Clone BS17990 Report

Search the DGRC for BS17990

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:179
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptPph13-RA
Protein status:BS17990.pep: full length peptide match
Sequenced Size:1106

Clone Sequence Records

BS17990.complete Sequence

1106 bp assembled on 2010-02-09

GenBank Submission: KX804257

> BS17990.complete
GAAGTTATCAGTCGACATGGACAAAGGCACAATGAAGCGCAAGCAGCGGA
GATACAGAACCACATTTAACACACTGCAACTGCAGGAGCTGGAAAGGGCG
TTCCAGCGGACACACTATCCGGACGTGTTTTTCCGAGAGGAGCTGGCCGT
GAGGATCGATTTGACGGAGGCGAGGGTGCAGGTGTGGTTCCAGAACCGGC
GGGCCAAGTGGCGCAAGCAGGAGAAGATCGGTGGGCTTGGCGGAGATTAT
AAGGAGGGTGCGTTGGATCTCGACGTGTCCTACGACGACAGCGCCGTCCT
GGGCCAACTGGATAGTGCGCTGGGCGGCGGTGGAACTCTATTGCCGGACA
CCCCACCGCAATCCTCGAACTCCCTTGATAACGAACTTAAGGCCTCCTAC
GGCACGGGGGCCATGTCGCCCTCTAGGCTGTCACCGAATATATTTCTCAA
CCTCAACATTGACCACTTGGGACTGGAGCGGGGTGGCAGTGGCCTCTCCA
TGGAGTGGTCCACATATCCTCCGCAAACGCAAGCGCAGACACACCCGCAG
ATGGACTCCGACAATCAGCTCCAGCAGCACCCGCCTCAACAGCATGCATC
CGATCCGATTCACGCCGGGAGTTCGAGTCATCACCAGCAGCAGCAGCAGC
AGCACCAGCAGGAGCAGCACAATCCCCAGCTTCATCCGGGGCTTGAGTTT
GCCGCCTCATTGAGTTTGGACATGACCGATGGCTCCTCCGCCTACGACGA
GATGAAGTTTCTCAGCGTGGACGTGGACCAGTTCACGATCGACAGCTTCA
AGGCGGACTGCATTCTGAGCATGGAGCAGTCCCAGATGCAGGCCTACGGC
GGTCACTCCCAGCTGGTCGGATCATCCAATGAACTGTGCCTGGACGGGAT
TGGCATGTCCTCCTTTGGCATGGAAGAGGGTGAGCCCAAGTCGCCTCCCT
CTCTTTTGGTGCTGGACAAGTCGCTGCCCTCTTTGAGCATAGGCGTGGAA
GGAATCGCTGATCTCGTGGAGCAACTGCATCATCACCAGCATGAGGGCGG
CCCAGTGGGCGGTGGTGTCATCACTGGCGATGTCATGTGAAAGCTTTCTA
GACCAT

BS17990.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pph13-RA 1074 CG2819-PA 1..1074 17..1090 5370 100 Plus
al-RA 1227 CG3935-PA 293..435 84..226 265 79 Plus
CG11294-RB 786 CG11294-PB 98..247 72..221 255 78 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pph13-RA 1880 CG2819-RA 507..1582 16..1091 5380 100 Plus
al-RA 1806 CG3935-RA 703..845 84..226 265 79 Plus
CG11294-RB 1291 CG11294-RB 255..404 72..221 255 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 578483..579251 323..1091 3845 100 Plus
2L 23513712 2L 578152..578421 55..324 1350 100 Plus
2L 23513712 2L 577992..578033 16..57 210 100 Plus
3R 32079331 3R 18237953..18238000 176..223 210 95.8 Plus
X 23542271 X 8692707..8692751 221..177 195 95.6 Minus
2L 23513712 2L 584408..584448 219..179 190 97.6 Minus
Blast to na_te.dros performed on 2014-11-28 03:05:12 has no hits.

