Clone BS17993 Report

Search the DGRC for BS17993

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:179
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptRga-RA
Protein status:BS17993.pep: full length peptide match
Sequenced Size:1790

Clone Sequence Records

BS17993.complete Sequence

1790 bp assembled on 2009-12-07

GenBank Submission: KX803096

> BS17993.complete
GAAGTTATCAGTCGACATGGCGAATTTAAATTTTCAACAACCCCCGAGAA
GTATAGCGAACGCGGCGTTAGCTGGCCGGACAACAGGCGGATTCGGTGGT
AGCTCCCTGGCTGGCCATGTGACGCCCACGTCGGGCATGTTTCAAACCGA
CTTCGCCAACTCCTATCCAGGAACGGCGAACTACGGACAGGCGCCGCAGC
AGCAGCAACAACAGCAGCAGCAGCCCCAACTGTCGCCGAACCGGAATGCC
CAGCTGTCGGTCGGCGGACCCGCCATCTCGAGCGGCAACCGCAACGCCAA
CCTCTTCGGCCAGCGTCAGTTTGTGGAGCGGCGAGCCATGCAAGGATTGG
GCAGTGGCCCCATGTCGAACATGGGCAACTTCATGCAGACGGGTCGCGGC
GGCTACGGAACGGGCGGAGGCGGTGGCGGTCCTTTGAATAACTTCCACGT
GTTCGGCGGCGGCGGTGGTAGCGACACCTCCACGCCTGCCCTGCTCGATC
CCACGGAGTTCCCCTCGCTGACGAATGCGCGCGGCCAGAACGACCAGACA
CTGCCCCAATCGAATCCGCTCCAGCCGCCGGGCAGCAAACCCTATGGTAA
TTTCTTTACCTCTTTTGGCATGGTGAAGCAACCGACGTCAGAGCAATCGG
AGTTCACGATGTCTAACGAGGACTTCCCTGCGTTACCGGGCACCCAAAAC
TCGGACGGCACAACGAACGCGGTGGGGAGCGTCGCCGGAACAGGAGGCTC
CGGAGGTGCGTCCACAGAGAACCACTTGGACGGCACGGAAAAGCCGATGA
ATTCGATAGTGGTCAGCGGATCAGCGAGCGGCAGCAGCGGTTCCAACGTC
GGCGTTGTAGGCGGCAATGGTCTCGGTGCCGTTGGCAGTGGTATAGGGGG
CTTGGCAGTAGGCGGCGGCGGAGGAGCTGGTAGCTCAGGAGGCGGAGGAG
TCGGCGGCAATGCAGCCAGCGGCGTTGTCGGCGGGTCCCATGTAGGACTG
GTGGGCAGTAACAGCGGCATTGGCGGCGTCAACAGCGTACCCAACAGCAA
TGCCATGATGGGCGTAGGCGGCGGCCTGGGGAGTGGAAGCGGCTCGTCTG
GGAGCGGAGCGGGCGGCGAGCATCTGAACGATAATTCCAGCAACGATAAA
CTTGTAAAGAGCGGCGTGCAAACTTCGCCAGATGGGAAGGTCACAAACAT
ACCAGCGACCATGGTGAACAACCAGTTCGGCATGGTTGGCCTGCTGACGT
TCATTCGGGCTGCAGAAACGGATCCCAATCTGGTGACGCTCTCCTTGGGT
ACGGATCTCACGGGTTTAGGCCTGAACCTGAACTCGCAGGAGAGCTTGCA
TACAACCTTCGCTGGCCCCTTCGTAGCACAGCCCTGCAGAGCACAAGACG
TTGAGTTCAACGTGCCACCCGAATATCTGATTAACTTTGCGATAAGAGAC
AAACTAACAGCGCCGGTACTGAAAAAGCTGCAAGAAGACCTGCTCTTTTT
CCTTTTTTACACGAACATCGGCGATATGATGCAATTGATGGCAGCTGCTG
AATTGCATAGTCGCGAGTGGCGATACCACGTGGAGGAGAAAATATGGATA
ACTCGAATTCCTGGCATTGATCAATATGAAAAAAATGGTACAAAAGAGCG
CGGCACCTTCTACTACTTTGATGCGCAAAGTTGGAAACGTTTGTCCAAGG
TTTTCCAAATAGATCCCGAGAAATTAGATAAATGTCCCAATATAAGTGCG
TTTATGAATGGACAGTCTGTATAAAAGCTTTCTAGACCAT

