Clone Sequence Records
BS17990.complete Sequence
1106 bp assembled on 2010-02-09
GenBank Submission: KX804257
> BS17990.complete
GAAGTTATCAGTCGACATGGACAAAGGCACAATGAAGCGCAAGCAGCGGA
GATACAGAACCACATTTAACACACTGCAACTGCAGGAGCTGGAAAGGGCG
TTCCAGCGGACACACTATCCGGACGTGTTTTTCCGAGAGGAGCTGGCCGT
GAGGATCGATTTGACGGAGGCGAGGGTGCAGGTGTGGTTCCAGAACCGGC
GGGCCAAGTGGCGCAAGCAGGAGAAGATCGGTGGGCTTGGCGGAGATTAT
AAGGAGGGTGCGTTGGATCTCGACGTGTCCTACGACGACAGCGCCGTCCT
GGGCCAACTGGATAGTGCGCTGGGCGGCGGTGGAACTCTATTGCCGGACA
CCCCACCGCAATCCTCGAACTCCCTTGATAACGAACTTAAGGCCTCCTAC
GGCACGGGGGCCATGTCGCCCTCTAGGCTGTCACCGAATATATTTCTCAA
CCTCAACATTGACCACTTGGGACTGGAGCGGGGTGGCAGTGGCCTCTCCA
TGGAGTGGTCCACATATCCTCCGCAAACGCAAGCGCAGACACACCCGCAG
ATGGACTCCGACAATCAGCTCCAGCAGCACCCGCCTCAACAGCATGCATC
CGATCCGATTCACGCCGGGAGTTCGAGTCATCACCAGCAGCAGCAGCAGC
AGCACCAGCAGGAGCAGCACAATCCCCAGCTTCATCCGGGGCTTGAGTTT
GCCGCCTCATTGAGTTTGGACATGACCGATGGCTCCTCCGCCTACGACGA
GATGAAGTTTCTCAGCGTGGACGTGGACCAGTTCACGATCGACAGCTTCA
AGGCGGACTGCATTCTGAGCATGGAGCAGTCCCAGATGCAGGCCTACGGC
GGTCACTCCCAGCTGGTCGGATCATCCAATGAACTGTGCCTGGACGGGAT
TGGCATGTCCTCCTTTGGCATGGAAGAGGGTGAGCCCAAGTCGCCTCCCT
CTCTTTTGGTGCTGGACAAGTCGCTGCCCTCTTTGAGCATAGGCGTGGAA
GGAATCGCTGATCTCGTGGAGCAACTGCATCATCACCAGCATGAGGGCGG
CCCAGTGGGCGGTGGTGTCATCACTGGCGATGTCATGTGAAAGCTTTCTA
GACCAT
BS17990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pph13-RA | 1074 | CG2819-PA | 1..1074 | 17..1090 | 5370 | 100 | Plus |
al-RA | 1227 | CG3935-PA | 293..435 | 84..226 | 265 | 79 | Plus |
CG11294-RB | 786 | CG11294-PB | 98..247 | 72..221 | 255 | 78 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pph13-RA | 1880 | CG2819-RA | 507..1582 | 16..1091 | 5380 | 100 | Plus |
al-RA | 1806 | CG3935-RA | 703..845 | 84..226 | 265 | 79 | Plus |
CG11294-RB | 1291 | CG11294-RB | 255..404 | 72..221 | 255 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 578483..579251 | 323..1091 | 3845 | 100 | Plus |
2L | 23513712 | 2L | 578152..578421 | 55..324 | 1350 | 100 | Plus |
2L | 23513712 | 2L | 577992..578033 | 16..57 | 210 | 100 | Plus |
3R | 32079331 | 3R | 18237953..18238000 | 176..223 | 210 | 95.8 | Plus |
X | 23542271 | X | 8692707..8692751 | 221..177 | 195 | 95.6 | Minus |
2L | 23513712 | 2L | 584408..584448 | 219..179 | 190 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:05:12 has no hits.
