Clone BS18002 Report

Search the DGRC for BS18002

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptsky-RF
Protein status:BS18002.pep: full length peptide match
Sequenced Size:1754

Clone Sequence Records

BS18002.complete Sequence

1754 bp assembled on 2009-12-07

GenBank Submission: KX806272

> BS18002.complete
GAAGTTATCAGTCGACATGGTTGGCAAAGTCTTGGGCATCAAAGACTTGG
AGCAGTTCAGTAGCCGGCGCAGCAGCGTCTACGTCGATCCCGAGTGCGAC
AAGTTCTTCGAGCTGCCGCTCTTCATCGCGGCCAGCTCGAACGACATCAC
CACCAAATGCCAGTGCTTCCAGTTCAGTCCAGGCAAGGAACCGGCACTGC
GCTCCTACACGGAAATCCAGCAGCTGCTGCAGCAGGGCAAGAAGCGCGAC
GTGAAGAACATACTCAGGGAGAACTCGTGGCCCATTAACTCCCCGATCCG
AGCCCAGCTATGGCCGATGTTGTGTGGCCAGCACCAGACCAAACAGCAAA
TGCTAGATGGCTTCTACTGGGAGATGGTTCACCAGGTCTTTGGCACCACG
GAGCTGTCGGAGAAGCCGATCATGCTGCCCGCCTTTGTGGATGCCACCCA
CTGTTTGCCCTACCACTTGACCAGCACGGGACGAGCCGTGGCCGATCGCA
TCGTGAATGTCCTGGGCTACGACTGCCCCGATATTACCTACAGTCCAGTA
TTGTATCCCATTACATCGATACTTTTGCATTTCATGTCGGAGGAGGAGGC
GTACATATGTCTGGCCGGTCTGGTCGGTAGCAAGGAGAAGGTATTCATCA
ATCAAACCAAACTACAGCACGAAGTCACTTGGAAGACGGTGATGCAGATA
GCCAAAAAGCACACAAAAAGTGCTACTTCGTATTTCCAACGTATTTGCCC
GGGCCTGAAGCTAGAACGCATCTTCATGGACTGGTGCTGGTGGATTCTAG
CCGGTCTACCCTTCCAGCATCTGGTGCGGATCATGGACTGCTACTTCCAC
GAGGGCATCAAGGTCCTGTACCGCGTGGCCCTCGTCATACTCAACCTGTT
TCACAAGGAGTGCCAGTCGAACAACGAATGGAGTCCGGACAACATTAAAA
ACGACATTGGCAACGCTTTGATCAAGTTCTGCAAGAAGATACCAGTGTCG
CCGGCGAAGTTGCTCCATGCCGCGTTTAGTATTAGGGGACTGAGTACCCA
GTATATTTCTAGAATATTTATCAAGACTGAAATGCTACTAAAAAGCCGCT
CCGTGCTCACCAGCGGTTCGAAGCAATTAATCAAATCGCGTTCAAGTGAT
AATCTGCCCACTAGTCAGTCGCAGGTCAACATCCAAATGATGTCCCACAC
CCTGACCATCCGAGAGCTGTTCACGCTGTGGTCCTGGCTGCCCGTGCGGA
TAACAATGTACCAACCGGTGCTGCTCTACACCACGGAGGAGCACGGCTGC
TCACTAACCACGTTCTACGTTCGGGTGGAGCAGCATGAACCCACGCTGCT
CATGATCAAGACGTGCAATAATGAGGTATTTGGTGCCTACTGCTCTTCGC
GCTGGTTTGAAAGAAATGTAAAAGATGACAAGGGCCAGCGACAGGCCTAC
TTCGGTACGGGCGAAACCTTTTTGTTCTCCCTATATCCAGAAAGAGCCAA
GTACCCATGGGTGGGCATTGAGGGCGACAAGGACCTGGGACACAGCTCCG
AACTATTTATGGCGGCCGACTCCAAGATGATCACTATTGGTGGCGGCGAG
GGGCAGGCCATCTGGATGGACGAGAACATTCGTTTCGGAAAGACGGACAG
CTGCAAGACCTTTAACAATCCGCCGCTGTGTCCGTCGGGCGACTTCGAGA
TTCGGGTGCTGGAAGTCTACGGATTCGTGGGCATCTAAAAGCTTTCTAGA
CCAT