BS17993.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rga-RA 1758 CG2161-PA 1..1758 17..1774 8790 100 Plus
Rga-RC 1740 CG2161-PC 1..1740 17..1774 8485 99 Plus
Rga-RB 1740 CG2161-PB 1..1740 17..1774 8485 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rga-RA 2902 CG2161-RA 1047..2806 17..1776 8800 100 Plus
Rga-RC 2514 CG2161-RC 745..2486 17..1776 8495 99 Plus
Rga-RB 2816 CG2161-RB 1047..2788 17..1776 8495 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5608449..5609019 1185..615 2855 100 Minus
3R 32079331 3R 5609632..5609882 614..364 1255 100 Minus
3R 32079331 3R 5607371..5607592 1776..1555 1110 100 Minus
3R 32079331 3R 5610215..5610430 364..149 1080 100 Minus
3R 32079331 3R 5607953..5608158 1389..1184 1030 100 Minus
3R 32079331 3R 5607683..5607851 1555..1387 845 100 Minus
3R 32079331 3R 5610488..5610620 149..17 665 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:41:53 has no hits.

BS17993.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:48 Download gff for BS17993.complete
Subject Subject Range Query Range Percent Splice Strand
Rga-RA 1..1758 17..1774 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:35 Download gff for BS17993.complete
Subject Subject Range Query Range Percent Splice Strand
Rga-RA 1043..2798 17..1772 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:03 Download gff for BS17993.complete
Subject Subject Range Query Range Percent Splice Strand
Rga-RA 1047..2802 17..1772 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:18:48 Download gff for BS17993.complete
Subject Subject Range Query Range Percent Splice Strand
Rga-RA 1043..2808 17..1784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:44 Download gff for BS17993.complete
Subject Subject Range Query Range Percent Splice Strand
Rga-RA 1047..2802 17..1772 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:44 Download gff for BS17993.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5610488..5610620 17..149 100   Minus
3R 5610215..5610429 150..364 100 <- Minus
3R 5607375..5607592 1555..1772 100 <- Minus
3R 5607684..5607848 1390..1554 100 <- Minus
3R 5607953..5608157 1185..1389 100 <- Minus
3R 5608450..5609019 615..1184 100 <- Minus
3R 5609632..5609881 365..614 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:03 Download gff for BS17993.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1433097..1433314 1555..1772 100 <- Minus
arm_3R 1433406..1433570 1390..1554 100 <- Minus
arm_3R 1433675..1433879 1185..1389 100 <- Minus
arm_3R 1434172..1434741 615..1184 100 <- Minus
arm_3R 1435354..1435603 365..614 100 <- Minus
arm_3R 1435937..1436151 150..364 100 <- Minus
arm_3R 1436210..1436342 17..149 100   Minus

BS17993.3prime Sequence

762 bp (659 high quality bases) assembled on 2007-05-30

> BS17993.3prime
ATGGTCTAGAAAGCTTTTATCCTGACTGGCCATTCATAAACGCACTTATA
TTGGGACATTTATCTAATTTCTCGGGATCTATTTGGAAAACCTTGGCCAA
ACGTTTCCAACTTTGCGCATCAAAGTAGTAGAAGGTGCCGCGCTCTTTTG
TACCATTTTTTTCATATTGATCAATGCCAGGAATTCGAGTTATCCATATT
TTCTCCTCCACGTGGTATCGCCACTCGCGACTATGCAATTCAGCAGCTGC
CATCAATTGCATCATATCGCCGATGTTCGTGTAAAAAAGGAAAAAGAGCA
GGTCTTCTTGCAGCTTTTTCAGTACCGGCGCTGTTAGTTTGTCTCTTATC
GCAAAGTTAATCAGATATTCGGGTGGCACGTTGAACTCAACGTCTTGTGC
TCTGCAGGGCTGTGCTACGAAGGGGCCAGCGAAGGTTGTATGCAAGCTCT
CCTGCGAGTTCAGGTTCAGGCCTAAACCCGTGAGATCCGTACCCAAGGAG
AGCGTCACCAGATTGGGATCCGTTTCTGCAGCCCGAATGAACGTCAGCAG
GCCAACCATGCCGAACTGGTTGTTCACCATGGTCGCTGGTATGTTTGTGA
CCTTCCCATCTGGCGAAGTTTGCACGCCGCTCTTTACAAGTTTATCGTTG
CTGGAATTATCGTTCAGATGCTCGCCGCCCGCTCCGCTCCCAGACGAGCC
GCTTCCACTCCCCCAGCCGCCGCCTACGCCCATCATGGCATTGCTGTTGG
GTACGCTGTTGA