BS17990.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:26 Download gff for
BS17990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pph13-RA | 1..1074 | 17..1090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:47 Download gff for
BS17990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pph13-RA | 506..1578 | 17..1089 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:48 Download gff for
BS17990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pph13-RA | 508..1580 | 17..1089 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:26 Download gff for
BS17990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pph13-RA | 502..1580 | 12..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:23 Download gff for
BS17990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pph13-RA | 508..1580 | 17..1089 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:23 Download gff for
BS17990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 577993..578033 | 17..57 | 100 | -> | Plus |
2L | 578155..578420 | 58..323 | 100 | -> | Plus |
2L | 578484..579249 | 324..1089 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:48 Download gff for
BS17990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 577993..578033 | 17..57 | 100 | -> | Plus |
arm_2L | 578155..578420 | 58..323 | 100 | -> | Plus |
arm_2L | 578484..579249 | 324..1089 | 100 | | Plus |
BS17990.3prime Sequence
802 bp (707 high quality bases) assembled on 2007-05-30
> BS17990.3prime
ATGGTCTAGAAAGCTTTCACATGACATCGCCAGTGATGACACCACCGCCC
ACTGGGCCGCCCTCATGCTGGTGATGATGCAGTTGCTCCACGAGATCAGC
GATTCCTTCCACGCCTATGCTCAAAGAGGGCAGCGACTTGTCCAGCACCA
AAAGAGAGGGAGGCGACTTGGGCTCACCCTCTTCCATGCCAAAGGAGGAC
ATGCCAATCCCGTCCAGGCACAGTTCATTGGATGATCCGACCAGCTGGGA
GTGACCGCCGTAGGCCTGCATCTGGGACTGCTCCATGCTCAGAATGCAGT
CCGCCTTGAAGCTGTCGATCGTGAACTGGTCCACGTCCACGCTGAGAAAC
TTCATCTCGTCGTAGGCGGAGGAGCCATCGGTCATGTCCAAACTCAATGA
GGCGGCAAACTCAAGCCCCGGATGAAGCTGGGGATTGTGCTGCTCCTGCT
GGTGCTGCTGCTGCTGCTGCTGGTGATGACTCGAACTCCCGGCGTGAATC
GGATCGGATGCATGCTGTTGAGGCGGGTGCTGCTGGAGCTGATTGTCGGA
GTCCATCTGCGGGTGTGTCTGCGCTTGCGTTTGCGGAGGATATGTGGACC
ACTCCATGGAGAGGCCACTGCCACCCCGCTCCAGTCCCAAGTGGTCAATG
TTGAGGTTGAGAAATATATTCGGTGACAGCCTAGAGGGCGACATGGCCCC
CGTGCCGTANGAGGCCTTAAGTTCGTTATCAAGGGAGTTCGAGGATTGCG
GTGGGGTGTCCGGCAATAGAGTTCCACCGCCGCCCAGCGCACTATCCAGT
TG
BS17990.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2819-PA | 1074 | Pph13-RA | 289..1074 | 802..17 | 3911 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pph13-RA | 1880 | CG2819-RA | 796..1582 | 802..16 | 3924 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 578483..579251 | 784..16 | 3834 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:49:59 has no hits.
BS17990.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:56:33 Download gff for
BS17990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2819-PA | 289..1074 | 17..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:22:09 Download gff for
BS17990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pph13-RA | 796..1582 | 16..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:20 Download gff for
BS17990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pph13-RA | 796..1582 | 16..802 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:20 Download gff for
BS17990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 578402..578420 | 784..802 | 100 | -> | Minus |
2L | 578484..579251 | 16..783 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:22:09 Download gff for
BS17990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 578402..578420 | 784..802 | 100 | -> | Minus |
arm_2L | 578484..579251 | 16..783 | 99 | | Minus |
BS17990.5prime Sequence
685 bp (662 high quality bases) assembled on 2007-05-30
> BS17990.5prime
GAAGTTATCACTCGACATGGACAAAGGCACAATGAAGCGCAAGCAGCGGA
GATACAGAACCACATTTAACACACTGCAACTGCAGGAGCTGGAAAGGGCG
