Clone Sequence Records
BS18006.complete Sequence
1172 bp assembled on 2009-12-07
GenBank Submission: KX805220
> BS18006.complete
GAAGTTATCAGTCGACATGGCTGACGCCGCCCACCAGGAGTTCGCCCGCC
GGCTGGCCCTTTTCTCTATCAACGTGTACGGCAAGCTGTCGGGGCAGAAG
CCCGGCGAGAACATCGTCTTCTCGCCCTTTTCCATCCAGACTTGTGCGGC
GATGGCCAGGCTGGGTGCAGAAAACGAGACGGCTACCCAGCTGGACCAGG
GACTGGGCTTGGCCTCTAGTGACCCAGAGCAAATCGCACACAGTTTTCAC
CAGGTGCTGGCCGCCTACCAGGACAGTCAGATCTTGCGCATCGCCAACAA
GATTTTCGTCATGGATGGCTACCAGCTGCGCCAGGAGTTTGATCAGCTGT
TATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCGTGGACTTTTCCAAAAAT
GTACAAGCAGCGGCCACCATCAACAATTGGGTTGAGCAGCGCACCAACCA
TCTGATCAAGGACCTTGTGCCGGCTGATGTATTGAACTCCGAATCGCGAC
TCGTCCTTGTGAACGCCATTCACTTCAAGGGCACCTGGCAGCACCAGTTC
GCCAAACACTTAACCCGCCCAGACACCTTTCACCTGGATGGGGAGCGAAC
AGTTCAGGTTCCGATGATGAGTTTAAAGGAGCGGTTCCGCTACGCCGATC
TGCCGGCGCTAGATGCCATGGCTCTGGAACTGCCCTACAAGGACTCAGAC
CTCTCTATGCTGATCGTACTGCCCAACACCAAGACGGGTCTGCCCGCTCT
GGAGGAGAAGTTGCGCCTCACGACCCTCTCGCAGATCACGCAGTCGTTGT
ACGAAACAAAGGTAGCGCTCAAATTGCCCAGGTTCAAGGCAGAGTTCCAA
GTGGAATTGTCTGAGGTTTTCCAGAAGCTGGGCATGTCAAGGATGTTCTC
CGATCAGGCTGAATTTGGAAAAATGCTACAAAGTCCGGAGCCATTGAAAG
TGTCAGCCATCATACACAAGGCCTTCATTGAAGTCAACGAGGAGGGAACG
GAGGCTGCGGCCGCCACGGGAATGGTCATGTGCTACGCCTCCATGCTCAC
GTTCGAACCGCAGCCCGTCCAATTCCATGTCCAGCATCCATTTAACTATT
ACATTATCAATAAGGATTCTACTATTTTGTTTGCGGGAAGAATCAATAAG
TTTTGAAAGCTTTCTAGACCAT
BS18006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RF | 1236 | CG9453-PF | 96..1236 | 16..1156 | 5705 | 100 | Plus |
| Spn42Da-RE | 1236 | CG9453-PE | 96..1236 | 16..1156 | 5705 | 100 | Plus |
| Spn42Da-RL | 1140 | CG9453-PL | 1..1140 | 17..1156 | 5700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RL | 2155 | CG9453-RL | 640..1781 | 16..1157 | 5710 | 100 | Plus |
| Spn42Da-RK | 1789 | CG9453-RK | 274..1415 | 16..1157 | 5710 | 100 | Plus |
| Spn42Da-RH | 1763 | CG9453-RH | 274..1415 | 16..1157 | 5710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877427..6878288 | 877..16 | 4310 | 100 | Minus |
| 2R | 25286936 | 2R | 6877220..6877364 | 1020..876 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 6876596..6876734 | 1157..1019 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:47:33 has no hits.
