Clone Sequence Records
BS18001.complete Sequence
1349 bp assembled on 2009-12-07
GenBank Submission: KX801260
> BS18001.complete
GAAGTTATCAGTCGACATGCCCGAACAAGTCACAGATCAGGAGAACCAGG
CTCCACAGCAGCAGACTACTGCTGTGCATGCCTACAATCCCGAAGTCCTG
CAGGATATGTTGCCCGTGTATTACAGGCGCCTCTTTCCCCACCTGCCCTT
CTACCGTTGGCTATCGTATGGATCATCCGAGGATGCTATCTTTTCCAATC
GTGAAATTTCCTTTACACTGCAGGACGATATCTACATACGTTACCTCTGC
TTTGATACCCAAGCTGAATTGGAAAAGGAGATCTGCTCGAGGAATCCTAT
TAAGATTGACATAGGACCAGTAATGCATTCCAAACCCAAAAACCATCGTT
CAATTCCTGGCGGCTTAACGCCCGTACAACGTGAACTCGTTTTTGATATA
GATATGACGGATTACGACGAGGTGCGTACCTGTTGCTCTGGAGCAGGGGT
ATGCCTGAAATGCTGGAAGTTTATGGTGCTGGCTGCCAGGGTTTTGGATG
TCGCTTTGCGCGAGGATTTCGGTTTCGAGCACATAATCTGGATTTTCTCA
GGTAGACGAGGTATCCATTGCTGGGTTTGCGACTACCAAGCCCGTCACTT
GGACGGACGTGGTCGCTATGCTGTGGCGGAATACCTTAACATTATTACCT
ATGCCAGTTTCGCGGGCGGCAATTCACCCAGATGTTCAATGGGAGACCGA
CCGCATCATAGCCTAAAGAGAGCCTTAAAGATAGTGGAGCCCATGTTCGA
GGAGATTGTACTAGAGGATCAGAATCTTTTTGGAACTCCCAAGGGAGTTA
CCAAACTTCTTAACATGGTCCACGATGACGCTGCGCGTGGCGAACTAGAA
TCTTATATGCAAAAGAATTTGGAGGATGGAGCACACTCGCGACTCGTTTG
GGAGAGCTTCATTAAGTACGCCAACTCTATGAGAACATCCACGACAAGTG
CCTGGAGTCGCAAGCTGAAGAACATTGTAGCCGAAATCCAGCTTGGACTG
CTCTATCCTCGTTTGGACATCAATGTCACTAGGGGATTCAATCATTTGCT
AAAGGCACCGTTTTGCATTCATCCAGCCACTGGAAAAGTGTGCGTTCCGT
TTAGTGTGAGTGCTGTGGCCAAGTTTGATCCCACCACAGTGCCGACGATC
ACCCAGTTGCTTCACGAGATCAACGCTTTCGATGATAAGAGCAAGAGCTA
CATGGAGGCGCCGGAGGATAAGAGCCGCATCAAGGATCACAAGAAGACTA
GCATGTTCAAGGGTGTCGTGGTTTTCGAGGAGTTCCTGCGAAAACTGGAG
CGCAGCCAGAAATCTGCCAGCTTGCAGTTTTGAAAGCTTTCTAGACCAT
BS18001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-alpha50-RA | 1317 | CG7108-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-alpha50-RA | 1569 | CG7108-RA | 196..1512 | 17..1333 | 6585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8343187..8344347 | 173..1333 | 5790 | 99.9 | Plus |
| 3L | 28110227 | 3L | 8342975..8343134 | 17..176 | 800 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 2467..2514 | 531..577 | 111 | 72.9 | Plus |
BS18001.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:22 Download gff for
BS18001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-alpha50-RA | 1..1317 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:39 Download gff for
BS18001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-alpha50-RA | 190..1505 | 17..1332 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:54 Download gff for
BS18001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-alpha50-RA | 196..1511 | 17..1332 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:22 Download gff for
BS18001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-alpha50-RA | 190..1510 | 17..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:53 Download gff for
BS18001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-alpha50-RA | 196..1511 | 17..1332 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:53 Download gff for
BS18001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8342975..8343134 | 17..176 | 100 | -> | Plus |
| 3L | 8343191..8344346 | 177..1332 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:54 Download gff for
BS18001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8336075..8336234 | 17..176 | 100 | -> | Plus |
| arm_3L | 8336291..8337446 | 177..1332 | 100 | | Plus |
BS18001.3prime Sequence
746 bp (493 high quality bases) assembled on 2007-06-06
> BS18001.3prime
ATGGTCTAGAAAGCTTTCAAAACTGCAAGCTGGCAGATTTCTGGCTGCGC
TCCAGTTTTCGCAGGAACTCCTCGAAAACCACGACACCCTTGAACATGCT
AGTCTTCTTGTGATCCTTGATGCGGCTCTTATCCTCCGGCGCCTCCATGT
AGCTCTTGCTCTTATCATCGAAAGCGTTGATCTCGTGAAGCAACTGGGTG
ATCGTCGGCACTGTGGTGGGATCAAACTTGGCCACAGCACTCACACTAAA
CGGAACGCACACTTTTCCAGTGGCTGGATGAATGCAAAACGGTGCCTTTA
GCAAATGATTGAATCCCCTAGTGACATTGATGTCCAAACGAGGATAGAGC
AGTCCAAGCTGGATTTCGGCTACAATGTTCTTCAGCTTGCGACTCCAGGC
ACTTGTCGTGGATGTTCTCATAGAGTTGGCGTACTTAATGAAGCTCTCCC
AAACGAGTCGCGAGTGTGCTCCATCCTCCAAATTCTTTTGCATATAAGAT
TCTAGTTCGCCACGCGCAGCGTCATCGTGGACCATGTTAAGAAGTTTGGT
AACTCCCTTGGGAGTTCCAAAAAGATTCTGATCCTCTAGTACAATCTCCT
CGAACATGGGCTCCACTATCTTTAAGGCTCTCTTTAGGCTATGATGCGGT
CGGTCTCCCATTGAACATCTGGGTGAATTGCCGCCCGCGAAACTGGCATA
GGTAATAATGTAAAGGTATTCCGCCACAGCATAACGACCACGTCCG
BS18001.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7108-PA | 1317 | DNApol-alpha50-RA | 588..1317 | 746..17 | 3600 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-alpha50-RA | 1569 | CG7108-RA | 783..1512 | 746..17 | 3620 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8343618..8344347 | 746..17 | 3620 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:18:14 has no hits.