BS18002.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
sky-RI 1722 CG9339-PI 1..1722 17..1738 8610 100 Plus
sky-RF 1722 CG9339-PF 1..1722 17..1738 8610 100 Plus
sky-RG 1707 CG9339-PG 151..1707 182..1738 7785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
sky-RI 4658 CG9339-RI 523..2253 17..1747 8625 99.9 Plus
sky-RF 3041 CG9339-RF 566..2296 17..1747 8625 99.9 Plus
CG43739-RA 4863 CG43739-RA 893..2458 182..1747 7800 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20877149..20877477 1044..716 1645 100 Minus
2L 23513712 2L 20873957..20874179 1596..1374 1115 100 Minus
2L 23513712 2L 20881987..20882194 590..383 1040 100 Minus
2L 23513712 2L 20882260..20882467 387..180 1040 100 Minus
2L 23513712 2L 20876912..20877085 1216..1043 870 100 Minus
2L 23513712 2L 20885281..20885454 190..17 840 98.9 Minus
2L 23513712 2L 20874271..20874434 1378..1215 820 100 Minus
2L 23513712 2L 20873740..20873891 1747..1596 730 98.7 Minus
2L 23513712 2L 20877553..20877678 715..590 630 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:14:21 has no hits.

BS18002.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:49 Download gff for BS18002.complete
Subject Subject Range Query Range Percent Splice Strand
CG9339-RF 1..1722 17..1738 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:59 Download gff for BS18002.complete
Subject Subject Range Query Range Percent Splice Strand
CG9339-RF 564..2283 17..1736 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:34 Download gff for BS18002.complete
Subject Subject Range Query Range Percent Splice Strand
sky-RF 566..2285 17..1736 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:53 Download gff for BS18002.complete
Subject Subject Range Query Range Percent Splice Strand
CG9339-RF 564..2283 17..1736 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:06:46 Download gff for BS18002.complete
Subject Subject Range Query Range Percent Splice Strand
sky-RF 566..2285 17..1736 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:06:46 Download gff for BS18002.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20877553..20877677 591..715 100 <- Minus
2L 20881987..20882191 386..590 100 <- Minus
2L 20876912..20877083 1045..1216 100 <- Minus
2L 20882262..20882464 183..385 100 <- Minus
2L 20885289..20885454 17..182 100   Minus
2L 20877149..20877477 716..1044 100 <- Minus
2L 20873751..20873890 1597..1736 100 <- Minus
2L 20873957..20874177 1376..1596 100 <- Minus
2L 20874274..20874432 1217..1375 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:34 Download gff for BS18002.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20873751..20873890 1597..1736 100 <- Minus
arm_2L 20873957..20874177 1376..1596 100 <- Minus
arm_2L 20874274..20874432 1217..1375 100 <- Minus
arm_2L 20876912..20877083 1045..1216 100 <- Minus
arm_2L 20877149..20877477 716..1044 100 <- Minus
arm_2L 20877553..20877677 591..715 100 <- Minus
arm_2L 20881987..20882191 386..590 100 <- Minus
arm_2L 20882262..20882464 183..385 100 <- Minus
arm_2L 20885289..20885454 17..182 100   Minus

BS18002.3prime Sequence

901 bp (802 high quality bases) assembled on 2007-06-06

> BS18002.3prime
ATGGTCTAGAAAGCTTTTAGATGCCCACGAATCCGTAGACTTCCAGCACC
CGAATCTCGAAGTCGCCCGACGGACACAGCGGCGGATTGTTAAAGGTCTT
GCAGCTGTCCGTCTTTCCGAAACGAATGTTCTCGTCCATCCAGATGGCCT
GCCCCTCGCCGCCACCAATAGTGATCATCTTGGAGTCGGCCGCCATAAAT
AGTTCGGAGCTGTGTCCCAGGTCCTTGTCGCCCTCAATGCCCACCCATGG
GTACTTGGCTCTTTCTGGATATAGGGAGAACAAAAAGGTTTCGCCCGTAC
CGAAGTAGGCCTGTCGCTGGCCCTTGTCATCTTTTACATTTCTTTCAAAC
CAGCGCGAAGAGCAGTAGGCACCAAATACCTCATTATTGCACGTCTTGAT
CATGAGCAGCGTGGGTTCATGCTGCTCCACCCGAACGTAGAACGTGGTTA
GTGAGCAGCCGTGCTCCTCCGTGGTGTAGAGCAGCACCGGTTGGTACATT
GTTATCCGCACGGGCAGCCAGGACCACAGCGTGAACAGCTCTCGGATGGT
CAGGGTGTGGGACATCATTTGGATGTTGACCTGCGACTGACTAGTGGGCA
GATTATCACTTGAACGCGATTTGATTAATTGCTTCGAACCGCTGGTGAGC
ACGGAGCGGCTTTTTAGTAGCATTTCAGTCTTGATAAATATTCTAGAAAT
ATACTGGGTACTCAGTCCCCTAATACTAAACGCGGCATGGAGCAACTTCG
CCGGCGACACTGGTATCTTCTTGCAGAACTTGATCAAAGCGTTGCCAATG
TCGTTTTTAATGTTGTCCGGACTCCATTCGTTGTTCGACTGGCACTCCTT
GTGAAACAGGTTGAGTATGACGAGGGCCACGCGGTACAAGACCCTGATGC
C

