Clone Sequence Records
BS17993.complete Sequence
1790 bp assembled on 2009-12-07
GenBank Submission: KX803096
> BS17993.complete
GAAGTTATCAGTCGACATGGCGAATTTAAATTTTCAACAACCCCCGAGAA
GTATAGCGAACGCGGCGTTAGCTGGCCGGACAACAGGCGGATTCGGTGGT
AGCTCCCTGGCTGGCCATGTGACGCCCACGTCGGGCATGTTTCAAACCGA
CTTCGCCAACTCCTATCCAGGAACGGCGAACTACGGACAGGCGCCGCAGC
AGCAGCAACAACAGCAGCAGCAGCCCCAACTGTCGCCGAACCGGAATGCC
CAGCTGTCGGTCGGCGGACCCGCCATCTCGAGCGGCAACCGCAACGCCAA
CCTCTTCGGCCAGCGTCAGTTTGTGGAGCGGCGAGCCATGCAAGGATTGG
GCAGTGGCCCCATGTCGAACATGGGCAACTTCATGCAGACGGGTCGCGGC
GGCTACGGAACGGGCGGAGGCGGTGGCGGTCCTTTGAATAACTTCCACGT
GTTCGGCGGCGGCGGTGGTAGCGACACCTCCACGCCTGCCCTGCTCGATC
CCACGGAGTTCCCCTCGCTGACGAATGCGCGCGGCCAGAACGACCAGACA
CTGCCCCAATCGAATCCGCTCCAGCCGCCGGGCAGCAAACCCTATGGTAA
TTTCTTTACCTCTTTTGGCATGGTGAAGCAACCGACGTCAGAGCAATCGG
AGTTCACGATGTCTAACGAGGACTTCCCTGCGTTACCGGGCACCCAAAAC
TCGGACGGCACAACGAACGCGGTGGGGAGCGTCGCCGGAACAGGAGGCTC
CGGAGGTGCGTCCACAGAGAACCACTTGGACGGCACGGAAAAGCCGATGA
ATTCGATAGTGGTCAGCGGATCAGCGAGCGGCAGCAGCGGTTCCAACGTC
GGCGTTGTAGGCGGCAATGGTCTCGGTGCCGTTGGCAGTGGTATAGGGGG
CTTGGCAGTAGGCGGCGGCGGAGGAGCTGGTAGCTCAGGAGGCGGAGGAG
TCGGCGGCAATGCAGCCAGCGGCGTTGTCGGCGGGTCCCATGTAGGACTG
GTGGGCAGTAACAGCGGCATTGGCGGCGTCAACAGCGTACCCAACAGCAA
TGCCATGATGGGCGTAGGCGGCGGCCTGGGGAGTGGAAGCGGCTCGTCTG
GGAGCGGAGCGGGCGGCGAGCATCTGAACGATAATTCCAGCAACGATAAA
CTTGTAAAGAGCGGCGTGCAAACTTCGCCAGATGGGAAGGTCACAAACAT
ACCAGCGACCATGGTGAACAACCAGTTCGGCATGGTTGGCCTGCTGACGT
TCATTCGGGCTGCAGAAACGGATCCCAATCTGGTGACGCTCTCCTTGGGT
ACGGATCTCACGGGTTTAGGCCTGAACCTGAACTCGCAGGAGAGCTTGCA
TACAACCTTCGCTGGCCCCTTCGTAGCACAGCCCTGCAGAGCACAAGACG
TTGAGTTCAACGTGCCACCCGAATATCTGATTAACTTTGCGATAAGAGAC
AAACTAACAGCGCCGGTACTGAAAAAGCTGCAAGAAGACCTGCTCTTTTT
CCTTTTTTACACGAACATCGGCGATATGATGCAATTGATGGCAGCTGCTG
AATTGCATAGTCGCGAGTGGCGATACCACGTGGAGGAGAAAATATGGATA
ACTCGAATTCCTGGCATTGATCAATATGAAAAAAATGGTACAAAAGAGCG
CGGCACCTTCTACTACTTTGATGCGCAAAGTTGGAAACGTTTGTCCAAGG
TTTTCCAAATAGATCCCGAGAAATTAGATAAATGTCCCAATATAAGTGCG
TTTATGAATGGACAGTCTGTATAAAAGCTTTCTAGACCAT
BS17993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rga-RA | 1758 | CG2161-PA | 1..1758 | 17..1774 | 8790 | 100 | Plus |
Rga-RC | 1740 | CG2161-PC | 1..1740 | 17..1774 | 8485 | 99 | Plus |
Rga-RB | 1740 | CG2161-PB | 1..1740 | 17..1774 | 8485 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rga-RA | 2902 | CG2161-RA | 1047..2806 | 17..1776 | 8800 | 100 | Plus |
Rga-RC | 2514 | CG2161-RC | 745..2486 | 17..1776 | 8495 | 99 | Plus |
Rga-RB | 2816 | CG2161-RB | 1047..2788 | 17..1776 | 8495 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5608449..5609019 | 1185..615 | 2855 | 100 | Minus |
3R | 32079331 | 3R | 5609632..5609882 | 614..364 | 1255 | 100 | Minus |
3R | 32079331 | 3R | 5607371..5607592 | 1776..1555 | 1110 | 100 | Minus |
3R | 32079331 | 3R | 5610215..5610430 | 364..149 | 1080 | 100 | Minus |
3R | 32079331 | 3R | 5607953..5608158 | 1389..1184 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 5607683..5607851 | 1555..1387 | 845 | 100 | Minus |