BS17993.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2161-PA 1758 Rga-RA 1013..1751 762..24 3595 99.4 Minus
CG2161-PB 1740 Rga-RB 995..1733 762..24 3595 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rga-RC 2514 CG2161-RC 1739..2486 762..15 3650 99.2 Minus
Rga-RB 2816 CG2161-RB 2041..2788 762..15 3650 99.2 Minus
Rga-RA 2902 CG2161-RA 2059..2806 762..15 3650 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5607371..5607592 15..236 1050 98.2 Plus
3R 32079331 3R 5607953..5608158 402..607 1030 100 Plus
3R 32079331 3R 5607683..5607851 236..404 845 100 Plus
3R 32079331 3R 5608449..5608605 606..762 755 98.7 Plus
Blast to na_te.dros performed on 2015-02-12 16:37:53 has no hits.

BS17993.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:03 Download gff for BS17993.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2161-PB 996..1740 17..761 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:39 Download gff for BS17993.3prime
Subject Subject Range Query Range Percent Splice Strand
Rga-RA 2060..2808 11..761 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:42 Download gff for BS17993.3prime
Subject Subject Range Query Range Percent Splice Strand
Rga-RA 2060..2808 11..761 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:42 Download gff for BS17993.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5607369..5607592 11..236 97 <- Plus
3R 5607684..5607848 237..401 100 <- Plus
3R 5607953..5608157 402..606 100 <- Plus
3R 5608450..5608604 607..761 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:39 Download gff for BS17993.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1433406..1433570 237..401 100 <- Plus
arm_3R 1434172..1434326 607..761 98   Plus
arm_3R 1433675..1433879 402..606 100 <- Plus
arm_3R 1433091..1433314 11..236 97 <- Plus

BS17993.5prime Sequence

802 bp (715 high quality bases) assembled on 2007-05-30

> BS17993.5prime
GAAGTTATCACTCGACATGGCGAATTTAAATTTTCAACAACCCCCGAGAA
GTATAGCGAACGCGGCGTTAGCTGGCCGGACAACAGGCGGATTCGGTGGT
AGCTCCCTGGCTGGCCATGTGACGCCCACGTCGGGCATGTTTCAAACCGA
CTTCGCCAACTCCTATCCAGGAACGGCGAACTACGGACAGGCGCCGCAGC
AGCAGCAACAACAGCAGCAGCAGCCCCAACTGTCGCCGAACCGGAATGCC
CAGCTGTCGGTCGGCGGACCCGCCATCTCGAGCGGCAACCGCAACGCCAA
CCTCTTCGGCCAGCGTCAGTTTGTGGAGCGGCGAGCCATGCAAGGATTGG
GCAGTGGCCCCATGTCGAACATGGGCAACTTCATGCAGACGGGTCGCGGC
GGCTACGGAACGGGCGGAGGCGGTGGCGGTCCTTTGAATAACTTCCACGT
GTTCGGCGGCGGCGGTGGTAGCGACACCTCCACGCCTGCCCTGCTCGATC
CCACGGAGTTCCCCTCGCTGACGAATGCGCGCGGCCAGAACGACCAGACA
CTGCCCCAATCGAATCCGCTCCAGCCGCCGGGCAGCAAACCCTATGGTAA
TTTCTTTACCTCTTTTGGCATGGTGAAGCAACCGACGTCAGAGCAATCGG
AGTTCACGATGTCTAACGAGGACTTCCCTGCGTTACCGGGCACCCAAAAC
TCGGACGGCACAACGAACGCGGTGGGGAGCGTCGCCGGAACAGGAGGCTC
CGGAGGTGCGTCCACAGAGAACCACTTGGACGGCACGGAAAAGCCGATGA
AT