BS18006.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:20 Download gff for
BS18006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RH | 275..1413 | 17..1155 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:53 Download gff for
BS18006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RH | 275..1413 | 17..1155 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:27 Download gff for
BS18006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RF | 151..1289 | 17..1155 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:51 Download gff for
BS18006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RH | 275..1413 | 17..1155 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:51 Download gff for
BS18006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6876598..6876733 | 1020..1155 | 100 | <- | Minus |
| 2R | 6877221..6877362 | 878..1019 | 100 | <- | Minus |
| 2R | 6877427..6878287 | 17..877 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:53 Download gff for
BS18006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2764103..2764238 | 1020..1155 | 100 | <- | Minus |
| arm_2R | 2764726..2764867 | 878..1019 | 100 | <- | Minus |
| arm_2R | 2764932..2765792 | 17..877 | 100 | | Minus |
BS18006.3prime Sequence
772 bp (685 high quality bases) assembled on 2007-06-06
> BS18006.3prime
ATGGTCTAGAAAGCTTTCAAAACTTATTGATTCTTCCCGCAAACAAAATA
GTAGAATCCTTATTGATAATGTAATAGTTAAATGGATGCTGGACATGGAA
TTGGACGGGCTGCGGTTCGAACGTGAGCATGGAGGCGTAGCACATGACCA
TTCCCGTGGCGGCCGCAGCCTCCGTTCCCTCCTCGTTGACTTCAATGAAG
GCCTTGTGTATGATGGCTGACACTTTCAATGGCTCCGGACTTTGTAGCAT
TTTTCCAAATTCAGCCTGATCGGAGAACATCCTTGACATGCCCAGCTTCT
GGAAAACCTCAGACAATTCCACTTGGAACTCTGCCTTGAACCTGGGCAAT
TTGAGCGCTACCTTTGTTTCGTACAACGACTGCGTGATCTGCGAGAGGGT
CGTGAGGCGCAACTTCTCCTCCAGAGCGGGCAGACCCGTCTTGGTGTTGG
GCAGTACGATCAGCATAGAGAGGTCTGAGTCCTTGTAGGGCAGTTCCAGA
GCCATGGCATCTAGCGCCGGCAGATCGGCGTAGCGGAACCGCTCCTTTAA
ACTCATCATCGGAACCTGAACTGTTCGCTCCCCATCCAGGTGAAAGGTGT
CTGGGCGGGTTAAGTGTTTGGCGAACTGGTGCTGCCAGGTGCCCTTGAAG
TGAATGGCGTTCACAAGGACGAGTCGCGATTCGGAGTTCATACATCAGCC
GGCACAAGGTCCTTGATCAGATGGTTGGTGCGCTGCTCAACCCAATTGTT
GATGGTGGCCGCTGCTTGTACA
BS18006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9453-PC | 1257 | Spn4-RC | 584..1257 | 690..17 | 3370 | 100 | Minus |
| CG9453-PE | 1236 | Spn4-RE | 563..1236 | 690..17 | 3370 | 100 | Minus |
| CG9453-PF | 1236 | Spn4-RF | 563..1236 | 690..17 | 3370 | 100 | Minus |
| CG9453-PH | 1140 | Spn4-RH | 467..1140 | 690..17 | 3370 | 100 | Minus |
| CG9453-PK | 1140 | Spn4-RK | 467..1140 | 690..17 | 3370 | 100 | Minus |
| CG9453-PB | 1275 | Spn4-RB | 563..1100 | 690..153 | 2690 | 100 | Minus |
| CG9453-PA | 1179 | Spn4-RA | 467..1004 | 690..153 | 2690 | 100 | Minus |
| CG9453-PD | 1236 | Spn4-RD | 563..1100 | 690..153 | 2690 | 100 | Minus |
| CG9453-PG | 1140 | Spn4-RG | 467..1004 | 690..153 | 2690 | 100 | Minus |
| CG9453-PI | 1221 | Spn4-RI | 563..1099 | 690..154 | 2685 | 100 | Minus |
| CG9453-PJ | 1125 | Spn4-RJ | 467..1003 | 690..154 | 2685 | 100 | Minus |
| CG9453-PC | 1257 | Spn4-RC | 501..583 | 772..690 | 415 | 100 | Minus |