3R | 32079331 | 3R | 5610488..5610620 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:41:53 has no hits.
BS17993.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:48 Download gff for
BS17993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rga-RA | 1..1758 | 17..1774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:35 Download gff for
BS17993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rga-RA | 1043..2798 | 17..1772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:03 Download gff for
BS17993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rga-RA | 1047..2802 | 17..1772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:18:48 Download gff for
BS17993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rga-RA | 1043..2808 | 17..1784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:44 Download gff for
BS17993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rga-RA | 1047..2802 | 17..1772 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:44 Download gff for
BS17993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5610488..5610620 | 17..149 | 100 | | Minus |
3R | 5610215..5610429 | 150..364 | 100 | <- | Minus |
3R | 5607375..5607592 | 1555..1772 | 100 | <- | Minus |
3R | 5607684..5607848 | 1390..1554 | 100 | <- | Minus |
3R | 5607953..5608157 | 1185..1389 | 100 | <- | Minus |
3R | 5608450..5609019 | 615..1184 | 100 | <- | Minus |
3R | 5609632..5609881 | 365..614 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:03 Download gff for
BS17993.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1433097..1433314 | 1555..1772 | 100 | <- | Minus |
arm_3R | 1433406..1433570 | 1390..1554 | 100 | <- | Minus |
arm_3R | 1433675..1433879 | 1185..1389 | 100 | <- | Minus |
arm_3R | 1434172..1434741 | 615..1184 | 100 | <- | Minus |
arm_3R | 1435354..1435603 | 365..614 | 100 | <- | Minus |
arm_3R | 1435937..1436151 | 150..364 | 100 | <- | Minus |
arm_3R | 1436210..1436342 | 17..149 | 100 | | Minus |
BS17993.3prime Sequence
762 bp (659 high quality bases) assembled on 2007-05-30
> BS17993.3prime
ATGGTCTAGAAAGCTTTTATCCTGACTGGCCATTCATAAACGCACTTATA
TTGGGACATTTATCTAATTTCTCGGGATCTATTTGGAAAACCTTGGCCAA
ACGTTTCCAACTTTGCGCATCAAAGTAGTAGAAGGTGCCGCGCTCTTTTG
TACCATTTTTTTCATATTGATCAATGCCAGGAATTCGAGTTATCCATATT
TTCTCCTCCACGTGGTATCGCCACTCGCGACTATGCAATTCAGCAGCTGC
CATCAATTGCATCATATCGCCGATGTTCGTGTAAAAAAGGAAAAAGAGCA
GGTCTTCTTGCAGCTTTTTCAGTACCGGCGCTGTTAGTTTGTCTCTTATC
GCAAAGTTAATCAGATATTCGGGTGGCACGTTGAACTCAACGTCTTGTGC
TCTGCAGGGCTGTGCTACGAAGGGGCCAGCGAAGGTTGTATGCAAGCTCT
CCTGCGAGTTCAGGTTCAGGCCTAAACCCGTGAGATCCGTACCCAAGGAG
AGCGTCACCAGATTGGGATCCGTTTCTGCAGCCCGAATGAACGTCAGCAG
GCCAACCATGCCGAACTGGTTGTTCACCATGGTCGCTGGTATGTTTGTGA
CCTTCCCATCTGGCGAAGTTTGCACGCCGCTCTTTACAAGTTTATCGTTG
CTGGAATTATCGTTCAGATGCTCGCCGCCCGCTCCGCTCCCAGACGAGCC
GCTTCCACTCCCCCAGCCGCCGCCTACGCCCATCATGGCATTGCTGTTGG
GTACGCTGTTGA
BS17993.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2161-PA | 1758 | Rga-RA | 1013..1751 | 762..24 | 3595 | 99.4 | Minus |
