Clone Sequence Records
BS18007.complete Sequence
2168 bp assembled on 2009-12-07
GenBank Submission: KX804968
> BS18007.complete
GAAGTTATCAGTCGACATGGGTTCCAACGGCGAAGAATTATTGAATTTCG
CAATGAACTCAGACAGCGTAAATACCATAAATTCAACAGCGGACGTCGCA
GAAATTGTCTTAGACACTAATTTAGAGTTCAACAAGACGATTCCTTTTCA
TCTGCCTCAGGAGTCGGACGTGGAAATGGTCTCTGTCAGATCAGCTGCCG
AACCTGATCCTAACAAATCAGATTCCAAAGCAAGTAATAAATCAGATTCC
AAATTAGATGGTAAATCGATATTAGAGTCAGGAACCAAACCTCAGGCGGC
CCCGGGGGAGGTTTTCGCTAGGAAGGCATGCCTCAAGAGGACCAACGAAT
ATCCTGCTCCGCTGAATCATACTCTCAAGAAACTGAACTGGAAGTTTAAC
CTGCGTATATTGATCTCAAATCTGTACATGAAGAGCGAGGATCGTCTTCC
GGGAGCTTGTGTTTCCAGGTGTCTTTACAATACTAGTCTGTGCACGCAAA
GACATCGGTGCTCCGCGCTTCCGGATGGCCCAAACTTTGCGGCCGTTCAG
GCGCTACGAACCACGTTGCACGGCCAGCACTACGATACATTCCTGGACAT
TCTGGAGATGATGGTGTTGCAGGGTGTCTACCCAGGCGAAGGAGTCTTTG
ACAGACTAATAGATATGGCCATGATCCTAATTGCCAAAGAGATAAGCGTA
AAGGAGCTTGGCGACATCTACAACAAACTTATACGCACCTTTTTTCTTTT
GGTCGACGCCTTTCCCCCGTGCTGGACAGCCCTGCGTCCTTACTACTTGA
GTTTTCTGGGCGTCTCGCATCCCCCCTTGCGAGAAACACGTTCAACCAAT
TCTACCCAGAAGTTGCAGTTTTACATCGATCTTTTTGAGGAAAATCTAAC
GCATTGCAGCGATGAAGAGATACGTGAAAACACCAAATTCTATGAAAAGT
TTGTGTTTAACTTCTCGGAAGAGGAGGATGCGAATATGTCCCAGGAAACG
GTCTTTCTGCGACATGTACAGCAGTATGACTGGCAGAGTGGGAAGCTTTG
TCTGGACGACTTCAAGAGAATGTCGCCCGCAGTCCGCTTGGCACGGCTCT
GCGATGTCCTGAACATGCTCACATGTGTACTGGAAATAGAGTTCCTCTCC
TGGCTGGATCATAACAGGTTGAGGCAGTCGGAGTCGGAGCTGTTTCAGGA
AAACTCCAGGTCATTTGCCTCGATCGTATTTGAAATGTCAGCAGGAACGC
GTCTCAGCGACATCGTTAAACAAATTATGAGTCTGTATGGACAGGTAGTG
GCCAAGTCCATGTACCCAGAACGCCAGAGGATTCTCCAGCGCCTTGTTTC
CCTAATTGTCGAAGTAAGCAACACGGCAGAGCTAAAGTACGAGGATAATG
CTGTGATATATCCTAGTATGGGACCCCAAACCCATCTGCTCATCGAAGAC
TTCTTCAAGATTTTTAAATCGCACAATCGCAAAAAGGTTCGCACCTACCT
AATGGCTATTCGGCAGTTGGACCCCCCATATCTCCGCTTCGAGTTCACAG
ACCACTTTTTGAAGCTCTTTTTCTTTCCCAAAAAAACTCATTTTGGACCG
GAAAAGGTGGTCGGAGAATTTAGAGCGCGTCAATGGGTAAAGTACAATCT
TAAAAGTGAGATTGAGGATGACGATGACGAGCAGTTGTCGCGTGAGGATT
ACCTAGCATTACTCCTTAGCGCCTTAAAAGACTATGACAAGTGGTTAAAT
CTTGGAGGCTTTTGGAAGTACCTAATGAGTAAGGAGCTCGTGCAGCCGTT
GACTGCGAGGATCAGTCCTGTGGGAAGAGTTGTGCGCGAGGCGCCGAAGG
TGTTCAGGCTCGATGCGTTGGAGGAGGAGGTACACACCTGGAAGGAGCGC
ATGAGCACCAAAGTAATTACAGGTCGGGAAAAGGTGAACCTGCCGGTGGC
CAGTATCAATATGGCCAAGATGTGTGTGCGCTATGGCGAGGATGTGAGAC
AAATGAGAGTTTTGCGACAACTCCTTCAAAACGAAGTTTACAAGGAGGTC
GATGTGTCGGACTGGTTAACCTATCTGAACAACTTTCTGAGCTATGAAGA
GTCCATGTCTCCAGTAGACTCTGCGTCTTCCTCCTTATTGGGAGGCATAT
GAAAGCTTTCTAGACCAT
BS18007.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-RA | 2136 | CG5664-PA | 1..2136 | 17..2152 | 10680 | 100 | Plus |
| CG5664-RB | 1332 | CG5664-PB | 1..1323 | 17..1339 | 6615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-RA | 2621 | CG5664-RA | 195..2330 | 17..2152 | 10680 | 100 | Plus |
| CG5664-RB | 2630 | CG5664-RB | 195..2339 | 17..2152 | 10555 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21438919..21439733 | 2152..1338 | 4075 | 100 | Minus |
| 3L | 28110227 | 3L | 21439789..21440455 | 1339..673 | 3335 | 100 | Minus |
| 3L | 28110227 | 3L | 21440513..21441169 | 673..17 | 3285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:02:53 has no hits.
