Clone Sequence Records
BS17994.complete Sequence
1616 bp assembled on 2009-12-07
GenBank Submission: KX805535
> BS17994.complete
GAAGTTATCAGTCGACATGTCTTTTATGAACCCCGTGGATATGGTGGATG
AGGACGCCGCCGACCTGCAGTTTCCCAAAGTTGAGCCACTGGGGCCACAG
GTTAAGCGGTTCATCCATGCACATCAGAATGAACACACCAGGAACTCCAT
GGTTTTGTATAATCCGCACACGTTGCACAGGTACTTGGAGGAGATGGAGG
AAAAGACGCGGGACCAGAATAGCAGTGTTCCATCGGCTACAAAGGATGCC
AATCGATGTGCCACATGTCGCTGCAGTCTCACAGAGCCGTACATTAAGTG
CTCCGAGTGCCTCGACACCCTGCTCTGCCTGCAATGTTTCTCACGTGGAA
AGGAGGCCTTTTCTCACCGCAATAACCACGCTTACATCATAGTCCGCGAC
AACATACAGGTGTTCGCCGATGAGCCACACTGGACGGCACGGGACGAGCG
CATACTGCTGAAAACACTTCGCACCCACGGCTATGGCAACTGGGAGGCGG
TCTCCCAGGCTCTGGACCAGCGCCACGAACCCGCAGAAGTGCGACGTCAC
TACCACGATTGCTACTTTGGCGGGATATTCGAGCGGCTCCTTAATCTGAA
GCATGCGAGGGACAGCTATGTGCCCGAACGAATGCCGTATGTCTTCAAAA
TGCGCAGCTTGGATCCACCACGTCATGACGACATCGCCTCCATGCAGTTC
AGACTGAGCGCAGGCTACCGCTGTGCAAGAGGAGACTTCGATACTCCGTA
CGACACCTCAGCAGAGAGTCTGCTATCTATTATGGTGGATCATAGGGGCA
GGGATGACGACAACGAGGCGTCTGAGAGTGAGTTTGAGCGCGAAGTGACA
GAGGAATTGCAACTCGGACTAGTTCGGGCATACAACAATCGCCTCAGAGA
GCGCCAGCGTCGTTACAAGATAATGAGGCAACACGGTCTCATAATGCCCA
ATCGCACCGTCAGCTGGATTTCCAAGTACGTGCACGCCTTTGGCAGCGAT
GCGAGTTGCATGCGTTTCTTGGGCTTCATGCAGATCTGTCCTGACCCCAT
TAAGTTCGATATGCTGTTGGAGTCTCTGCGTTATTATCGGGAGCTGCATA
GCCAGCTGCACAAGCTATACGATCTGCGGGAGCACGGCGTTCGCACTCTT
TCCGGAGCAAAACTATATGCCCGCTTGAGCAAAGAACGTCAGCAGGCTCA
GCGAGATTACAGCAGGCTGAAGCAAACAGATGCTTTCGACTGGCAGCAAT
TGGTGCAGCATTACGAGAGCAACAGGAGCGGTGATCCTGGTCCCCTGGCC
ATTAACTCAAAGTTATATGTGATGAACACGCGTCGAAAGGCTAGTCCCAT
TGAGATTGGAGATCTGCCTGGTTACTCCAAACTGGATGATGGCGAGCGAA
AGTTGTGCAGTGTGGCTCGTCTGGTTCCGCAGTCGTACTTGGACTACAAG
AATCAACTCGTTACGGAGCAAGCAAAGCTCGGATATCTACGGCTAGCCGA
TGCGCGACGTCTCATCAAAATTGACGTGAACAAAACGCGTCAGATTTACG
ATTTTCTGCTGGAACATGGCCATATCAGCAGACCACCGTCCTATGGCTAG
AAGCTTTCTAGACCAT
BS17994.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2a-RG | 1584 | CG43663-PG | 1..1584 | 17..1600 | 7710 | 99.1 | Plus |
| Ada2a-RC | 1584 | CG43663-PC | 1..1584 | 17..1600 | 7710 | 99.1 | Plus |
| Ada2a-RE | 1629 | CG43663-PE | 108..1629 | 79..1600 | 7400 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2a-RG | 2158 | CG43663-RG | 108..1691 | 17..1600 | 7710 | 99.1 | Plus |
| Ada2a-RC | 2340 | CG43663-RC | 108..1691 | 17..1600 | 7710 | 99.1 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 215..1736 | 79..1600 | 7400 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18254375..18255193 | 897..79 | 4005 | 99.3 | Minus |
| 3R | 32079331 | 3R | 18253853..18254319 | 1361..895 | 2275 | 99.1 | Minus |
| 3R | 32079331 | 3R | 18253554..18253794 | 1600..1360 | 1145 | 98.3 | Minus |
| 3R | 32079331 | 3R | 18255317..18255380 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:43:15 has no hits.
