Clone Sequence Records
BS17995.3prime Sequence
767 bp (736 high quality bases) assembled on 2007-05-30
> BS17995.3prime
ATGGTCTAGAAAGCTTTTAGCAGCCCGCCGCATGCGACGCCTCTGCCCAC
GGCTGTAGTCCGTGCAACGCAGCCAGCGGTGCCCCGTTCACGCCCCCCTG
GGAACCCAGGGGTGCCGAAGGAGGCGCGAATCCCTTGCTGATGGCCTCCG
CCTGGAGGGACAGCATCAGTCTGTTCGCCGCCTGCCGCTCCGCCTCGCGC
TCCTCGGCCGTCTGTCGTCTCCACTTGGTGCGTCGGTTCTGGAACCACGT
CTTCACCTGGGCATCGGTCATCTTCAGTCCGCGGGCCAGTGCCGCTCGCT
CCGCGGATGCCAGATACTTTTGCTTGTGGAAGCGCTTCTCCAACTCGGCC
ACCTGGATGCGCGTGAAGGATGTGCGTGGCTTTTTCCTCTTCGGCGGCGT
GCGATTCTGGTAGGGATGTCCGATCCGTCGGGCGATCGGAAAGGCAGCTG
CCAACCGATCCTTGACCGCCTGATGTGCCAGCGCCGCGTGATGCAGTGGC
GGTAGTGCCCAGGTGAGCGGCGTTCTCTGGGGCGGTACACGTAGCACATG
ACCGCCGGCCGCTGAGGGATAGAGATGCGGATACGAGTATAGTGCTGCGG
CGCTTCCGTATGTCGAGTTGGCGATGCTGGTGGCCAGCTTATAGGCCAGG
TCGTGGTCCTCCTGCTGCAGTAGCTCCTTCTCCTCGCCCTTTTCGCCGCT
GTTGTTGTTGTTGCTGCTGGAGCCCGGACTGCTGCTGAGCAGGTGGTTGT
TGTTGTTGTGGTGGTGG
BS17995.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7937-PA | 1020 | C15-RA | 270..1020 | 767..17 | 3755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
C15-RA | 1856 | CG7937-RA | 542..1292 | 767..17 | 3755 | 100 | Minus |
HHEX-RA | 1267 | CG7056-RA | 922..996 | 289..215 | 180 | 82.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21502350..21502669 | 767..448 | 1600 | 100 | Minus |
3R | 32079331 | 3R | 21507128..21507359 | 450..219 | 1160 | 100 | Minus |
3R | 32079331 | 3R | 21512047..21512250 | 220..17 | 1020 | 100 | Minus |
3R | 32079331 | 3R | 21077133..21077207 | 215..289 | 180 | 82.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:38:28 has no hits.
BS17995.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:22 Download gff for
BS17995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7937-PA | 270..1020 | 17..767 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:46 Download gff for
BS17995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 542..1292 | 17..767 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:09 Download gff for
BS17995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 542..1292 | 17..767 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:09 Download gff for
BS17995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21502350..21502669 | 448..767 | 100 | -> | Minus |
3R | 21507131..21507359 | 219..447 | 100 | -> | Minus |
3R | 21512049..21512250 | 17..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:46 Download gff for
BS17995.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17328072..17328391 | 448..767 | 100 | -> | Minus |
arm_3R | 17332853..17333081 | 219..447 | 100 | -> | Minus |
arm_3R | 17337771..17337972 | 17..218 | 100 | | Minus |
BS17995.5prime Sequence
789 bp (788 high quality bases) assembled on 2007-05-30
> BS17995.5prime
GAAGTTATCCCTCTACATGTCCAGCCACGAGGAGGATGACCATGAGCACG
AGAACGAGCACGGCGAAGAGGTGGAGGAACAGGAGATCCACGTGGATGTG
GACTCGGACTCGCGGATGTCATGTGGCAGCGGATCCGATGTGGATATGGA
CGGCGGCAGCTGCTACGACGAGTCCGAAACGCCATTGAGCGAGTCCCTGC
AGTCGGAGCAGACGCGCTCCTCGTCCAGTGAGAATCTGCCCTTCAGCATA
TCACGCCTGCTATCCAAGCCCTTCGAGACGAGTCACCACCACCACAACAA
CAACAACCACCTGCTCAGCAGCAGTCCGGGCTCCAGCAGCAACAACAACA