BS18007.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:56 Download gff for
BS18007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 155..2289 | 17..2151 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:32 Download gff for
BS18007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 195..2329 | 17..2151 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:32 Download gff for
BS18007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 155..2289 | 17..2151 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:46 Download gff for
BS18007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 195..2329 | 17..2151 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:46 Download gff for
BS18007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21438920..21439731 | 1340..2151 | 100 | <- | Minus |
| 3L | 21439789..21440454 | 674..1339 | 100 | <- | Minus |
| 3L | 21440513..21441169 | 17..673 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:32 Download gff for
BS18007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21432020..21432831 | 1340..2151 | 100 | <- | Minus |
| arm_3L | 21432889..21433554 | 674..1339 | 100 | <- | Minus |
| arm_3L | 21433613..21434269 | 17..673 | 100 | | Minus |
BS18007.3prime Sequence
832 bp (712 high quality bases) assembled on 2007-06-06
> BS18007.3prime
ATGGTCTAGAAAGCTTTCATATGCCTCCCAATAAGGAGGAAGACGCAGAG
TCTACTGGAGACATGGACTCTTCATAGCTCAGAAAGTTGTTCAGATAGGT
TAACCAGTCCGACACATCGACCTCCTTGTAAACTTCGTTTTGAAGGAGTT
GTCGCAAAACTCTCATTTGTCTCACATCCTCGCCATAGCGCACACACATC
TTGGCCATATTGATACTGGCCACCGGCAGGTTCACCTTTTCCCGACCTGT
AATTACTTTGGTGCTCATGCGCTCCTTCCAGGTGTGTACCTCCTCCTCCA
ACGCATCGAGCCTGAACACCTTCGGCGCCTCGCGCACAACTCTTCCCACA
GGACTGATCCTCGCAGTCAACGGCTGCACGAGCTCCTTACTCATTAGGTA
CTTCCAAAAGCCTCCAAGATTTAACCACTTGTCATAGTCTTTTAAGGCGC
TAAGGAGTAATGCTAGGTAATCCTCACGCGACAACTGCTCGTCATCGTCA
TCCTCAATCTCACTTTTAAGATTGTACTTTACCCATTGACGCGCTCTAAA
TTCTCCGACCACCTTTTCCGGTCCAAAATGAGTTTTTTTGGGAAAGAAAA
AGAGCTTCAAAAAGTGGTCTGTGAACTCGAAGCGGAGATATGGGGGGTCC
AACTGCCGAATAGCCATTAGGTAGGTGCGAACCTTTTTGCGATTGTGCGA
TTTAAAAATCTTGAAGAAGTCTTCGATGAGCAGATGGGTTTGGGGTCCAT
ACTAGGATATATCACAGCATTATCCTCGTACTTTAGCTCTGCGGTGTTGC
TTACTTCGACAATTAGGAAAACAGGGCGCTGG
BS18007.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-PA | 2136 | CG5664-RA | 1405..2136 | 748..17 | 3660 | 100 | Minus |
| CG5664-PA | 2136 | CG5664-RA | 1320..1405 | 832..747 | 355 | 96.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-RA | 2621 | CG5664-RA | 1514..2330 | 832..17 | 4015 | 99.5 | Minus |
| CG5664-RB | 2630 | CG5664-RB | 1525..2339 | 830..17 | 4005 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21438919..21439733 | 17..830 | 3980 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:31:32 has no hits.