BS17994.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:28 Download gff for
BS17994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RE | 1..63 | 17..80 | 98 | -> | Plus |
| Rpb4-RE | 110..1629 | 81..1600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:00 Download gff for
BS17994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RE | 85..147 | 17..80 | 98 | -> | Plus |
| Rpb4-RE | 194..1713 | 81..1600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:47 Download gff for
BS17994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RC | 108..1691 | 17..1600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:28 Download gff for
BS17994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RE | 70..147 | 3..80 | 92 | -> | Plus |
| Rpb4-RE | 194..1717 | 81..1605 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:15 Download gff for
BS17994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RC | 108..1691 | 17..1600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:15 Download gff for
BS17994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18253554..18253792 | 1362..1600 | 98 | <- | Minus |
| 3R | 18253853..18254316 | 898..1361 | 99 | <- | Minus |
| 3R | 18254375..18255191 | 81..897 | 99 | <- | Minus |
| 3R | 18255317..18255380 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:47 Download gff for
BS17994.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14079276..14079514 | 1362..1600 | 98 | <- | Minus |
| arm_3R | 14079575..14080038 | 898..1361 | 99 | <- | Minus |
| arm_3R | 14080097..14080913 | 81..897 | 99 | <- | Minus |
| arm_3R | 14081039..14081102 | 17..80 | 100 | | Minus |
BS17994.3prime Sequence
835 bp (721 high quality bases) assembled on 2007-05-30
> BS17994.3prime
ATGGTCTAGAAAGCTTCTAGCCATAGGACGGTGGTCTGCTGATATGGCCA
TGTTCCAGCAGAAAATCGTAAATCTGACGCGTTTTGTTCACGTCAATTTT
GATGAGACGTCGCGCATCGGCTAGCCGTAGATATCCGAGCTTTGCTTGCT
CCGTAACGAGTTGATTCTTGTAGTCCAAGTACGACTGCGGAACCAGACGA
GCCACACTGCACAACTTTCGCTCGCCATCATCCAGTTTGGAGTAACCAGG
CAGATCTCCAATCTCAATGGGACTAGCCTTTCGACGCGTGTTCATCACAT
ATAACTTTGAGTTAATGGCCAGGGGACCAGGATCACCGCTCCTGTTGCTC
TCGTAATGCTGCACCAATTGCTGCCAGTCGAAAGCATCTGTTTGCTTCAG
CCTGCTGTAATCTCGCTGAGCCTGCTGACGTTCTTTGCTCAAGCGGGCAT
ATAGTTTTGCTCCGGAAAGAGTGCGAACGCCGTGCTCCCGCAGATCGTAT
AGCTTGTGCAGCTGGCTATGCAGCTCCCGATAATAACGCAGAGACTCCAA
CAGCATATCGAACTTAATGGGGTCAGGACAGATCTGCATGAAGCCCAAGA
AACGCATGCAACTCGCATCGCTGCCAAAGGCGTGCACGTACTTGGAAATC
CAGCTGACGGTGCGATTGGGCATTATGAGACCGTGTTGCCTCATTATCTT
GTAACGACGCTGGCGCTCTCTGAGGCGATTGTTGTATGCCCGAACTAGTC
CGAGTTGCAATTCCTCTGTCACTTCGCGCTCAAACTCACTCTCAGACGCC
TCGTTGTCGTCATCCCTGCCCCTATGATCCACCAT
BS17994.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33520-PC | 1584 | Rpb4-RC | 766..1584 | 835..17 | 3895 | 99 | Minus |
| CG33520-PE | 1629 | Rpb4-RE | 811..1629 | 835..17 | 3895 | 99 | Minus |
| CG33520-PB | 1689 | Rpb4-RB | 811..1390 | 835..256 | 2800 | 99.3 | Minus |
