Clone Sequence Records
BS18004.complete Sequence
2030 bp assembled on 2009-12-07
GenBank Submission: KX805857
> BS18004.complete
GAAGTTATCAGTCGACATGTTCTGCAGCAATACAAACTCTAAAACGGCAG
CGCAGCCAAAGAGATCTAGGAGTGATGATGAGGCGGCGAAGCTGAGAAGA
GCCAACCGGCAGGAGGAGATGCTTCGCCAAATGCTCCAGCCGGATACTAC
AGAAGAGCGCAATCGCAAAGATGCCATTTTTGCCATGAATTTTTATGAAA
AGGTAGAGGAGGCCTTGCTGAGTGCCAATCGCCTAGATGATTGCAAAAAA
TTCAACAGTATTTTGCAAAACTTCGACCCCAGGCAGGAGAAAGTTTCATC
TTTGTATTTGAAAGTGGAAGAAATTTTGCTACCCACTCATCCCGAACTGG
CTGAAGTATTCCTCAACTTTTTGCTACCTGCCGAGGCCGCTGAGATGGGA
AAATTCTTTGAGCACTTTATGATATGCAATGCTACCAACTTTATCAACAA
ACTTAACATTTACTTCAGTAAGCAGCCAGCTCAAATCAGGAAGATTTATG
CCTGTCTAAACGAGTTGGCCGAAATGCCTAATGTCAGCATGAAAAAAGTT
GAAAATAAGATAATGCCCTTGCTCAAGGGCAATCAATTTCTGATCGATTG
GTTTGTGCAACAATTCCCACAGGGAAAACCACCAAAAAGAATCCTTTCTC
CTGTAGAGACCATAAATTTGCATGACGTTCAAAACAATACAACGGGAGAA
TATACGGAAACTATTCAAGAGTTTACAGATGTACCTACGCCAAGTAAACC
AGGTTGTCACTTAAAGTATATCAATGGTCGCATATTTTATGGAGCCAAGA
TCCTATTGCCTGCCAAACTGTCTTTTATGGCTGCCAGTATTTACAATGAA
CAATCTCATGACGTGCCACCCGTCTCCAGTGACTCGATAAACTGCGCCCA
TGGTATTCGTGCCCAGGGAGAAAAACTTCTTAGTATGGCTTCCAATACAG
ATAGCGACGATGGCGCGGATCGGAGTGAGGAAGATGATGCCAGCCGCGCC
TTGATTATTGATACCACGAGTGATGAGCAGAACAGCTGCTCATCTATTGA
GATGTGCGATGAGACAGGCTTAAGAGCACATGCAATCAGATTGAATCCCG
GCTTGTATACCAACTCAAGCTTTAACAATGCAGCGACCAGTACGCCCAAT
CTGGGCAACTCTCACCAATCCCATCATCCGCACGCCAAAAAAACTGCCAT
AAACTTTGGTGAAATATCCCCACGCAAGCAATCGGCATTTAACAACTCGG
GATTGAGTCCCTTATCGGCGGCCCCCAACAGTTCCCCTCAAGTCGACAAA
CGAAAGTCACCTACTAAGAAGATCCGATCTCCTCTTAATCAAACTCAGAG
CAGACAACGTGCCAATAATCAGCCAATGGTTGTTATCCATGAGTCTCAGC
CTTCATCTTCGCCAGCCATTGAGTGTGCAAAGCGCTTGCGCACGCTGATC
GATCAGGAGAGCGTGCGGGATGCAGCAGATACAAAGGCGGGCATTCGAAT
TATTGCGCAAGCCAAGCAGCAACCTCCAAACCAATGCAGCTCTGAAGCTA
TTACGAAAGTCGAGGTAGTCAGCCTGGATGAAAGTGCCGAGAATATGCCT
TTCTGTACAAATCTCAAAATGGACACAGATCAATCGGAGGAGGAGCTGGA
GCCACTGCAATTAAGTGCTGGCAACACACCACAGCACGTGATCACAACAC
AATTCGATAGCGATGAGGACTGCAAGCTGGATGTTGTGGCCACGCTGGCG
AACTGCACCACCACCGAAGATAGATCGGAATCGGCAGCGGCATTACCTGC
CACCACATCGCACTCTGAGTCTGGTAGTTCCCACTCGGCACCTTGGACTC
GTGAAGAGGACAAAGTAATCCTGATCGAAATGAAAATAGGGGCACGGGAT
CGAGAGCAGCTCATTCGGCGTATGCGCGCCAAGCTAAAGAATCGCAGTAT
AGAAGAACTACGTAGTAGGCATCAGTTTCTTATGGACTTTCTGTCCAAAT
TGCAGGGAAAGTGAAAGCTTTCTAGACCAT
BS18004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mute-RD | 1998 | CG34415-PD | 1..1998 | 17..2014 | 9990 | 100 | Plus |
| mute-RC | 5220 | CG34415-PC | 3223..5220 | 17..2014 | 9990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mute-RD | 3340 | CG34415-RD | 923..2920 | 17..2014 | 9990 | 100 | Plus |
| mute-RC | 5751 | CG34415-RC | 3334..5331 | 17..2014 | 9990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16948716..16950092 | 2014..638 | 6885 | 100 | Minus |
| 2R | 25286936 | 2R | 16950152..16950481 | 639..310 | 1650 | 100 | Minus |
| 2R | 25286936 | 2R | 16950742..16950901 | 176..17 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 16950541..16950674 | 310..177 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:24:57 has no hits.