BS18002.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9339-PE 1707 CG9339-RE 823..1707 901..17 4375 99.7 Minus
CG9339-PF 1722 CG9339-RF 838..1722 901..17 4375 99.7 Minus
CG9339-PD 1707 CG9339-RD 823..1707 901..17 4375 99.7 Minus
CG9339-PG 1707 CG9339-RG 823..1707 901..17 4375 99.7 Minus
CG9339-PB 1764 CG9339-RB 1243..1764 538..17 2610 100 Minus
CG9339-PC 1779 CG9339-RC 1258..1779 538..17 2610 100 Minus
CG9339-PH 1764 CG9339-RH 1243..1764 538..17 2610 100 Minus
CG9339-PA 1764 CG9339-RA 1243..1764 538..17 2610 100 Minus
CG9339-PB 1764 CG9339-RB 823..1186 901..538 1770 99.4 Minus
CG9339-PC 1779 CG9339-RC 838..1201 901..538 1770 99.4 Minus
CG9339-PH 1764 CG9339-RH 823..1186 901..538 1770 99.4 Minus
CG9339-PA 1764 CG9339-RA 823..1186 901..538 1770 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG43739-RA 4863 CG43739-RA 1565..2458 901..8 4410 99.6 Minus
sky-RI 4658 CG9339-RI 1360..2253 901..8 4410 99.6 Minus
sky-RG 4863 CG9339-RG 1565..2458 901..8 4410 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20873957..20874179 159..381 1115 100 Plus
2L 23513712 2L 20877149..20877339 711..901 925 99 Plus
2L 23513712 2L 20876912..20877085 539..712 870 100 Plus
2L 23513712 2L 20874271..20874434 377..540 820 100 Plus
2L 23513712 2L 20873740..20873891 8..159 730 98.7 Plus
Blast to na_te.dros performed on 2015-02-12 05:10:28 has no hits.

BS18002.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:46 Download gff for BS18002.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9339-PG 823..1707 17..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:16:18 Download gff for BS18002.3prime
Subject Subject Range Query Range Percent Splice Strand
sky-RD 1725..2618 8..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:22 Download gff for BS18002.3prime
Subject Subject Range Query Range Percent Splice Strand
sky-RG 1565..2458 8..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:22 Download gff for BS18002.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20873957..20874177 159..379 100 <- Plus
2L 20874274..20874432 380..538 100 <- Plus
2L 20876912..20877083 539..710 100 <- Plus
2L 20877149..20877339 711..901 98   Plus
2L 20873740..20873890 8..158 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:16:18 Download gff for BS18002.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20877149..20877339 711..901 98   Plus
arm_2L 20873740..20873890 8..158 98 <- Plus
arm_2L 20873957..20874177 159..379 100 <- Plus
arm_2L 20874274..20874432 380..538 100 <- Plus
arm_2L 20876912..20877083 539..710 100 <- Plus

BS18002.5prime Sequence

907 bp (842 high quality bases) assembled on 2007-06-06

> BS18002.5prime
GAAGTTATCAGTCGACATGGTTGGCAAAGTCTTGGGCATCAAAGACTTGG
AGCAGTTCAGTAGCCGGCGCAGCAGCGTCTACGTCGATCCCGAGTGCGAC
AAGTTCTTCGAGCTGCCGCTCTTCATCGCGGCCAGCTCGAACGACATCAC
CACCAAATGCCAGTGCTTCCAGTTCAGTCCAGGCAAGGAACCGGCACTGC
GCTCCTACACGGAAATCCAGCAGCTGCTGCAGCAGGGCAAGAAGCGCGAC
GTGAAGAACATACTCAGGGAGAACTCGTGGCCCATTAACTCCCCGATCCG
AGCCCAGCTATGGCCGATGTTGTGTGGCCAGCACCAGACCAAACAGCAAA
TGCTAGATGGCTTCTACTGGGAGATGGTTCACCAGGTCTTTGGCACCACG
GAGCTGTCGGAGAAGCCGATCATGCTGCCCGCCTTTGTGGATGCCACCCA
CTGTTTGCCCTACCACTTGACCAGCACGGGACGAGCCGTGGCCGATCGCA
TCGTGAATGTCCTGGGCTACGACTGCCCCGATATTACCTACAGTCCAGTA
TTGTATCCCATTACATCGATACTTTTGCATTTCATGTCGGAGGAGGAGGC
GTACATATGTCTGGCCGGTCTGGTCGGTAGCAAGGAGAAGGTATTCATCA
ATCAAACCAAACTACAGCACGAAGTCACTTGGAAGACGGTGATGCAGATA
GCCAAAAAGCACACAAAAAGTGCTACTTCGTATTTCCAACGTATTTGCCC
GGGCCTGAAGCTAGAACGCATCTTCATGGACTGGTGCTGGTGGATTCTAG
CCGGTCTACCCTTCCAGCATCTGGTGCGGATCATGGACTGCTACTTCCAC
GAGGGCATCAAGGTCCTGTACCGCGTGGCCCTCGTCATACTCAACCTGTT
TCACAAG