| CG33520-PA | 1644 | Rpb4-RA | 766..1345 | 835..256 | 2800 | 99.3 | Minus |
| CG33520-PB | 1689 | Rpb4-RB | 1449..1689 | 257..17 | 1105 | 98.3 | Minus |
| CG33520-PA | 1644 | Rpb4-RA | 1404..1644 | 257..17 | 1105 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2a-RG | 2158 | CG43663-RG | 873..1691 | 835..17 | 3975 | 99 | Minus |
| Ada2a-RE | 2385 | CG43663-RE | 918..1736 | 835..17 | 3975 | 99 | Minus |
| Ada2a-RC | 2340 | CG43663-RC | 873..1691 | 835..17 | 3975 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18253853..18254319 | 256..722 | 2275 | 99.1 | Plus |
| 3R | 32079331 | 3R | 18253554..18253794 | 17..257 | 1145 | 98.3 | Plus |
| 3R | 32079331 | 3R | 18254375..18254490 | 720..835 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:08:13 has no hits.
BS17994.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:12 Download gff for
BS17994.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PE | 811..1629 | 17..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:11:56 Download gff for
BS17994.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RC | 873..1695 | 12..835 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:56 Download gff for
BS17994.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RC | 873..1695 | 12..835 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:56 Download gff for
BS17994.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18253550..18253792 | 12..255 | 97 | <- | Plus |
| 3R | 18253853..18254316 | 256..719 | 99 | <- | Plus |
| 3R | 18254375..18254490 | 720..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:11:56 Download gff for
BS17994.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14079272..14079514 | 12..255 | 97 | <- | Plus |
| arm_3R | 14079575..14080038 | 256..719 | 99 | <- | Plus |
| arm_3R | 14080097..14080212 | 720..835 | 100 | | Plus |
BS17994.5prime Sequence
867 bp (762 high quality bases) assembled on 2007-05-30
> BS17994.5prime
GAAGTTATCACTCGACATGTCTTTTATGAACCCCGTGGATATGGTGGATG
AGGACGCCGCCGACCTGCAGTTTCCCAAAGTTGAGCCACTGGGGCCACAG
GTTAAGCGGTTCATCCATGCACATCAGAATGAACACACCAGGAACTCCAT
GGTTTTGTATAATCCGCACACGTTGCACAGGTACTTGGAGGAGATGGAGG
AAAAGACGCGGGACCAGAATAGCAGTGTTCCATCGGCTACAAAGGATGCC
AATCGATGTGCCACATGTCGCTGCAGTCTCACAGAGCCGTACATTAAGTG
CTCCGAGTGCCTCGACACCCTGCTCTGCCTGCAATGTTTCTCACGTGGAA
AGGAGGCCTTTTCTCACCGCAATAACCACGCTTACATCATAGTCCGCGAC
AACATACAGGTGTTCGCCGATGAGCCACACTGGACGGCACGGGACGAGCG
CATACTGCTGAAAACACTTCGCACCCACGGCTATGGCAACTGGGAGGCGG
TCTCCCAGGCTCTGGACCAGCGCCACGAACCCGCAGAAGTGCGACGTCAC
TACCACGATTGCTACTTTGGCGGGATATTCGAGCGGCTCCTTAATCTGAA
GCATGCGAGGGACAGCTATGTGCCCGAACGAATGCCGTATGTCTTCAAAA
TGCGCAGCTTGGATCCACCACGTCATGACGACATCGCCTCCATGCAGTTC
AGACTGAGCGCAGGCTACCGCTGTGCAAGAGGAGACTTCGATACTCCGTA
CGACACCTCAGCAGAGAGTCTGCTATCTATTATGGTGGATCATAGGGGCA
GGGATGACGACAACGAGGCGTCTGAGAGTGAGTTTGAGCGCGAATTGACA
GAGGATTTGCAACTCGG
