAGTGCTTGAATCTCATGGAGCAGAC
GCCCAAGTGCGATATCAACTATCAGCTGCAATTTGACTCGAAGCCAGAGA
TGTTCGAGCAATTCGCCAGGGAGATGTTTGGCAAATTTCAAACGGATCAC
ATTGACTCTAGTCCCAAGAAGCTGGGGATGACCCAGCAGCTGCAACAGCA
ACAGCAGCAGCAGCAGCAGTTGCAACAGCAACAACATCAGCACCAGCACC
AAGTGCAACAACAACAGCATCATCATCAGCAGCAGCAGCAGCAGAAACAG
CAGGTGCAGCATCAACAGCAGCAGCAAAAGCTGCAGTTGCAGCAACAACA
GCAGCATCAACACAACTCAAACAATTTGATTGTCGGCCATCGTGGCAGCT
CCTCTGTCCAAGGGCGCCTGACCTCAGCTGTATTTAGCCCCATCTCGCTG
CCCTCCTCGCTGCAGAGTTCCTTCGATGGCGACACCAACTCGGTGATGAG
CAATTTCTCCATGATGGACTCGCCGCCGCAGCCATCATCGCAACAGCAAT
TGCCATCTGCCCAGCAGCAGTCTCAGCAGCAGCAGCAGCAACAGCAGCAG
CAACAGGCGGTGGTGCTGCAGCAGGTGCAACAGCAGCAGAAGCACCAGCA
ACACCAAGTGCAGCAGCAGCAACAGCAACAGGTGCTGCATCAGCCAACAT
CGGCCCAGTCCATGCCGCAGCAGTTGGGTCAGCTCGTTGCACCGCAGGGA
ATTGTCCAGCAGGCTGGACATGTCAATCTCAACGCTGGTCCCGGTCCGAA
TATATCCATCAATGGACTGGGCGCCGGTGGTCCGCCACCTAGTTTTAGCA
TGCTGGAGTACAACATCTCACGACTGGCCAGCTTGACGGAAACAATGCCA
GACACCCTCAACGATGCACTGGCTGTTGGTGGAGGAGCAGCCGGACCCGT
TCCGAATGTTGTGGCCCAAGTGCCTGGTGGTTCGGCCGTGACTGGTGCAG
CCGTAGTGGGAGCATCGCATGCGCATCAGCAGCAATCGCAGGCCGTAATG
CCGGCATCGGCGGTCACTCCAACGCAGCCAATTACCTTGGCTGACATCCT
ATCGGGCGACCAGCGGGCGCTTAATAATCTCCAGGCGCTGGCCAAGCTGG
GACTCAACAACAATGATTTCTGCATGCCACCGGCTACATCGCCCAGCCTG
CAGTCCCTCAATCCAATCGTTGGTGGCGTGGAGGACATGGGACTCAATAA
CTTCCATGCCGTGGCTGCGCCAGGCACCACCAGTGTGGTCACCGGCCGGA
ACAAGGCCACTCCGATGCAGATCCGTTGCAAATTCGGTTCACTGGGCACC
GCCAAGGGTCAGTTTAATTCACCACATGGATTTTGCCTGGGCGTCGACGA
GGAGATCATCGTGGCGGACACGAACAACCATCGCATCGAGGTCTTCGACA
AGATGGGTGCCCTCAAGTTCCAGTTCGGTGTGGCCGGCAAGGAGGAGGGC
CAGCTCTGGTATCCGCGCAAGGTGGCCGTGATGCATAACAATGGCAAATT
TGTGGTCTGCGATCGTGGAAACGAACGTTCTCGCATGCAAATCTTTTCCA
AGTGCGGACACTTTATGCGCAAGATAGCTATTAGATACATTGATATCGTG
GCTGGCTTGGCTGTCACAGCTAAGGGTCACATTGTGGCCGTGGATAGCGT
GTCGCCCACCGTCTTTGTGATCTCCGAGGAGGGAGAATTGGTTCGCTGGT
TCGACTGCAGCGACTATATGCGCGAGCCCTCCGACATCGCTATACGAGAC
AACGATTTTTACGTGTGCGACTTCAAAGGCCATTGCGTGGCCGTTTTCCA
GGACGACGGCACATTCCTCTATCGCATTGGCAACGAGAAGGTCACTTGCT
TCCCCAATGGCATTGATATATCAAATGCCGGTGACGTGCTCATCGGTGAT
TCGCACGGCAATCGCTTCCACGTCGCCTGCTATTCCCGCGAAGGCGCCCT
TCAGTCCGAGTTCGAGTGTCCCCATGTAAAGGTTTCCCGCTGCTGCGGAC
TAAAAATCACATCCGAGGGCTATGTGGTTACGCTGGCAAAGAATAATCAT
CATGTTCTAGTCCTGAACACCCTCTATGTTCACTGAAAGCTTTCTAGACC
AT