BS18002.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9339-PC 1779 CG9339-RC 1..891 17..907 4455 100 Plus
CG9339-PF 1722 CG9339-RF 1..891 17..907 4455 100 Plus
CG9339-PB 1764 CG9339-RB 151..876 182..907 3630 100 Plus
CG9339-PE 1707 CG9339-RE 151..876 182..907 3630 100 Plus
CG9339-PD 1707 CG9339-RD 151..876 182..907 3630 100 Plus
CG9339-PH 1764 CG9339-RH 151..876 182..907 3630 100 Plus
CG9339-PG 1707 CG9339-RG 151..876 182..907 3630 100 Plus
CG9339-PA 1764 CG9339-RA 151..876 182..907 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
sky-RI 4658 CG9339-RI 523..1413 17..907 4455 100 Plus
sky-RF 3041 CG9339-RF 566..1456 17..907 4455 100 Plus
sky-RC 4758 CG9339-RC 566..1456 17..907 4455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20882260..20882467 387..180 1040 100 Minus
2L 23513712 2L 20881987..20882194 590..383 1040 100 Minus
2L 23513712 2L 20877286..20877477 907..716 960 100 Minus
2L 23513712 2L 20885281..20885454 190..17 840 98.9 Minus
2L 23513712 2L 20877553..20877678 715..590 630 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:28:42 has no hits.

BS18002.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:57:51 Download gff for BS18002.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9339-PF 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:25 Download gff for BS18002.5prime
Subject Subject Range Query Range Percent Splice Strand
sky-RC 566..1456 17..907 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:26 Download gff for BS18002.5prime
Subject Subject Range Query Range Percent Splice Strand
sky-RC 566..1456 17..907 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:26 Download gff for BS18002.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20877553..20877677 591..715 100 <- Minus
2L 20881987..20882191 386..590 100 <- Minus
2L 20882262..20882464 183..385 100 <- Minus
2L 20885289..20885454 17..182 100   Minus
2L 20877286..20877477 716..907 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:25 Download gff for BS18002.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20877286..20877477 716..907 100 <- Minus
arm_2L 20877553..20877677 591..715 100 <- Minus
arm_2L 20881987..20882191 386..590 100 <- Minus
arm_2L 20882262..20882464 183..385 100 <- Minus
arm_2L 20885289..20885454 17..182 100   Minus

BS18002.pep Sequence

Translation from 16 to 1737

> BS18002.pep
MVGKVLGIKDLEQFSSRRSSVYVDPECDKFFELPLFIAASSNDITTKCQC
FQFSPGKEPALRSYTEIQQLLQQGKKRDVKNILRENSWPINSPIRAQLWP
MLCGQHQTKQQMLDGFYWEMVHQVFGTTELSEKPIMLPAFVDATHCLPYH
LTSTGRAVADRIVNVLGYDCPDITYSPVLYPITSILLHFMSEEEAYICLA
GLVGSKEKVFINQTKLQHEVTWKTVMQIAKKHTKSATSYFQRICPGLKLE
RIFMDWCWWILAGLPFQHLVRIMDCYFHEGIKVLYRVALVILNLFHKECQ
SNNEWSPDNIKNDIGNALIKFCKKIPVSPAKLLHAAFSIRGLSTQYISRI
FIKTEMLLKSRSVLTSGSKQLIKSRSSDNLPTSQSQVNIQMMSHTLTIRE
LFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYVRVEQHEPTLLMIKTC
NNEVFGAYCSSRWFERNVKDDKGQRQAYFGTGETFLFSLYPERAKYPWVG
IEGDKDLGHSSELFMAADSKMITIGGGEGQAIWMDENIRFGKTDSCKTFN
NPPLCPSGDFEIRVLEVYGFVGI*

BS18002.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
sky-PI 573 CG9339-PI 1..573 1..573 3060 100 Plus
sky-PF 573 CG9339-PF 1..573 1..573 3060 100 Plus
sky-PC 592 CG9339-PC 1..592 1..573 3030 96.8 Plus
sky-PG 568 CG9339-PG 51..568 56..573 2772 100 Plus
sky-PD 568 CG9339-PD 51..568 56..573 2772 100 Plus