| CG9453-PE | 1236 | Spn4-RE | 480..562 | 772..690 | 415 | 100 | Minus |
| CG9453-PF | 1236 | Spn4-RF | 480..562 | 772..690 | 415 | 100 | Minus |
| CG9453-PH | 1140 | Spn4-RH | 384..466 | 772..690 | 415 | 100 | Minus |
| CG9453-PK | 1140 | Spn4-RK | 384..466 | 772..690 | 415 | 100 | Minus |
| CG9453-PB | 1275 | Spn4-RB | 480..562 | 772..690 | 415 | 100 | Minus |
| CG9453-PA | 1179 | Spn4-RA | 384..466 | 772..690 | 415 | 100 | Minus |
| CG9453-PD | 1236 | Spn4-RD | 480..562 | 772..690 | 415 | 100 | Minus |
| CG9453-PG | 1140 | Spn4-RG | 384..466 | 772..690 | 415 | 100 | Minus |
| CG9453-PI | 1221 | Spn4-RI | 480..562 | 772..690 | 415 | 100 | Minus |
| CG9453-PJ | 1125 | Spn4-RJ | 384..466 | 772..690 | 415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RL | 2155 | CG9453-RL | 1024..1781 | 772..16 | 3765 | 99.9 | Minus |
| Spn42Da-RK | 1789 | CG9453-RK | 658..1415 | 772..16 | 3765 | 99.9 | Minus |
| Spn42Da-RH | 1763 | CG9453-RH | 658..1415 | 772..16 | 3765 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877427..6877904 | 296..772 | 2340 | 99.8 | Plus |
| 2R | 25286936 | 2R | 6877220..6877364 | 153..297 | 725 | 100 | Plus |
| 2R | 25286936 | 2R | 6876596..6876734 | 16..154 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:53:24 has no hits.
BS18006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:16 Download gff for
BS18006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9453-PK | 385..1140 | 17..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:53 Download gff for
BS18006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RH | 659..1418 | 11..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:46:49 Download gff for
BS18006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RH | 659..1418 | 11..771 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:46:49 Download gff for
BS18006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6876593..6876733 | 11..153 | 98 | <- | Plus |
| 2R | 6877221..6877362 | 154..295 | 100 | <- | Plus |
| 2R | 6877427..6877903 | 296..771 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:53 Download gff for
BS18006.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2764098..2764238 | 11..153 | 98 | <- | Plus |
| arm_2R | 2764726..2764867 | 154..295 | 100 | <- | Plus |
| arm_2R | 2764932..2765408 | 296..771 | 99 | | Plus |
BS18006.5prime Sequence
790 bp (603 high quality bases) assembled on 2007-06-06
> BS18006.5prime
GAGGTTATCAGTCGACATGGCTGACGCCGCCCACCAGGAGTTCGCCCGCC
GGCTGGCCCTTTTCTCTATCAACGTGTACGGCAAGCTGTCGGGGCAGAAG
CCCGGCGAGAACATCGTCTTCTCGCCCTTTTCCATCCAGACTTGTGCGGC
GATGGCCAGGCTGGGTGCAGAAAACGAGACGGCTACCCAGCTGGACCAGG
GACTGGGCTTGGCCTCTAGTGACCCAGAGCAAATCGCACACAGTTTTCAC
CAGGTGCTGGCCGCCTACCAGGACAGTCAGATCTTGCGCATCGCCAACAA
GATTTTCGTCATGGATGGCTACCAGCTGCGCCAGGAGTTTGATCAGCTGT
TATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCGTGGACTTTTCCAAAAAT
GTACAAGCAGCGGCCACCATCAACAATTGGGTTGAGCAGCGCACCAACCA
TCTGATCAAGGACCTTGTGCCGGCTGATGTATTGAACTCCGAATCGCGAC
TCGTCCTTGTGAACGCCATTCACTTCAAGGGCACCTGGCAGCACCAGTTC
GCCAAACACTTAACCCGCCCAGACACCTTTCACCTGGATGGGGAGCGAAC
AGTTCACGTTCCGATGATGAGTTTAAAGGAGCGGTTCCGCTACGCCGATC