BS17990.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:26 Download gff for BS17990.complete
Subject Subject Range Query Range Percent Splice Strand
Pph13-RA 1..1074 17..1090 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:47 Download gff for BS17990.complete
Subject Subject Range Query Range Percent Splice Strand
Pph13-RA 506..1578 17..1089 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:48 Download gff for BS17990.complete
Subject Subject Range Query Range Percent Splice Strand
Pph13-RA 508..1580 17..1089 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:26 Download gff for BS17990.complete
Subject Subject Range Query Range Percent Splice Strand
Pph13-RA 502..1580 12..1091 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:23 Download gff for BS17990.complete
Subject Subject Range Query Range Percent Splice Strand
Pph13-RA 508..1580 17..1089 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:23 Download gff for BS17990.complete
Subject Subject Range Query Range Percent Splice Strand
2L 577993..578033 17..57 100 -> Plus
2L 578155..578420 58..323 100 -> Plus
2L 578484..579249 324..1089 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:48 Download gff for BS17990.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 577993..578033 17..57 100 -> Plus
arm_2L 578155..578420 58..323 100 -> Plus
arm_2L 578484..579249 324..1089 100   Plus

BS17990.3prime Sequence

802 bp (707 high quality bases) assembled on 2007-05-30

> BS17990.3prime
ATGGTCTAGAAAGCTTTCACATGACATCGCCAGTGATGACACCACCGCCC
ACTGGGCCGCCCTCATGCTGGTGATGATGCAGTTGCTCCACGAGATCAGC
GATTCCTTCCACGCCTATGCTCAAAGAGGGCAGCGACTTGTCCAGCACCA
AAAGAGAGGGAGGCGACTTGGGCTCACCCTCTTCCATGCCAAAGGAGGAC
ATGCCAATCCCGTCCAGGCACAGTTCATTGGATGATCCGACCAGCTGGGA
GTGACCGCCGTAGGCCTGCATCTGGGACTGCTCCATGCTCAGAATGCAGT
CCGCCTTGAAGCTGTCGATCGTGAACTGGTCCACGTCCACGCTGAGAAAC
TTCATCTCGTCGTAGGCGGAGGAGCCATCGGTCATGTCCAAACTCAATGA
GGCGGCAAACTCAAGCCCCGGATGAAGCTGGGGATTGTGCTGCTCCTGCT
GGTGCTGCTGCTGCTGCTGCTGGTGATGACTCGAACTCCCGGCGTGAATC
GGATCGGATGCATGCTGTTGAGGCGGGTGCTGCTGGAGCTGATTGTCGGA
GTCCATCTGCGGGTGTGTCTGCGCTTGCGTTTGCGGAGGATATGTGGACC
ACTCCATGGAGAGGCCACTGCCACCCCGCTCCAGTCCCAAGTGGTCAATG
TTGAGGTTGAGAAATATATTCGGTGACAGCCTAGAGGGCGACATGGCCCC
CGTGCCGTANGAGGCCTTAAGTTCGTTATCAAGGGAGTTCGAGGATTGCG
GTGGGGTGTCCGGCAATAGAGTTCCACCGCCGCCCAGCGCACTATCCAGT
TG

BS17990.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2819-PA 1074 Pph13-RA 289..1074 802..17 3911 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
Pph13-RA 1880 CG2819-RA 796..1582 802..16 3924 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 578483..579251 784..16 3834 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 23:49:59 has no hits.

BS17990.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:56:33 Download gff for BS17990.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2819-PA 289..1074 17..802 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:22:09 Download gff for BS17990.3prime
Subject Subject Range Query Range Percent Splice Strand
Pph13-RA 796..1582 16..802 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:20 Download gff for BS17990.3prime
Subject Subject Range Query Range Percent Splice Strand
Pph13-RA 796..1582 16..802 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:20 Download gff for BS17990.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 578402..578420 784..802 100 -> Minus
2L 578484..579251 16..783 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:22:09 Download gff for BS17990.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 578402..578420 784..802 100 -> Minus
arm_2L 578484..579251 16..783 99   Minus