ACAGCGGCGAAAAGGGCGAGGAGAAGGAGCTACTGCAGCAGGAGGACCAC
GACCTGGCCTATAAGCTGGCCACCAGCATCGCCAACTCGACATACGGAAG
CGCCGCAGCACTATACTCGTATCCGCATCTCTATCCCTCAGCGGCCGGCG
GTCATGTGCTACGTGTACCGCCCCAGAGAACGCCGCTCACCTGGGCACTA
CCGCCACTGCATCACGCGGCGCTGGCACATCAGGCGGTCAAGGATCGGTT
GGCAGCTGCCTTTCCGATCGCCCGACGGATCGGACATCCCTACCAGAATC
GCACGCCGCCGAAGAGGAAAAAGCCACGCACATCCTTCACGCGCATCCAG
GTGGCCGAGTTGGAGAAGCGCTTCCACAAGCAAAAGTATCTGGCATCCGC
GGAGCGAGCGGCACTGGCCCGCGGACTGAAGATGACCGA
BS17995.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7937-PA | 1020 | C15-RA | 1..773 | 17..789 | 3865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
C15-RA | 1856 | CG7937-RA | 273..1045 | 17..789 | 3865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21502252..21502669 | 188..605 | 2090 | 100 | Plus |
3R | 32079331 | 3R | 21507128..21507314 | 603..789 | 935 | 100 | Plus |
3R | 32079331 | 3R | 21500258..21500430 | 17..189 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:08:31 has no hits.
BS17995.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:26 Download gff for
BS17995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7937-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:12:09 Download gff for
BS17995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 273..1044 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:37 Download gff for
BS17995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 273..1044 | 17..788 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:37 Download gff for
BS17995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21500258..21500430 | 17..189 | 100 | -> | Plus |
3R | 21502254..21502669 | 190..605 | 100 | -> | Plus |
3R | 21507131..21507313 | 606..788 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:12:09 Download gff for
BS17995.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17325980..17326152 | 17..189 | 100 | -> | Plus |
arm_3R | 17327976..17328391 | 190..605 | 100 | -> | Plus |
arm_3R | 17332853..17333035 | 606..788 | 100 | | Plus |
BS17995.complete Sequence
1052 bp assembled on 2010-02-09
GenBank Submission: KX806050
> BS17995.complete
GAAGTTATCAGTCGACATGTCCAGCCACGAGGAGGATGACCATGAGCACG
AGAACGAGCACGGCGAAGAGGTGGAGGAACAGGAGATCCACGTGGATGTG
GACTCGGACTCGCGGATGTCATGTGGCAGCGGATCCGATGTGGATATGGA
CGGCGGCAGCTGCTACGACGAGTCCGAAACGCCATTGAGCGAGTCCCTGC
AGTCGGAGCAGACGCGCTCCTCGTCCAGTGAGAATCTGCCCTTCAGCATA
TCACGCCTGCTATCCAAGCCCTTCGAGACGAGTCACCACCACCACAACAA
CAACAACCACCTGCTCAGCAGCAGTCCGGGCTCCAGCAGCAACAACAACA
ACAGCGGCGAAAAGGGCGAGGAGAAGGAGCTACTGCAGCAGGAGGACCAC
GACCTGGCCTATAAGCTGGCCACCAGCATCGCCAACTCGACATACGGAAG
CGCCGCAGCACTATACTCGTATCCGCATCTCTATCCCTCAGCGGCCGGCG
GTCATGTGCTACGTGTACCGCCCCAGAGAACGCCGCTCACCTGGGCACTA
CCGCCACTGCATCACGCGGCGCTGGCACATCAGGCGGTCAAGGATCGGTT
GGCAGCTGCCTTTCCGATCGCCCGACGGATCGGACATCCCTACCAGAATC
GCACGCCGCCGAAGAGGAAAAAGCCACGCACATCCTTCACGCGCATCCAG
GTGGCCGAGTTGGAGAAGCGCTTCCACAAGCAAAAGTATCTGGCATCCGC
GGAGCGAGCGGCACTGGCCCGCGGACTGAAGATGACCGATGCCCAGGTGA
AGACGTGGTTCCAGAACCGACGCACCAAGTGGAGACGACAGACGGCCGAG
GAGCGCGAGGCGGAGCGGCAGGCGGCGAACAGACTGATGCTGTCCCTCCA
GGCGGAGGCCATCAGCAAGGGATTCGCGCCTCCTTCGGCACCCCTGGGTT
CCCAGGGGGGCGTGAACGGGGCACCGCTGGCTGCGTTGCACGGACTACAG
