Clone BS17995 Report

Search the DGRC for BS17995

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:179
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptC15-RA
Protein status:BS17995.pep: full length peptide match
Sequenced Size:1052

Clone Sequence Records

BS17995.3prime Sequence

767 bp (736 high quality bases) assembled on 2007-05-30

> BS17995.3prime
ATGGTCTAGAAAGCTTTTAGCAGCCCGCCGCATGCGACGCCTCTGCCCAC
GGCTGTAGTCCGTGCAACGCAGCCAGCGGTGCCCCGTTCACGCCCCCCTG
GGAACCCAGGGGTGCCGAAGGAGGCGCGAATCCCTTGCTGATGGCCTCCG
CCTGGAGGGACAGCATCAGTCTGTTCGCCGCCTGCCGCTCCGCCTCGCGC
TCCTCGGCCGTCTGTCGTCTCCACTTGGTGCGTCGGTTCTGGAACCACGT
CTTCACCTGGGCATCGGTCATCTTCAGTCCGCGGGCCAGTGCCGCTCGCT
CCGCGGATGCCAGATACTTTTGCTTGTGGAAGCGCTTCTCCAACTCGGCC
ACCTGGATGCGCGTGAAGGATGTGCGTGGCTTTTTCCTCTTCGGCGGCGT
GCGATTCTGGTAGGGATGTCCGATCCGTCGGGCGATCGGAAAGGCAGCTG
CCAACCGATCCTTGACCGCCTGATGTGCCAGCGCCGCGTGATGCAGTGGC
GGTAGTGCCCAGGTGAGCGGCGTTCTCTGGGGCGGTACACGTAGCACATG
ACCGCCGGCCGCTGAGGGATAGAGATGCGGATACGAGTATAGTGCTGCGG
CGCTTCCGTATGTCGAGTTGGCGATGCTGGTGGCCAGCTTATAGGCCAGG
TCGTGGTCCTCCTGCTGCAGTAGCTCCTTCTCCTCGCCCTTTTCGCCGCT
GTTGTTGTTGTTGCTGCTGGAGCCCGGACTGCTGCTGAGCAGGTGGTTGT
TGTTGTTGTGGTGGTGG

BS17995.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7937-PA 1020 C15-RA 270..1020 767..17 3755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
C15-RA 1856 CG7937-RA 542..1292 767..17 3755 100 Minus
HHEX-RA 1267 CG7056-RA 922..996 289..215 180 82.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21502350..21502669 767..448 1600 100 Minus
3R 32079331 3R 21507128..21507359 450..219 1160 100 Minus
3R 32079331 3R 21512047..21512250 220..17 1020 100 Minus
3R 32079331 3R 21077133..21077207 215..289 180 82.7 Plus
Blast to na_te.dros performed on 2015-02-10 22:38:28 has no hits.

BS17995.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:22 Download gff for BS17995.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7937-PA 270..1020 17..767 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:46 Download gff for BS17995.3prime
Subject Subject Range Query Range Percent Splice Strand
C15-RA 542..1292 17..767 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:09 Download gff for BS17995.3prime
Subject Subject Range Query Range Percent Splice Strand
C15-RA 542..1292 17..767 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:09 Download gff for BS17995.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21502350..21502669 448..767 100 -> Minus
3R 21507131..21507359 219..447 100 -> Minus
3R 21512049..21512250 17..218 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:46 Download gff for BS17995.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17328072..17328391 448..767 100 -> Minus
arm_3R 17332853..17333081 219..447 100 -> Minus
arm_3R 17337771..17337972 17..218 100   Minus