TGCCGGCGCTAGATGCCATGGCTCTGGAACTGCCCTACAAGGACTCAGAC
CTCTCTATGCTGATCGTACTGCCCAACACCAAGACGGGTCTGCCCGCTCT
GGAGGAGAAGTTGCGCCTCACGACCCTCTCGCAGATCACG
BS18006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9453-PC | 1257 | Spn4-RC | 117..891 | 16..790 | 3850 | 99.8 | Plus |
| CG9453-PB | 1275 | Spn4-RB | 96..870 | 16..790 | 3850 | 99.8 | Plus |
| CG9453-PD | 1236 | Spn4-RD | 96..870 | 16..790 | 3850 | 99.8 | Plus |
| CG9453-PE | 1236 | Spn4-RE | 96..870 | 16..790 | 3850 | 99.8 | Plus |
| CG9453-PF | 1236 | Spn4-RF | 96..870 | 16..790 | 3850 | 99.8 | Plus |
| CG9453-PI | 1221 | Spn4-RI | 96..870 | 16..790 | 3850 | 99.8 | Plus |
| CG9453-PA | 1179 | Spn4-RA | 1..774 | 17..790 | 3845 | 99.8 | Plus |
| CG9453-PG | 1140 | Spn4-RG | 1..774 | 17..790 | 3845 | 99.8 | Plus |
| CG9453-PH | 1140 | Spn4-RH | 1..774 | 17..790 | 3845 | 99.8 | Plus |
| CG9453-PJ | 1125 | Spn4-RJ | 1..774 | 17..790 | 3845 | 99.8 | Plus |
| CG9453-PK | 1140 | Spn4-RK | 1..774 | 17..790 | 3845 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RL | 2155 | CG9453-RL | 640..1414 | 16..790 | 3860 | 99.9 | Plus |
| Spn42Da-RK | 1789 | CG9453-RK | 274..1048 | 16..790 | 3860 | 99.9 | Plus |
| Spn42Da-RJ | 1490 | CG9453-RJ | 274..1048 | 16..790 | 3860 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877514..6878288 | 790..16 | 3860 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:18:20 has no hits.
BS18006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:21 Download gff for
BS18006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9453-PE | 91..870 | 11..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:49:08 Download gff for
BS18006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RJ | 269..1048 | 11..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:24 Download gff for
BS18006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RJ | 269..1048 | 11..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:24 Download gff for
BS18006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6877514..6878293 | 11..790 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:49:08 Download gff for
BS18006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2765019..2765798 | 11..790 | 99 | | Minus |
BS18006.pep Sequence
Translation from 16 to 1155
> BS18006.pep
MADAAHQEFARRLALFSINVYGKLSGQKPGENIVFSPFSIQTCAAMARLG
AENETATQLDQGLGLASSDPEQIAHSFHQVLAAYQDSQILRIANKIFVMD
GYQLRQEFDQLLSKQFLSAAQSVDFSKNVQAAATINNWVEQRTNHLIKDL
VPADVLNSESRLVLVNAIHFKGTWQHQFAKHLTRPDTFHLDGERTVQVPM
MSLKERFRYADLPALDAMALELPYKDSDLSMLIVLPNTKTGLPALEEKLR
LTTLSQITQSLYETKVALKLPRFKAEFQVELSEVFQKLGMSRMFSDQAEF
GKMLQSPEPLKVSAIIHKAFIEVNEEGTEAAAATGMVMCYASMLTFEPQP
VQFHVQHPFNYYIINKDSTILFAGRINKF*
BS18006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-PL | 379 | CG9453-PL | 1..379 | 1..379 | 1921 | 100 | Plus |
| Spn42Da-PK | 379 | CG9453-PK | 1..379 | 1..379 | 1921 | 100 | Plus |
| Spn42Da-PH | 379 | CG9453-PH | 1..379 | 1..379 | 1921 | 100 | Plus |
| Spn42Da-PF | 411 | CG9453-PF | 33..411 | 1..379 | 1921 | 100 | Plus |
| Spn42Da-PE | 411 | CG9453-PE | 33..411 | 1..379 | 1921 | 100 | Plus |