CCGTGGGCAGAGGCGTCGCATGCGGCGGGCTGCTAAAAGCTTTCTAGACC
AT
BS17995.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
C15-RA | 1020 | CG7937-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
HHEX-RA | 972 | CG7056-PA | 679..753 | 764..838 | 180 | 82.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
C15-RA | 1856 | CG7937-RA | 273..1292 | 17..1036 | 5100 | 100 | Plus |
HHEX-RA | 1267 | CG7056-RA | 922..996 | 764..838 | 180 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21502252..21502669 | 188..605 | 2090 | 100 | Plus |
3R | 32079331 | 3R | 21507128..21507359 | 603..834 | 1160 | 100 | Plus |
3R | 32079331 | 3R | 21512047..21512250 | 833..1036 | 1020 | 100 | Plus |
3R | 32079331 | 3R | 21500258..21500430 | 17..189 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:13:22 has no hits.
BS17995.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:19 Download gff for
BS17995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 1..1020 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:42 Download gff for
BS17995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 4..1021 | 17..1034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:29 Download gff for
BS17995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 273..1290 | 17..1034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:20 Download gff for
BS17995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 2..1023 | 15..1036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:30 Download gff for
BS17995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 273..1290 | 17..1034 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:30 Download gff for
BS17995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21500258..21500430 | 17..189 | 100 | -> | Plus |
3R | 21502254..21502669 | 190..605 | 100 | -> | Plus |
3R | 21507131..21507359 | 606..834 | 100 | -> | Plus |
3R | 21512049..21512248 | 835..1034 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:29 Download gff for
BS17995.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17337771..17337970 | 835..1034 | 100 | | Plus |
arm_3R | 17325980..17326152 | 17..189 | 100 | -> | Plus |
arm_3R | 17327976..17328391 | 190..605 | 100 | -> | Plus |
arm_3R | 17332853..17333081 | 606..834 | 100 | -> | Plus |
BS17995.pep Sequence
Translation from 16 to 1035
> BS17995.pep
MSSHEEDDHEHENEHGEEVEEQEIHVDVDSDSRMSCGSGSDVDMDGGSCY
DESETPLSESLQSEQTRSSSSENLPFSISRLLSKPFETSHHHHNNNNHLL
SSSPGSSSNNNNSGEKGEEKELLQQEDHDLAYKLATSIANSTYGSAAALY
SYPHLYPSAAGGHVLRVPPQRTPLTWALPPLHHAALAHQAVKDRLAAAFP
IARRIGHPYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAAL
ARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLMLSLQAEAIS
KGFAPPSAPLGSQGGVNGAPLAALHGLQPWAEASHAAGC*
BS17995.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
C15-PA | 339 | CG7937-PA | 1..339 | 1..339 | 1779 | 100 | Plus |
Hmx-PE | 592 | CG43748-PE | 313..567 | 50..309 | 242 | 28.6 | Plus |
Hmx-PC | 592 | CG43748-PC | 313..567 | 50..309 | 242 | 28.6 | Plus |
Hmx-PD | 718 | CG43748-PD | 313..567 | 50..309 | 242 | 28.6 | Plus |
CG18599-PA | 475 | CG18599-PA | 90..377 | 5..278 | 209 | 24.2 | Plus |