BS18004.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:44 Download gff for
BS18004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34415-RD | 918..2909 | 22..2013 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:42 Download gff for
BS18004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 3339..5330 | 22..2013 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:44 Download gff for
BS18004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34415-RD | 918..2909 | 22..2013 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:53 Download gff for
BS18004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 3339..5330 | 22..2013 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:53 Download gff for
BS18004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16950541..16950674 | 177..310 | 100 | <- | Minus |
| 2R | 16950742..16950896 | 22..176 | 100 | | Minus |
| 2R | 16950152..16950480 | 311..639 | 100 | <- | Minus |
| 2R | 16948717..16950090 | 640..2013 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:42 Download gff for
BS18004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12836222..12837595 | 640..2013 | 100 | <- | Minus |
| arm_2R | 12837657..12837985 | 311..639 | 100 | <- | Minus |
| arm_2R | 12838046..12838179 | 177..310 | 100 | <- | Minus |
| arm_2R | 12838247..12838401 | 22..176 | 100 | | Minus |
BS18004.3prime Sequence
855 bp (819 high quality bases) assembled on 2007-06-06
> BS18004.3prime
ATGGTCTAGAAAGCTTTCACTTTCCCTGCAATTTGGACAGAAAGTCCATA
AGAAACTGATGCCTACTACGTAGTTCTTCTATACTGCGATTCTTTAGCTT
GGCGCGCATACGCCGAATGAGCTGCTCTCGATCCCGTGCCCCTATTTTCA
TTTCGATCAGGATTACTTTGTCCTCTTCACGAGTCCAAGGTGCCGAGTGG
GAACTACCAGACTCAGAGTGCGATGTGGTGGCAGGTAATGCCGCTGCCGA
TTCCGATCTATCTTCGGTGGTGGTGCAGTTCGCCAGCGTGGCCACAACAT
CCAGCTTGCAGTCCTCATCGCTATCGAATTGTGTTGTGATCACGTGCTGT
GGTGTGTTGCCAGCACTTAATTGCAGTGGCTCCAGCTCCTCCTCCGATTG
ATCTGTGTCCATTTTGAGATTTGTACAGAAAGGCATATTCTCGGCACTTT
CATCCAGGCTGACTACCTCGACTTTCGTAATAGCTTCAGAGCTGCATTGG
TTTGGAGGTTGCTGCTTGGCTTGCGCAATAATTCGAATGCCCGCCTTTGT
ATCTGCTGCATCCCGCACGCTCTCCTGATCGATCAGCGTGCGCAAGCGCT
TTGCACACTCAATGGCTGGCGAAGATGAAGGCTGAGACTCATGGATAACA
ACCATTGGCTGATTATTGGCACGTTGTCTGCTCTGAGTTTGATTAAGAGG
AGATCGGATCTTCTTAGTAGGTGACTTTCGTTTGTCGACTTGAGGGGAAC
TGTTGGGGGCCGCCGATAAGGGACTCAATCCCGAGTTGTTAAATGCCGAT
TGCTTGCGTGGGGATATTTCACCAAAGTTTATGGCAGTTTTTTTGGCGTG
CGGAT
BS18004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33456-PA | 1998 | CG33456-RA | 1160..1998 | 855..17 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mute-RD | 3340 | CG34415-RD | 2082..2920 | 855..17 | 4195 | 100 | Minus |
| mute-RC | 5751 | CG34415-RC | 4493..5331 | 855..17 | 4195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16948716..16949554 | 17..855 | 4195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:38:01 has no hits.