CG2161-PB | 1740 | Rga-RB | 995..1733 | 762..24 | 3595 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rga-RC | 2514 | CG2161-RC | 1739..2486 | 762..15 | 3650 | 99.2 | Minus |
Rga-RB | 2816 | CG2161-RB | 2041..2788 | 762..15 | 3650 | 99.2 | Minus |
Rga-RA | 2902 | CG2161-RA | 2059..2806 | 762..15 | 3650 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5607371..5607592 | 15..236 | 1050 | 98.2 | Plus |
3R | 32079331 | 3R | 5607953..5608158 | 402..607 | 1030 | 100 | Plus |
3R | 32079331 | 3R | 5607683..5607851 | 236..404 | 845 | 100 | Plus |
3R | 32079331 | 3R | 5608449..5608605 | 606..762 | 755 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:37:53 has no hits.
BS17993.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:03 Download gff for
BS17993.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2161-PB | 996..1740 | 17..761 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:39 Download gff for
BS17993.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rga-RA | 2060..2808 | 11..761 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:42 Download gff for
BS17993.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rga-RA | 2060..2808 | 11..761 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:42 Download gff for
BS17993.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5607369..5607592 | 11..236 | 97 | <- | Plus |
3R | 5607684..5607848 | 237..401 | 100 | <- | Plus |
3R | 5607953..5608157 | 402..606 | 100 | <- | Plus |
3R | 5608450..5608604 | 607..761 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:39 Download gff for
BS17993.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1433406..1433570 | 237..401 | 100 | <- | Plus |
arm_3R | 1434172..1434326 | 607..761 | 98 | | Plus |
arm_3R | 1433675..1433879 | 402..606 | 100 | <- | Plus |
arm_3R | 1433091..1433314 | 11..236 | 97 | <- | Plus |
BS17993.5prime Sequence
802 bp (715 high quality bases) assembled on 2007-05-30
> BS17993.5prime
GAAGTTATCACTCGACATGGCGAATTTAAATTTTCAACAACCCCCGAGAA
GTATAGCGAACGCGGCGTTAGCTGGCCGGACAACAGGCGGATTCGGTGGT
AGCTCCCTGGCTGGCCATGTGACGCCCACGTCGGGCATGTTTCAAACCGA
CTTCGCCAACTCCTATCCAGGAACGGCGAACTACGGACAGGCGCCGCAGC
AGCAGCAACAACAGCAGCAGCAGCCCCAACTGTCGCCGAACCGGAATGCC
CAGCTGTCGGTCGGCGGACCCGCCATCTCGAGCGGCAACCGCAACGCCAA
CCTCTTCGGCCAGCGTCAGTTTGTGGAGCGGCGAGCCATGCAAGGATTGG
GCAGTGGCCCCATGTCGAACATGGGCAACTTCATGCAGACGGGTCGCGGC
GGCTACGGAACGGGCGGAGGCGGTGGCGGTCCTTTGAATAACTTCCACGT
GTTCGGCGGCGGCGGTGGTAGCGACACCTCCACGCCTGCCCTGCTCGATC
CCACGGAGTTCCCCTCGCTGACGAATGCGCGCGGCCAGAACGACCAGACA
CTGCCCCAATCGAATCCGCTCCAGCCGCCGGGCAGCAAACCCTATGGTAA
TTTCTTTACCTCTTTTGGCATGGTGAAGCAACCGACGTCAGAGCAATCGG
AGTTCACGATGTCTAACGAGGACTTCCCTGCGTTACCGGGCACCCAAAAC
TCGGACGGCACAACGAACGCGGTGGGGAGCGTCGCCGGAACAGGAGGCTC
CGGAGGTGCGTCCACAGAGAACCACTTGGACGGCACGGAAAAGCCGATGA
AT
BS17993.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2161-PA | 1758 | Rga-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