BS17995.5prime Sequence

789 bp (788 high quality bases) assembled on 2007-05-30

> BS17995.5prime
GAAGTTATCCCTCTACATGTCCAGCCACGAGGAGGATGACCATGAGCACG
AGAACGAGCACGGCGAAGAGGTGGAGGAACAGGAGATCCACGTGGATGTG
GACTCGGACTCGCGGATGTCATGTGGCAGCGGATCCGATGTGGATATGGA
CGGCGGCAGCTGCTACGACGAGTCCGAAACGCCATTGAGCGAGTCCCTGC
AGTCGGAGCAGACGCGCTCCTCGTCCAGTGAGAATCTGCCCTTCAGCATA
TCACGCCTGCTATCCAAGCCCTTCGAGACGAGTCACCACCACCACAACAA
CAACAACCACCTGCTCAGCAGCAGTCCGGGCTCCAGCAGCAACAACAACA
ACAGCGGCGAAAAGGGCGAGGAGAAGGAGCTACTGCAGCAGGAGGACCAC
GACCTGGCCTATAAGCTGGCCACCAGCATCGCCAACTCGACATACGGAAG
CGCCGCAGCACTATACTCGTATCCGCATCTCTATCCCTCAGCGGCCGGCG
GTCATGTGCTACGTGTACCGCCCCAGAGAACGCCGCTCACCTGGGCACTA
CCGCCACTGCATCACGCGGCGCTGGCACATCAGGCGGTCAAGGATCGGTT
GGCAGCTGCCTTTCCGATCGCCCGACGGATCGGACATCCCTACCAGAATC
GCACGCCGCCGAAGAGGAAAAAGCCACGCACATCCTTCACGCGCATCCAG
GTGGCCGAGTTGGAGAAGCGCTTCCACAAGCAAAAGTATCTGGCATCCGC
GGAGCGAGCGGCACTGGCCCGCGGACTGAAGATGACCGA

BS17995.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7937-PA 1020 C15-RA 1..773 17..789 3865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
C15-RA 1856 CG7937-RA 273..1045 17..789 3865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21502252..21502669 188..605 2090 100 Plus
3R 32079331 3R 21507128..21507314 603..789 935 100 Plus
3R 32079331 3R 21500258..21500430 17..189 865 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:08:31 has no hits.

BS17995.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:26 Download gff for BS17995.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7937-PA 1..772 17..788 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:12:09 Download gff for BS17995.5prime
Subject Subject Range Query Range Percent Splice Strand
C15-RA 273..1044 17..788 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:37 Download gff for BS17995.5prime
Subject Subject Range Query Range Percent Splice Strand
C15-RA 273..1044 17..788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:37 Download gff for BS17995.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21500258..21500430 17..189 100 -> Plus
3R 21502254..21502669 190..605 100 -> Plus
3R 21507131..21507313 606..788 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:12:09 Download gff for BS17995.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17325980..17326152 17..189 100 -> Plus
arm_3R 17327976..17328391 190..605 100 -> Plus
arm_3R 17332853..17333035 606..788 100   Plus

BS17995.complete Sequence

1052 bp assembled on 2010-02-09

GenBank Submission: KX806050

> BS17995.complete
GAAGTTATCAGTCGACATGTCCAGCCACGAGGAGGATGACCATGAGCACG
AGAACGAGCACGGCGAAGAGGTGGAGGAACAGGAGATCCACGTGGATGTG
GACTCGGACTCGCGGATGTCATGTGGCAGCGGATCCGATGTGGATATGGA
CGGCGGCAGCTGCTACGACGAGTCCGAAACGCCATTGAGCGAGTCCCTGC
AGTCGGAGCAGACGCGCTCCTCGTCCAGTGAGAATCTGCCCTTCAGCATA
TCACGCCTGCTATCCAAGCCCTTCGAGACGAGTCACCACCACCACAACAA
CAACAACCACCTGCTCAGCAGCAGTCCGGGCTCCAGCAGCAACAACAACA
ACAGCGGCGAAAAGGGCGAGGAGAAGGAGCTACTGCAGCAGGAGGACCAC
GACCTGGCCTATAAGCTGGCCACCAGCATCGCCAACTCGACATACGGAAG
CGCCGCAGCACTATACTCGTATCCGCATCTCTATCCCTCAGCGGCCGGCG
GTCATGTGCTACGTGTACCGCCCCAGAGAACGCCGCTCACCTGGGCACTA
CCGCCACTGCATCACGCGGCGCTGGCACATCAGGCGGTCAAGGATCGGTT
GGCAGCTGCCTTTCCGATCGCCCGACGGATCGGACATCCCTACCAGAATC
GCACGCCGCCGAAGAGGAAAAAGCCACGCACATCCTTCACGCGCATCCAG
GTGGCCGAGTTGGAGAAGCGCTTCCACAAGCAAAAGTATCTGGCATCCGC
GGAGCGAGCGGCACTGGCCCGCGGACTGAAGATGACCGATGCCCAGGTGA
AGACGTGGTTCCAGAACCGACGCACCAAGTGGAGACGACAGACGGCCGAG
GAGCGCGAGGCGGAGCGGCAGGCGGCGAACAGACTGATGCTGTCCCTCCA
GGCGGAGGCCATCAGCAAGGGATTCGCGCCTCCTTCGGCACCCCTGGGTT
CCCAGGGGGGCGTGAACGGGGCACCGCTGGCTGCGTTGCACGGACTACAG
CCGTGGGCAGAGGCGTCGCATGCGGCGGGCTGCTAAAAGCTTTCTAGACC
AT