BS17989.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
mei-P26-RD 3570 CG12218-PD 1..3570 17..3586 17850 100 Plus
mei-P26-RB 3570 CG12218-PB 1..3570 17..3586 17850 100 Plus
mei-P26-RA 3570 CG12218-PA 1..3570 17..3586 17850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
mei-P26-RD 8899 CG12218-RD 955..4524 17..3586 17850 100 Plus
mei-P26-RB 22580 CG12218-RB 517..4086 17..3586 17850 100 Plus
mei-P26-RA 5232 CG12218-RA 819..4388 17..3586 17850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9167155..9169262 508..2615 10540 100 Plus
X 23542271 X 9166539..9167032 17..510 2470 100 Plus
X 23542271 X 9169516..9169985 2615..3084 2350 100 Plus
X 23542271 X 9170302..9170538 3247..3483 1185 100 Plus
X 23542271 X 9170057..9170222 3083..3248 830 100 Plus
X 23542271 X 9170702..9170815 3473..3586 540 98.2 Plus
Blast to na_te.dros performed on 2014-11-28 02:25:32 has no hits.

BS17989.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:52 Download gff for BS17989.complete
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RA 822..4390 17..3585 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:57 Download gff for BS17989.complete
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RA 819..4387 17..3585 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:20 Download gff for BS17989.complete
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RA 822..4390 17..3585 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:08 Download gff for BS17989.complete
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RA 819..4387 17..3585 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:08 Download gff for BS17989.complete
Subject Subject Range Query Range Percent Splice Strand
X 9170304..9170536 3249..3481 100 -> Plus
X 9170711..9170814 3482..3585 100   Plus
X 9166539..9167032 17..510 100 -> Plus
X 9167158..9169262 511..2615 100 -> Plus
X 9169517..9169985 2616..3084 100 -> Plus
X 9170059..9170222 3085..3248 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:57 Download gff for BS17989.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9060572..9061065 17..510 100 -> Plus
arm_X 9061191..9063295 511..2615 100 -> Plus
arm_X 9063550..9064018 2616..3084 100 -> Plus
arm_X 9064092..9064255 3085..3248 100 -> Plus
arm_X 9064337..9064569 3249..3481 100 -> Plus
arm_X 9064744..9064847 3482..3585 100   Plus

BS17989.3prime Sequence

807 bp (706 high quality bases) assembled on 2007-05-30

> BS17989.3prime
ATGGTCTAGAAAGCTTTCAGTGAACATAGAGGGTGTTCAGGACTAGAACA
TGATGATTATTCTTTGCCAGCGTAACCACATAGCCCTCGGATGTGATTTT
TAGTCCGCAGCAGCGGGAAACCTTTACATGGGGACACTCGAACTCGGACT
GAAGGGCGCCTTCGCGGGAATAGCAGGCGACGTGGAAGCGATTGCCGTGC
GAATCACCGATGAGCACGTCACCGGCATTTGATATATCAATGCCATTGGG
GAAGCAAGTGACCTTCTCGTTGCCAATGCGATAGAGGAATGTGCCGTCGT
CCTGGAAAACGGCCACGCAATGGCCTTTGAAGTCGCACACGTAAAAATCG
TTGTCTCGTATAGCGATGTCGGAGGGCTCGCGCATATAGTCGCTGCAGTC
GAACCAGCGAACCAATTCTCCCTCCTCGGAGATCACAAAGACGGTGGGCG
ACACGCTATCCACGGCCACAATGTGACCCTTAGCTGTGACAGCCAAGCCA
GCCACGATATCAATGTATCTAATAGCTATCTTGCGCATAAAGTGTCCGCA
CTTGGAAAAGATTTGCATGCGAGAACGTTCGTTTCCACGATCGCAGACCA
CAAATTTGCCATTGTTATGCATCACGGCCACCTTGCGCGGATACCAGAGC
TGGCCCTCCTCCTTGCCGGCCACACCGAACTGGAACTTGAGGGCACCCAT
CTTGTCGAAGACCTCGATGCGATGGTTGTTCGTGTCCGCCACGATGATCT
CCTCGTCGACGCCCAGGCAAAATCCATGTGGTGAATTAAACTGACCCTTG
GCGGTGC