CG2161-PB | 1740 | Rga-RB | 1..580 | 17..596 | 2900 | 100 | Plus |
CG2161-PB | 1740 | Rga-RB | 581..768 | 615..802 | 940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rga-RA | 2902 | CG2161-RA | 1047..1832 | 17..802 | 3930 | 100 | Plus |
Rga-RC | 2514 | CG2161-RC | 745..1512 | 17..802 | 3650 | 97.7 | Plus |
Rga-RB | 2816 | CG2161-RB | 1047..1814 | 17..802 | 3650 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5609632..5609882 | 614..364 | 1255 | 100 | Minus |
3R | 32079331 | 3R | 5610215..5610430 | 364..149 | 1080 | 100 | Minus |
3R | 32079331 | 3R | 5608832..5609019 | 802..615 | 940 | 100 | Minus |
3R | 32079331 | 3R | 5610488..5610620 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 14:02:12 has no hits.
BS17993.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:08 Download gff for
BS17993.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2161-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:17 Download gff for
BS17993.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rga-RA | 1047..1832 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:16:36 Download gff for
BS17993.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rga-RA | 1047..1832 | 17..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:16:36 Download gff for
BS17993.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5608832..5609019 | 615..802 | 100 | <- | Minus |
3R | 5609632..5609881 | 365..614 | 100 | <- | Minus |
3R | 5610215..5610429 | 150..364 | 100 | <- | Minus |
3R | 5610488..5610620 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:17 Download gff for
BS17993.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1434554..1434741 | 615..802 | 100 | <- | Minus |
arm_3R | 1435354..1435603 | 365..614 | 100 | <- | Minus |
arm_3R | 1435937..1436151 | 150..364 | 100 | <- | Minus |
arm_3R | 1436210..1436342 | 17..149 | 100 | | Minus |
BS17993.pep Sequence
Translation from 16 to 1773
> BS17993.pep
MANLNFQQPPRSIANAALAGRTTGGFGGSSLAGHVTPTSGMFQTDFANSY
PGTANYGQAPQQQQQQQQQPQLSPNRNAQLSVGGPAISSGNRNANLFGQR
QFVERRAMQGLGSGPMSNMGNFMQTGRGGYGTGGGGGGPLNNFHVFGGGG
GSDTSTPALLDPTEFPSLTNARGQNDQTLPQSNPLQPPGSKPYGNFFTSF
GMVKQPTSEQSEFTMSNEDFPALPGTQNSDGTTNAVGSVAGTGGSGGAST
ENHLDGTEKPMNSIVVSGSASGSSGSNVGVVGGNGLGAVGSGIGGLAVGG
GGGAGSSGGGGVGGNAASGVVGGSHVGLVGSNSGIGGVNSVPNSNAMMGV
GGGLGSGSGSSGSGAGGEHLNDNSSNDKLVKSGVQTSPDGKVTNIPATMV
NNQFGMVGLLTFIRAAETDPNLVTLSLGTDLTGLGLNLNSQESLHTTFAG
PFVAQPCRAQDVEFNVPPEYLINFAIRDKLTAPVLKKLQEDLLFFLFYTN
IGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGTFYY
FDAQSWKRLSKVFQIDPEKLDKCPNISAFMNGQSV*
BS17993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rga-PA | 585 | CG2161-PA | 1..585 | 1..585 | 3067 | 100 | Plus |
Rga-PC | 579 | CG2161-PC | 1..579 | 1..585 | 3010 | 98.8 | Plus |
Rga-PB | 579 | CG2161-PB | 1..579 | 1..585 | 3010 | 98.8 | Plus |
CG15262-PA | 438 | CG15262-PA | 223..418 | 358..572 | 276 | 31.2 | Plus |
caz-PB | 399 | CG3606-PB | 4..349 | 24..378 | 196 | 28.4 | Plus |