BS17994.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33520-PC | 1584 | Rpb4-RC | 1..851 | 17..867 | 4055 | 99 | Plus |
| CG33520-PA | 1644 | Rpb4-RA | 1..851 | 17..867 | 4055 | 99 | Plus |
| CG33520-PB | 1689 | Rpb4-RB | 108..896 | 79..867 | 3745 | 98.9 | Plus |
| CG33520-PE | 1629 | Rpb4-RE | 108..896 | 79..867 | 3745 | 98.9 | Plus |
| CG33520-PB | 1689 | Rpb4-RB | 1..65 | 17..81 | 325 | 100 | Plus |
| CG33520-PE | 1629 | Rpb4-RE | 1..65 | 17..81 | 325 | 100 | Plus |
| CG33520-PD | 453 | Rpb4-RD | 1..64 | 17..80 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2a-RG | 2158 | CG43663-RG | 108..958 | 17..867 | 4135 | 99.1 | Plus |
| Ada2a-RC | 2340 | CG43663-RC | 108..958 | 17..867 | 4135 | 99.1 | Plus |
| Ada2a-RA | 2400 | CG43663-RA | 108..958 | 17..867 | 4135 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18254405..18255193 | 867..79 | 3825 | 99 | Minus |
| 3R | 32079331 | 3R | 18255317..18255380 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:08:22 has no hits.
BS17994.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:17 Download gff for
BS17994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PC | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:12:02 Download gff for
BS17994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RA | 93..958 | 3..867 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:16 Download gff for
BS17994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RA | 93..958 | 3..867 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:16 Download gff for
BS17994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18254405..18255191 | 81..867 | 98 | <- | Minus |
| 3R | 18255317..18255395 | 3..80 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:12:02 Download gff for
BS17994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14080127..14080913 | 81..867 | 98 | <- | Minus |
| arm_3R | 14081039..14081117 | 3..80 | 93 | | Minus |
BS17994.pep Sequence
Translation from 16 to 1599
> BS17994.pep
MSFMNPVDMVDEDAADLQFPKVEPLGPQVKRFIHAHQNEHTRNSMVLYNP
HTLHRYLEEMEEKTRDQNSSVPSATKDANRCATCRCSLTEPYIKCSECLD
TLLCLQCFSRGKEAFSHRNNHAYIIVRDNIQVFADEPHWTARDERILLKT
LRTHGYGNWEAVSQALDQRHEPAEVRRHYHDCYFGGIFERLLNLKHARDS
YVPERMPYVFKMRSLDPPRHDDIASMQFRLSAGYRCARGDFDTPYDTSAE
SLLSIMVDHRGRDDDNEASESEFEREVTEELQLGLVRAYNNRLRERQRRY
KIMRQHGLIMPNRTVSWISKYVHAFGSDASCMRFLGFMQICPDPIKFDML
LESLRYYRELHSQLHKLYDLREHGVRTLSGAKLYARLSKERQQAQRDYSR
LKQTDAFDWQQLVQHYESNRSGDPGPLAINSKLYVMNTRRKASPIEIGDL
PGYSKLDDGERKLCSVARLVPQSYLDYKNQLVTEQAKLGYLRLADARRLI
KIDVNKTRQIYDFLLEHGHISRPPSYG*
BS17994.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2a-PG | 527 | CG43663-PG | 1..527 | 1..527 | 2810 | 100 | Plus |
| Ada2a-PC | 527 | CG43663-PC | 1..527 | 1..527 | 2810 | 100 | Plus |
| Ada2a-PE | 542 | CG43663-PE | 1..542 | 1..527 | 2784 | 97.2 | Plus |
| Ada2a-PA | 547 | CG43663-PA | 1..547 | 1..527 | 2779 | 96.3 | Plus |
| Ada2a-PB | 562 | CG43663-PB | 1..562 | 1..527 | 2753 | 93.8 | Plus |