BS18001.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:37 Download gff for
BS18001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7108-PA | 588..1317 | 17..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:06 Download gff for
BS18001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-alpha50-RA | 783..1516 | 12..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:18 Download gff for
BS18001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-alpha50-RA | 783..1516 | 12..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:18 Download gff for
BS18001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8343618..8344351 | 12..746 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:06 Download gff for
BS18001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8336718..8337451 | 12..746 | 99 | | Minus |
BS18001.5prime Sequence
909 bp (785 high quality bases) assembled on 2007-06-06
> BS18001.5prime
GAAGTTATCAGTCGACATGCCCGAACAAGTCACAGATCAGGAGAACCAGG
CTCCACAGCAGCAGACTACTGCTGTGCATGCCTACAATCCCGAAGTCCTG
CAGGATATGTTGCCCGTGTATTACAGGCGCCTCTTTCCCCACCTGCCCTT
CTACCGTTGGCTATCGTATGGATCATCCGAGGATGCTATCTTTTCCAATC
GTGAAATTTCCTTTACACTGCAGGACGATATCTACATACGTTACCTCTGC
TTTGATACCCAAGCTGAATTGGAAAAGGAGATCTGCTCGAGGAATCCTAT
TAAGATTGACATAGGACCAGTAATGCATTCCAAACCCAAAAACCATCGTT
CAATTCCTGGCGGCTTAACGCCCGTACAACGTGAACTCGTTTTTGATATA
GATATGACGGATTACGACGAGGTGCGTACCTGTTGCTCTGGAGCAGGGGT
ATGCCTGAAATGCTGGAAGTTTATGGTGCTGGCTGCCAGGGTTTTGGATG
TCGCTTTGCGCGAGGATTTCGGTTTCGAGCACATAATCTGGATTTTCTCA
GGTAGACGAGGTATCCATTGCTGGGTTTGCGACTACCAAGCCCGTCACTT
GGACGGACGTGGTCGCTATGCTGTGGCGGAATACCTTAACATTATTACCT
ATGCCAGTTTCGCGGGCGGCAATTCACCCAGATGTTCAATGGGAGACCGA
CCGCATCATAGCCTAAAGAGAGCCTTAAAGATAGTGGAGCCCATGTTCGA
GGAGATTGTACTAGAGGATCAGAATCTTTTTGGAACTCCCCAGGGAGTTA
CCAAACTTCTTAACATGGTCCACGATGACGCTGCGCGTGGCGAACTAGAA
ATCTATATGCAAAAGAATTTGGAGGATGGAGCACACTCGCGACTCGTTTG
GGGAGAGCT
BS18001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7108-PA | 1317 | DNApol-alpha50-RA | 1..834 | 17..850 | 4145 | 99.8 | Plus |
| CG7108-PA | 1317 | DNApol-alpha50-RA | 838..886 | 854..902 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-alpha50-RA | 1569 | CG7108-RA | 196..1087 | 17..909 | 4380 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8343187..8343916 | 173..902 | 3575 | 99.3 | Plus |
| 3L | 28110227 | 3L | 8342975..8343134 | 17..176 | 800 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 22:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 2467..2514 | 531..577 | 111 | 72.9 | Plus |
BS18001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:41 Download gff for
BS18001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7108-PA | 1..892 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:45:16 Download gff for
BS18001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-alpha50-RA | 196..1087 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:42 Download gff for
BS18001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-alpha50-RA | 196..1087 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:42 Download gff for
BS18001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8342975..8343134 | 17..176 | 100 | -> | Plus |
| 3L | 8343191..8343922 | 177..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:45:16 Download gff for
BS18001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8336075..8336234 | 17..176 | 100 | -> | Plus |
| arm_3L | 8336291..8337022 | 177..909 | 99 | | Plus |
BS18001.pep Sequence
Translation from 16 to 1332
> BS18001.pep
MPEQVTDQENQAPQQQTTAVHAYNPEVLQDMLPVYYRRLFPHLPFYRWLS
YGSSEDAIFSNREISFTLQDDIYIRYLCFDTQAELEKEICSRNPIKIDIG
PVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSGAGVCLKCW
KFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGR
YAVAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRALKIVEPMFEEIVLE
DQNLFGTPKGVTKLLNMVHDDAARGELESYMQKNLEDGAHSRLVWESFIK
YANSMRTSTTSAWSRKLKNIVAEIQLGLLYPRLDINVTRGFNHLLKAPFC
IHPATGKVCVPFSVSAVAKFDPTTVPTITQLLHEINAFDDKSKSYMEAPE
DKSRIKDHKKTSMFKGVVVFEEFLRKLERSQKSASLQF*
BS18001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-alpha50-PA | 438 | CG7108-PA | 1..438 | 1..438 | 2327 | 100 | Plus |