TTCCAGCGGACACACTATCCGGACGTGTTTTTCCGAGAGGAGCTGGCCGT
GAGGATCGATTTGACGGAGGCGAGGGTGCAGGTGTGGTTCCAGAACCGGC
GGGCCAAGTGGCGCAAGCAGGAGAAGATCGGTGGGCTTGGCGGAGATTAT
AAGGAGGGTGCGTTGGATCTCGACGTGTCCTACGACGACAGCGCCGTCCT
GGGCCAACTGGATAGTGCGCTGGGCGGCGGTGGAACTCTATTGCCGGACA
CCCCACCGCAATCCTCGAACTCCCTTGATAACGAACTTAAGGCCTCCTAC
GGCACGGGGGCCATGTCGCCCTCTAGGCTGTCACCGAATATATTTCTCAA
CCTCAACATTGACCACTTGGGACTGGAGCGGGGTGGCAGTGGCCTCTCCA
TGGAGTGGTCCACATATCCTCCGCAAACGCAAGCGCAGACACACCCGCAG
ATGGACTCCGACAATCAGCTCCAGCAGCACCCGCCTCAACAGCATGCATC
CGATCCGATTCACGCCGGGAGTTCGAGTCATCACCAGCAGCAGCAGCAGC
AGCACCAGCAGGAGCAGCACAATCCCCAGCTTCAT
BS17990.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:56:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2819-PA | 1074 | Pph13-RA | 1..669 | 17..685 | 3345 | 100 | Plus |
CG31240-PA | 1839 | repo-RA | 1042..1085 | 176..219 | 195 | 97.7 | Plus |
CG2851-PA | 1260 | Gsc-RA | 992..1031 | 180..219 | 175 | 97.5 | Plus |
CG11294-PA | 786 | CG11294-RA | 205..247 | 179..221 | 165 | 95.3 | Plus |
CG1447-PB | 957 | Ptx1-RB | 354..390 | 181..217 | 135 | 94.5 | Plus |
CG1447-PA | 1530 | Ptx1-RA | 927..963 | 181..217 | 135 | 94.5 | Plus |
CG1447-PC | 1545 | Ptx1-RC | 942..978 | 181..217 | 135 | 94.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pph13-RA | 1880 | CG2819-RA | 507..1176 | 16..685 | 3350 | 100 | Plus |
al-RA | 1806 | CG3935-RA | 703..845 | 84..226 | 265 | 79 | Plus |
CG11294-RB | 1291 | CG11294-RB | 255..404 | 72..221 | 255 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 578483..578845 | 323..685 | 1815 | 100 | Plus |
2L | 23513712 | 2L | 578152..578421 | 55..324 | 1350 | 100 | Plus |
2L | 23513712 | 2L | 577992..578033 | 16..57 | 210 | 100 | Plus |
3R | 32079331 | 3R | 18237953..18238000 | 176..223 | 210 | 95.8 | Plus |
X | 23542271 | X | 8692707..8692751 | 221..177 | 195 | 95.6 | Minus |
2L | 23513712 | 2L | 584408..584448 | 219..179 | 190 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:18:08 has no hits.
BS17990.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:56:39 Download gff for
BS17990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2819-PA | 1..669 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:04 Download gff for
BS17990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pph13-RA | 504..1176 | 12..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:09 Download gff for
BS17990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pph13-RA | 504..1176 | 12..685 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:09 Download gff for
BS17990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 577989..578033 | 12..57 | 97 | -> | Plus |
2L | 578155..578420 | 58..323 | 100 | -> | Plus |
2L | 578484..578845 | 324..685 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:04 Download gff for
BS17990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 577989..578033 | 12..57 | 97 | -> | Plus |
arm_2L | 578155..578420 | 58..323 | 100 | -> | Plus |
arm_2L | 578484..578845 | 324..685 | 100 | | Plus |
BS17990.pep Sequence
Translation from 16 to 1089
> BS17990.pep
MDKGTMKRKQRRYRTTFNTLQLQELERAFQRTHYPDVFFREELAVRIDLT
EARVQVWFQNRRAKWRKQEKIGGLGGDYKEGALDLDVSYDDSAVLGQLDS
ALGGGGTLLPDTPPQSSNSLDNELKASYGTGAMSPSRLSPNIFLNLNIDH
LGLERGGSGLSMEWSTYPPQTQAQTHPQMDSDNQLQQHPPQQHASDPIHA
GSSSHHQQQQQQHQQEQHNPQLHPGLEFAASLSLDMTDGSSAYDEMKFLS
VDVDQFTIDSFKADCILSMEQSQMQAYGGHSQLVGSSNELCLDGIGMSSF
GMEEGEPKSPPSLLVLDKSLPSLSIGVEGIADLVEQLHHHQHEGGPVGGG
VITGDVM*
BS17990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pph13-PA | 357 | CG2819-PA | 1..357 | 1..357 | 1877 | 100 | Plus |
al-PA | 408 | CG3935-PA | 77..147 | 2..72 | 300 | 77.5 | Plus |
CG11294-PB | 261 | CG11294-PB | 21..247 | 7..278 | 288 | 34.9 | Plus |
CG11294-PA | 261 | CG11294-PA | 21..247 | 7..278 | 288 | 34.9 | Plus |
otp-PF | 313 | CG10036-PF | 5..247 | 2..224 | 283 | 34 | Plus |