BS17989.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12218-PA 3570 mei-P26-RA 2780..3570 807..17 3955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
mei-P26-RD 8899 CG12218-RD 3734..4524 807..17 3955 100 Minus
mei-P26-RC 23041 CG12218-RC 3757..4547 807..17 3955 100 Minus
mei-P26-RB 22580 CG12218-RB 3296..4086 807..17 3955 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9169697..9169985 807..519 1445 100 Minus
X 23542271 X 9170302..9170538 356..120 1185 100 Minus
X 23542271 X 9170057..9170222 520..355 830 100 Minus
X 23542271 X 9170702..9170815 130..17 540 98.2 Minus
Blast to na_te.dros performed on 2015-02-13 06:08:04 has no hits.

BS17989.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:56:25 Download gff for BS17989.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12218-PA 2780..3570 17..807 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:11:50 Download gff for BS17989.3prime
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RB 3296..4090 13..807 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:35 Download gff for BS17989.3prime
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RB 3296..4090 13..807 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:35 Download gff for BS17989.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9170711..9170819 13..121 98   Minus
X 9169697..9169985 519..807 100 -> Minus
X 9170059..9170222 355..518 100 -> Minus
X 9170304..9170536 122..354 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:11:50 Download gff for BS17989.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9063730..9064018 519..807 100 -> Minus
arm_X 9064092..9064255 355..518 100 -> Minus
arm_X 9064337..9064569 122..354 100 -> Minus
arm_X 9064744..9064852 13..121 98   Minus

BS17989.5prime Sequence

809 bp (806 high quality bases) assembled on 2007-05-30

> BS17989.5prime
GAAGTTATCAGTCGACATGACTACTTTGGAGGAGCCTGTCCAGGCGGCGG
ACACGGTCGATCCGTGTCCTCCGGGGATTCCCAATCTGAAAACCGTTCTC
AGCGACGATGCCTCGAACTCATCGGTGCTGGAGGACATCGATGTGAGCAA
TACGAGCAGCAGTAGCTCCAGTTCTAGCAGCTCTAGCTCCAGCTCTGGTT
CCTGCTCGGGATCGGGCACCGATACGGACACCGGCAAGGGTAGCAGCAAT
GTCGGCAGTCTGGATGTGACTAGCTCATCGAGCATTGGTTCAGAGACTTC
CATCTCATCGACGGGCTCCACAGCCATTGCAGGACCATCCACTTTGCTAG
ACGATTCGAACTCATCCGGACTGGGCCTGGTGGTGGATGTGGATAGCAAC
GGGAGCAGCCAGGAGCTGAGCAGCCACGGCGTCACCGAGCTGGACTCGCT
GGAGGACTCGTGCAGCGGCCTAATGATCAAGGATGGGGATAAGCTATGCA
AGCTGTGCAGCTTACGCCTCGTGATGCCGCGCATCTTGTCTTGCCTCCAC
GTATTCTGTGAGGACTGCCTGCAGGCAGTGGTATCGAAGGACACGATGTC
GGCCAGCTCGCCCAACAGCTGCTCCTCGTCGTCGTTCGATGGCAGCGAGC
ACCAGAACCGTTTGTCCGCTGTGTTCATCGAATGCCCCGTGTGCAAGCAG
GAGACACCGCTGGGACCCAAGGGTATCAAGGCACTACCCTGCGACTATAT
CGTGACCAATATACTGGACCTCTCCAATTTGGAGTCCGAGCACATTGTGT
GCACATCGT

BS17989.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12218-PA 3570 mei-P26-RA 1..793 17..809 3965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
mei-P26-RD 8899 CG12218-RD 955..1747 17..809 3965 100 Plus
mei-P26-RC 23041 CG12218-RC 927..1719 17..809 3965 100 Plus
mei-P26-RB 22580 CG12218-RB 517..1309 17..809 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9166539..9167032 17..510 2470 100 Plus
X 23542271 X 9167155..9167456 508..809 1510 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:18:00 has no hits.