BS17993.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2161-PA 1758 Rga-RA 1..786 17..802 3930 100 Plus
CG2161-PB 1740 Rga-RB 1..580 17..596 2900 100 Plus
CG2161-PB 1740 Rga-RB 581..768 615..802 940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Rga-RA 2902 CG2161-RA 1047..1832 17..802 3930 100 Plus
Rga-RC 2514 CG2161-RC 745..1512 17..802 3650 97.7 Plus
Rga-RB 2816 CG2161-RB 1047..1814 17..802 3650 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5609632..5609882 614..364 1255 100 Minus
3R 32079331 3R 5610215..5610430 364..149 1080 100 Minus
3R 32079331 3R 5608832..5609019 802..615 940 100 Minus
3R 32079331 3R 5610488..5610620 149..17 665 100 Minus
Blast to na_te.dros performed on 2015-02-05 14:02:12 has no hits.

BS17993.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:08 Download gff for BS17993.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2161-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:17 Download gff for BS17993.5prime
Subject Subject Range Query Range Percent Splice Strand
Rga-RA 1047..1832 17..802 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:16:36 Download gff for BS17993.5prime
Subject Subject Range Query Range Percent Splice Strand
Rga-RA 1047..1832 17..802 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:16:36 Download gff for BS17993.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5608832..5609019 615..802 100 <- Minus
3R 5609632..5609881 365..614 100 <- Minus
3R 5610215..5610429 150..364 100 <- Minus
3R 5610488..5610620 17..149 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:17 Download gff for BS17993.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1434554..1434741 615..802 100 <- Minus
arm_3R 1435354..1435603 365..614 100 <- Minus
arm_3R 1435937..1436151 150..364 100 <- Minus
arm_3R 1436210..1436342 17..149 100   Minus

BS17993.pep Sequence

Translation from 16 to 1773

> BS17993.pep
MANLNFQQPPRSIANAALAGRTTGGFGGSSLAGHVTPTSGMFQTDFANSY
PGTANYGQAPQQQQQQQQQPQLSPNRNAQLSVGGPAISSGNRNANLFGQR
QFVERRAMQGLGSGPMSNMGNFMQTGRGGYGTGGGGGGPLNNFHVFGGGG
GSDTSTPALLDPTEFPSLTNARGQNDQTLPQSNPLQPPGSKPYGNFFTSF
GMVKQPTSEQSEFTMSNEDFPALPGTQNSDGTTNAVGSVAGTGGSGGAST
ENHLDGTEKPMNSIVVSGSASGSSGSNVGVVGGNGLGAVGSGIGGLAVGG
GGGAGSSGGGGVGGNAASGVVGGSHVGLVGSNSGIGGVNSVPNSNAMMGV
GGGLGSGSGSSGSGAGGEHLNDNSSNDKLVKSGVQTSPDGKVTNIPATMV
NNQFGMVGLLTFIRAAETDPNLVTLSLGTDLTGLGLNLNSQESLHTTFAG
PFVAQPCRAQDVEFNVPPEYLINFAIRDKLTAPVLKKLQEDLLFFLFYTN
IGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGTFYY
FDAQSWKRLSKVFQIDPEKLDKCPNISAFMNGQSV*

BS17993.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rga-PA 585 CG2161-PA 1..585 1..585 3067 100 Plus
Rga-PC 579 CG2161-PC 1..579 1..585 3010 98.8 Plus
Rga-PB 579 CG2161-PB 1..579 1..585 3010 98.8 Plus
CG15262-PA 438 CG15262-PA 223..418 358..572 276 31.2 Plus
caz-PB 399 CG3606-PB 4..349 24..378 196 28.4 Plus