BS18004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:06 Download gff for
BS18004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33456-PA | 1160..1998 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:40 Download gff for
BS18004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 4493..5338 | 8..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:19 Download gff for
BS18004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 4493..5338 | 8..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:19 Download gff for
BS18004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16948709..16949554 | 8..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:40 Download gff for
BS18004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12836214..12837059 | 8..855 | 99 | | Plus |
BS18004.5prime Sequence
885 bp (743 high quality bases) assembled on 2007-06-06
> BS18004.5prime
GAAGTTATCAGTCGACATGTTCTGCAGCAATACAAACTCTAAAACGGCAG
CGCAGCCAAAGAGATCTAGGAGTGATGATGAGGCGGCGAAGCTGAGAAGA
GCCAACCGGCAGGAGGAGATGCTTCGCCAAATGCTCCAGCCGGATACTAC
AGAAGAGCGCAATCGCAAAGATGCCATTTTTGCCATGAATTTTTATGAAA
AGGTAGAGGAGGCCTTGCTGAGTGCCAATCGCCTAGATGATTGCAAAAAA
TTCAACAGTATTTTGCAAAACTTCGACCCCAGGCAGGAGAAAGTTTCATC
TTTGTATTTGAAAGTGGAAGAAATTTTGCTACCCACTCATCCCGAACTGG
CTGAAGTATTCCTCAACTTTTTGCTACCTGCCGAGGCCGCTGAGATGGGA
AAATTCTTTGAGCACTTTATGATATGCAATGCTACCAACTTTATCAACAA
ACTTAACATTTACTTCAGTAAGCAGCCAGCTCAAATCAGGAAGATTTATG
CCTGTCTAAACGAGTTGGCCGAAATGCCTAATGTCAGCATGAAAAAAGTT
GAAAATAAGATAATGCCCTTGCTCAAGGGCAATCAATTTCTGATCGATTG
GTTTGTGCAACAATTCCCACAGGGAAAACCACCAAAAAGAATCCTTTCTC
CTGTAGAGACCATAAATTTGCATGACGTTCAAAACAATACAACGGGAGAA
TATACGGAAACTATTCAAGAGTTTACAGATGTACCTACGCCAAGTAAACC
AGGTTGTCACTTAAAGTATATCAATGGTCGCATATTTTATGGAGCCAAGA
TCCTATTGCCCTGCAAACTGTCTTTTATGGCTGCCAGTATTTACAATGAA
ACATCTCATGACGTGCCACCCGTCTCCAGTGACTC
BS18004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33456-PA | 1998 | CG33456-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
| CG33456-PA | 1998 | CG33456-RA | 798..869 | 814..885 | 310 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mute-RD | 3340 | CG34415-RD | 923..1791 | 17..885 | 4270 | 99.5 | Plus |
| mute-RC | 5751 | CG34415-RC | 3334..4202 | 17..885 | 4270 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:53:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16950152..16950481 | 639..310 | 1650 | 100 | Minus |
| 2R | 25286936 | 2R | 16949845..16950092 | 885..638 | 1165 | 98 | Minus |
| 2R | 25286936 | 2R | 16950742..16950901 | 176..17 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 16950541..16950674 | 310..177 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:53:16 has no hits.
BS18004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:11 Download gff for
BS18004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33456-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:51 Download gff for
BS18004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 3334..4202 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:46:19 Download gff for
BS18004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 3334..4202 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:46:19 Download gff for
BS18004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16950742..16950901 | 17..176 | 100 | | Minus |
| 2R | 16949845..16950090 | 640..885 | 98 | <- | Minus |
| 2R | 16950152..16950480 | 311..639 | 100 | <- | Minus |
| 2R | 16950541..16950674 | 177..310 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:51 Download gff for
BS18004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12837350..12837595 | 640..885 | 98 | <- | Minus |
| arm_2R | 12837657..12837985 | 311..639 | 100 | <- | Minus |
| arm_2R | 12838046..12838179 | 177..310 | 100 | <- | Minus |
| arm_2R | 12838247..12838406 | 17..176 | 100 | | Minus |
BS18004.pep Sequence
Translation from 16 to 2013
> BS18004.pep
MFCSNTNSKTAAQPKRSRSDDEAAKLRRANRQEEMLRQMLQPDTTEERNR
KDAIFAMNFYEKVEEALLSANRLDDCKKFNSILQNFDPRQEKVSSLYLKV
EEILLPTHPELAEVFLNFLLPAEAAEMGKFFEHFMICNATNFINKLNIYF
SKQPAQIRKIYACLNELAEMPNVSMKKVENKIMPLLKGNQFLIDWFVQQF
PQGKPPKRILSPVETINLHDVQNNTTGEYTETIQEFTDVPTPSKPGCHLK
YINGRIFYGAKILLPAKLSFMAASIYNEQSHDVPPVSSDSINCAHGIRAQ
GEKLLSMASNTDSDDGADRSEEDDASRALIIDTTSDEQNSCSSIEMCDET
GLRAHAIRLNPGLYTNSSFNNAATSTPNLGNSHQSHHPHAKKTAINFGEI
SPRKQSAFNNSGLSPLSAAPNSSPQVDKRKSPTKKIRSPLNQTQSRQRAN
NQPMVVIHESQPSSSPAIECAKRLRTLIDQESVRDAADTKAGIRIIAQAK
QQPPNQCSSEAITKVEVVSLDESAENMPFCTNLKMDTDQSEEELEPLQLS
AGNTPQHVITTQFDSDEDCKLDVVATLANCTTTEDRSESAAALPATTSHS
ESGSSHSAPWTREEDKVILIEMKIGARDREQLIRRMRAKLKNRSIEELRS
RHQFLMDFLSKLQGK*
BS18004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mute-PD | 665 | CG34415-PD | 1..665 | 1..665 | 3419 | 100 | Plus |
| mute-PC | 1739 | CG34415-PC | 1075..1739 | 1..665 | 3419 | 100 | Plus |