BS17995.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
C15-RA 1020 CG7937-PA 1..1020 17..1036 5100 100 Plus
HHEX-RA 972 CG7056-PA 679..753 764..838 180 82.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
C15-RA 1856 CG7937-RA 273..1292 17..1036 5100 100 Plus
HHEX-RA 1267 CG7056-RA 922..996 764..838 180 82.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21502252..21502669 188..605 2090 100 Plus
3R 32079331 3R 21507128..21507359 603..834 1160 100 Plus
3R 32079331 3R 21512047..21512250 833..1036 1020 100 Plus
3R 32079331 3R 21500258..21500430 17..189 865 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:13:22 has no hits.

BS17995.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:19 Download gff for BS17995.complete
Subject Subject Range Query Range Percent Splice Strand
C15-RA 1..1020 17..1036 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:42 Download gff for BS17995.complete
Subject Subject Range Query Range Percent Splice Strand
C15-RA 4..1021 17..1034 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:29 Download gff for BS17995.complete
Subject Subject Range Query Range Percent Splice Strand
C15-RA 273..1290 17..1034 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:20 Download gff for BS17995.complete
Subject Subject Range Query Range Percent Splice Strand
C15-RA 2..1023 15..1036 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:30 Download gff for BS17995.complete
Subject Subject Range Query Range Percent Splice Strand
C15-RA 273..1290 17..1034 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:30 Download gff for BS17995.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21500258..21500430 17..189 100 -> Plus
3R 21502254..21502669 190..605 100 -> Plus
3R 21507131..21507359 606..834 100 -> Plus
3R 21512049..21512248 835..1034 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:29 Download gff for BS17995.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17337771..17337970 835..1034 100   Plus
arm_3R 17325980..17326152 17..189 100 -> Plus
arm_3R 17327976..17328391 190..605 100 -> Plus
arm_3R 17332853..17333081 606..834 100 -> Plus

BS17995.pep Sequence

Translation from 16 to 1035

> BS17995.pep
MSSHEEDDHEHENEHGEEVEEQEIHVDVDSDSRMSCGSGSDVDMDGGSCY
DESETPLSESLQSEQTRSSSSENLPFSISRLLSKPFETSHHHHNNNNHLL
SSSPGSSSNNNNSGEKGEEKELLQQEDHDLAYKLATSIANSTYGSAAALY
SYPHLYPSAAGGHVLRVPPQRTPLTWALPPLHHAALAHQAVKDRLAAAFP
IARRIGHPYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAAL
ARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLMLSLQAEAIS
KGFAPPSAPLGSQGGVNGAPLAALHGLQPWAEASHAAGC*

BS17995.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
C15-PA 339 CG7937-PA 1..339 1..339 1779 100 Plus
Hmx-PE 592 CG43748-PE 313..567 50..309 242 28.6 Plus
Hmx-PC 592 CG43748-PC 313..567 50..309 242 28.6 Plus
Hmx-PD 718 CG43748-PD 313..567 50..309 242 28.6 Plus
CG18599-PA 475 CG18599-PA 90..377 5..278 209 24.2 Plus