BS17989.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:56:30 Download gff for BS17989.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12218-PA 1..793 17..809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:03 Download gff for BS17989.5prime
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RB 507..1309 5..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:59 Download gff for BS17989.5prime
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RB 507..1309 5..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:59 Download gff for BS17989.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9166529..9167032 5..510 99 -> Plus
X 9167158..9167456 511..809 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:03 Download gff for BS17989.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9061191..9061489 511..809 100   Plus
arm_X 9060562..9061065 5..510 99 -> Plus

BS17989.pep Sequence

Translation from 16 to 3585

> BS17989.pep
MTTLEEPVQAADTVDPCPPGIPNLKTVLSDDASNSSVLEDIDVSNTSSSS
SSSSSSSSSSGSCSGSGTDTDTGKGSSNVGSLDVTSSSSIGSETSISSTG
STAIAGPSTLLDDSNSSGLGLVVDVDSNGSSQELSSHGVTELDSLEDSCS
GLMIKDGDKLCKLCSLRLVMPRILSCLHVFCEDCLQAVVSKDTMSASSPN
SCSSSSFDGSEHQNRLSAVFIECPVCKQETPLGPKGIKALPCDYIVTNIL
DLSNLESEHIVCTSCKSKEEAISRCNDCANFLCNGCDNAHKYMRCFENHH
VVRIEDLTKNVHDKLIIHKPVFCPQHVSENLKYYCFTCQVPTCNDCLLSD
HKGSDHHYETATVAEQAVRADLEETLSDTLKKADYCNDAGSNLGSALTEL
QSQHDTVRQQIEDAYKCYKRMLESIKDQMLNELGRLHSDRELKIMDLMQS
MENTMGKLQHAAQFGQRAVDKANSIEFLLLKPIISAQCLNLMEQTPKCDI
NYQLQFDSKPEMFEQFAREMFGKFQTDHIDSSPKKLGMTQQLQQQQQQQQ
QLQQQQHQHQHQVQQQQHHHQQQQQQKQQVQHQQQQQKLQLQQQQQHQHN
SNNLIVGHRGSSSVQGRLTSAVFSPISLPSSLQSSFDGDTNSVMSNFSMM
DSPPQPSSQQQLPSAQQQSQQQQQQQQQQQAVVLQQVQQQQKHQQHQVQQ
QQQQQVLHQPTSAQSMPQQLGQLVAPQGIVQQAGHVNLNAGPGPNISING
LGAGGPPPSFSMLEYNISRLASLTETMPDTLNDALAVGGGAAGPVPNVVA
QVPGGSAVTGAAVVGASHAHQQQSQAVMPASAVTPTQPITLADILSGDQR
ALNNLQALAKLGLNNNDFCMPPATSPSLQSLNPIVGGVEDMGLNNFHAVA
APGTTSVVTGRNKATPMQIRCKFGSLGTAKGQFNSPHGFCLGVDEEIIVA
DTNNHRIEVFDKMGALKFQFGVAGKEEGQLWYPRKVAVMHNNGKFVVCDR
GNERSRMQIFSKCGHFMRKIAIRYIDIVAGLAVTAKGHIVAVDSVSPTVF
VISEEGELVRWFDCSDYMREPSDIAIRDNDFYVCDFKGHCVAVFQDDGTF
LYRIGNEKVTCFPNGIDISNAGDVLIGDSHGNRFHVACYSREGALQSEFE
CPHVKVSRCCGLKITSEGYVVTLAKNNHHVLVLNTLYVH*

BS17989.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
mei-P26-PD 1189 CG12218-PD 1..1189 1..1189 6211 100 Plus
mei-P26-PB 1189 CG12218-PB 1..1189 1..1189 6211 100 Plus
mei-P26-PA 1189 CG12218-PA 1..1189 1..1189 6211 100 Plus
mei-P26-PC 1206 CG12218-PC 1..1206 1..1189 6183 98.6 Plus
mei-P26-PE 1206 CG12218-PE 1..1206 1..1189 6183 98.6 Plus