BS17990.5prime Sequence

685 bp (662 high quality bases) assembled on 2007-05-30

> BS17990.5prime
GAAGTTATCACTCGACATGGACAAAGGCACAATGAAGCGCAAGCAGCGGA
GATACAGAACCACATTTAACACACTGCAACTGCAGGAGCTGGAAAGGGCG
TTCCAGCGGACACACTATCCGGACGTGTTTTTCCGAGAGGAGCTGGCCGT
GAGGATCGATTTGACGGAGGCGAGGGTGCAGGTGTGGTTCCAGAACCGGC
GGGCCAAGTGGCGCAAGCAGGAGAAGATCGGTGGGCTTGGCGGAGATTAT
AAGGAGGGTGCGTTGGATCTCGACGTGTCCTACGACGACAGCGCCGTCCT
GGGCCAACTGGATAGTGCGCTGGGCGGCGGTGGAACTCTATTGCCGGACA
CCCCACCGCAATCCTCGAACTCCCTTGATAACGAACTTAAGGCCTCCTAC
GGCACGGGGGCCATGTCGCCCTCTAGGCTGTCACCGAATATATTTCTCAA
CCTCAACATTGACCACTTGGGACTGGAGCGGGGTGGCAGTGGCCTCTCCA
TGGAGTGGTCCACATATCCTCCGCAAACGCAAGCGCAGACACACCCGCAG
ATGGACTCCGACAATCAGCTCCAGCAGCACCCGCCTCAACAGCATGCATC
CGATCCGATTCACGCCGGGAGTTCGAGTCATCACCAGCAGCAGCAGCAGC
AGCACCAGCAGGAGCAGCACAATCCCCAGCTTCAT

BS17990.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2819-PA 1074 Pph13-RA 1..669 17..685 3345 100 Plus
CG31240-PA 1839 repo-RA 1042..1085 176..219 195 97.7 Plus
CG2851-PA 1260 Gsc-RA 992..1031 180..219 175 97.5 Plus
CG11294-PA 786 CG11294-RA 205..247 179..221 165 95.3 Plus
CG1447-PB 957 Ptx1-RB 354..390 181..217 135 94.5 Plus
CG1447-PA 1530 Ptx1-RA 927..963 181..217 135 94.5 Plus
CG1447-PC 1545 Ptx1-RC 942..978 181..217 135 94.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
Pph13-RA 1880 CG2819-RA 507..1176 16..685 3350 100 Plus
al-RA 1806 CG3935-RA 703..845 84..226 265 79 Plus
CG11294-RB 1291 CG11294-RB 255..404 72..221 255 78.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 578483..578845 323..685 1815 100 Plus
2L 23513712 2L 578152..578421 55..324 1350 100 Plus
2L 23513712 2L 577992..578033 16..57 210 100 Plus
3R 32079331 3R 18237953..18238000 176..223 210 95.8 Plus
X 23542271 X 8692707..8692751 221..177 195 95.6 Minus
2L 23513712 2L 584408..584448 219..179 190 97.6 Minus
Blast to na_te.dros performed on 2015-02-11 05:18:08 has no hits.

BS17990.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:56:39 Download gff for BS17990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2819-PA 1..669 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:04 Download gff for BS17990.5prime
Subject Subject Range Query Range Percent Splice Strand
Pph13-RA 504..1176 12..685 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:09 Download gff for BS17990.5prime
Subject Subject Range Query Range Percent Splice Strand
Pph13-RA 504..1176 12..685 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:09 Download gff for BS17990.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 577989..578033 12..57 97 -> Plus
2L 578155..578420 58..323 100 -> Plus
2L 578484..578845 324..685 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:04 Download gff for BS17990.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 577989..578033 12..57 97 -> Plus
arm_2L 578155..578420 58..323 100 -> Plus
arm_2L 578484..578845 324..685 100   Plus

BS17990.pep Sequence

Translation from 16 to 1089

> BS17990.pep
MDKGTMKRKQRRYRTTFNTLQLQELERAFQRTHYPDVFFREELAVRIDLT
EARVQVWFQNRRAKWRKQEKIGGLGGDYKEGALDLDVSYDDSAVLGQLDS
ALGGGGTLLPDTPPQSSNSLDNELKASYGTGAMSPSRLSPNIFLNLNIDH
LGLERGGSGLSMEWSTYPPQTQAQTHPQMDSDNQLQQHPPQQHASDPIHA
GSSSHHQQQQQQHQQEQHNPQLHPGLEFAASLSLDMTDGSSAYDEMKFLS
VDVDQFTIDSFKADCILSMEQSQMQAYGGHSQLVGSSNELCLDGIGMSSF
GMEEGEPKSPPSLLVLDKSLPSLSIGVEGIADLVEQLHHHQHEGGPVGGG
VITGDVM*

BS17990.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Pph13-PA 357 CG2819-PA 1..357 1..357 1877 100 Plus
al-PA 408 CG3935-PA 77..147 2..72 300 77.5 Plus
CG11294-PB 261 CG11294-PB 21..247 7..278 288 34.9 Plus
CG11294-PA 261 CG11294-PA 21..247 7..278 288 34.9 Plus
otp-PF 313 CG10036-PF 5..247 2..224 283 34 Plus