BS18007.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:25 Download gff for
BS18007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-PA | 1320..2136 | 17..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:51 Download gff for
BS18007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 1514..2334 | 13..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:09 Download gff for
BS18007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 1514..2334 | 13..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:09 Download gff for
BS18007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21438915..21439733 | 13..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:51 Download gff for
BS18007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21432015..21432833 | 13..832 | 99 | | Plus |
BS18007.5prime Sequence
956 bp (800 high quality bases) assembled on 2007-06-06
> BS18007.5prime
GAAGTTATCAGTCGACATGGGTTCCAACGGCGAAGAATTATTGAATTTCG
CAATGAACTCAGACAGCGTAAATACCATAAATTCAACAGCGGACGTCGCA
GAAATTGTCTTAGACACTAATTTAGAGTTCAACAAGACGATTCCTTTTCA
TCTGCCTCAGGAGTCGGACGTGGAAATGGTCTCTGTCAGATCAGCTGCCG
AACCTGATCCTAACAAATCAGATTCCAAAGCAAGTAATAAATCAGATTCC
AAATTAGATGGTAAATCGATATTAGAGTCAGGAACCAAACCTCAGGCGGC
CCCGGGGGAGGTTTTCGCTAGGAAGGCATGCCTCAAGAGGACCAACGAAT
ATCCTGCTCCGCTGAATCATACTCTCAAGAAACTGAACTGGAAGTTTAAC
CTGCGTATATTGATCTCAAATCTGTACATGAAGAGCGAGGATCGTCTTCC
GGGAGCTTGTGTTTCCAGGTGTCTTTACAATACTAGTCTGTGCACGCAAA
GACATCGGTGCTCCGCGCTTCCGGATGGCCCAAACTTTGCGGCCGTTCAG
GCGCTACGAACCACGTTGCACGGCCAGCACTACGATACATTCCTGGACAT
TCTGGAGATGATGGTGTTGCAGGGTGTCTACCCAGGCGAAGGAGTCTTTG
ACAGACTAATAGATATGGCCATGATCCTAATTGCCAAAGAGATAAGCGTA
AAGGAGCTTGGCGACATCTACAACAAACTTATACGCACCTTTTTTCTTTT
GGTCGACGCCTTTCCCCCGTGCTGGACAGCCCTGCGTCCTTACTACTTGA
GTTTTTCTGGGCGTCTCGCATCCCCCCTTGCGAGAAACACGTTTCAACCA
TTCTACCCAGAAGTTGCAGTTTTACATCGATCTTTTTGAGGAAAATCTAA
CGCATTGCAGCGATGAAGAGATACGTGAAAACACAAATTCTATGAAAAGT
TTGTGT
BS18007.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-PA | 2136 | CG5664-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
| CG5664-PA | 2136 | CG5664-RA | 833..917 | 850..934 | 425 | 100 | Plus |
| CG5664-PA | 2136 | CG5664-RA | 786..826 | 803..843 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-RB | 2630 | CG5664-RB | 195..1134 | 17..956 | 4610 | 99.6 | Plus |
| CG5664-RA | 2621 | CG5664-RA | 195..1134 | 17..956 | 4610 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21440513..21441169 | 673..17 | 3285 | 100 | Minus |
| 3L | 28110227 | 3L | 21440172..21440455 | 956..673 | 1265 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-05 14:02:40 has no hits.
BS18007.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:30 Download gff for
BS18007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-PA | 1..940 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:20 Download gff for
BS18007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 195..1134 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:16:41 Download gff for
BS18007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 195..1134 | 17..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:16:41 Download gff for
BS18007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21440172..21440454 | 674..956 | 98 | <- | Minus |
| 3L | 21440513..21441169 | 17..673 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:20 Download gff for
BS18007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21433272..21433554 | 674..956 | 98 | <- | Minus |
| arm_3L | 21433613..21434269 | 17..673 | 100 | | Minus |
BS18007.pep Sequence
Translation from 16 to 2151
> BS18007.pep
MGSNGEELLNFAMNSDSVNTINSTADVAEIVLDTNLEFNKTIPFHLPQES
DVEMVSVRSAAEPDPNKSDSKASNKSDSKLDGKSILESGTKPQAAPGEVF
ARKACLKRTNEYPAPLNHTLKKLNWKFNLRILISNLYMKSEDRLPGACVS
RCLYNTSLCTQRHRCSALPDGPNFAAVQALRTTLHGQHYDTFLDILEMMV
LQGVYPGEGVFDRLIDMAMILIAKEISVKELGDIYNKLIRTFFLLVDAFP
PCWTALRPYYLSFLGVSHPPLRETRSTNSTQKLQFYIDLFEENLTHCSDE
EIRENTKFYEKFVFNFSEEEDANMSQETVFLRHVQQYDWQSGKLCLDDFK
RMSPAVRLARLCDVLNMLTCVLEIEFLSWLDHNRLRQSESELFQENSRSF
ASIVFEMSAGTRLSDIVKQIMSLYGQVVAKSMYPERQRILQRLVSLIVEV
SNTAELKYEDNAVIYPSMGPQTHLLIEDFFKIFKSHNRKKVRTYLMAIRQ
LDPPYLRFEFTDHFLKLFFFPKKTHFGPEKVVGEFRARQWVKYNLKSEIE
DDDDEQLSREDYLALLLSALKDYDKWLNLGGFWKYLMSKELVQPLTARIS
PVGRVVREAPKVFRLDALEEEVHTWKERMSTKVITGREKVNLPVASINMA
KMCVRYGEDVRQMRVLRQLLQNEVYKEVDVSDWLTYLNNFLSYEESMSPV
DSASSSLLGGI*
BS18007.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-PA | 711 | CG5664-PA | 1..711 | 1..711 | 3686 | 100 | Plus |
| CG5664-PB | 443 | CG5664-PB | 1..441 | 1..441 | 2289 | 100 | Plus |
