Clone Sequence Records
BS18011.complete Sequence
2513 bp assembled on 2009-12-07
GenBank Submission: KX800547
> BS18011.complete
GAAGTTATCAGTCGACATGCCCAGTGAAAATCATCTGCATCACCATCACT
TGGGACACACTGGTGGATTATCTCCGCATCATCATCACTTGTTGGACACA
TCCTGCAGCAATACGGGAATCACTGTGACAGAACATCATCATGGTCTCGA
CTTGACCACCACACTGCGCAGTGAACTGGCTGCGTTGTCCTACAAAAAGG
AGCGACTTACGGGGGAGCTTGCTGAAGCGCGTGCAGCATTGTGCAGCAAA
GATGCGGATATCGAGAATCTGCGAGCCCAGGCTGCTCGGCAGACTGCCCT
CATCGGATCCCTCCAGAGTCGTCTGCAAAACTCGGAGAGCAGGGAGCAGG
CTGTCCAGGCCCGATGTGATTCCACCATTCAGACGGTGCAGCGGGAGAAG
CGTAGCTCCGACGAGCGCAACAAAGAGCTAATCTGCAAGATACAGCATCT
GGAAACGCATATGGCCAGTGAGGAATCGCAAAAGGAGCAGATCAAGGCTC
AGCTGCACGATCTCCTGCGACGCCTTAGCATCACTTTGGGAATGGATGTG
TGCGATGGCAATCAGAATTCCCATGCCACACCCGAGTGCATCATCTCGCG
GGCCGAGGAGGTGATGGTGGAGCTGCAAAGGACGAAAGCCAAGGTCAGTT
CCACCTGCGACACGCTCAGCTCCTGCGAAAATGAACTGCTCAACTTGAAG
TCGCTGGCCAACATTGAGAAGCAGCGGCTCACGGCCCAACTTGATGGAGC
TGGCAATCACAACCACGAGTTGGAAGGACGCTGTCGCCAATACGAAAGGG
ATCTTCAGATCCAAAGAGATCGCTTGACTGAATCGGAAATCAACGGCGAG
AAGCTCAAGGAAGAGCTGCGCGGCTTTGAGTCGCGATGCCATCGTTTGCA
AAACAACCTGGACCGGACTCAGGGCGATCGTCTGCAGTTCTTGCGGGGAT
TGAGCAATCTCTTGAATGTTCCCGAACCGTGCGAAACGCTCATCAAGGAC
AAGCTGAGAGAGATTCTGGCGGAGAACCAGGCCATGCATGCGCAAATGCA
CTCTCTGCGAGATCAGCTGAACTCGGAGCATGAGAAGCTTAAGGAAACCC
AACAGACCACCGAATGTCGCCTCCGTTCTGGCGAGGCTCAGAAATGTGAG
CTAACTGAGCGCTTGGAGAAGTGCCATGCCGAGATCCATACTCTTCGAAA
GGATCACATGGGTCTATCGGAGTTCCTGCAGCGACTGGCCCTCGCGATGA
ACTGGGGTGAGTGCTCTGCCCCTCCGGCTCTTGGAACTGATACCAATCTA
ATGGCGGAGAACTTGCTTGAGAGAGCCGAGAGACTCGCCGCTCACTGCGA
CCACGAGGCACCTCATCATCATCATCATCATCACAGTCCGGATAAGGGTT
GCTGTGATCACGGACATGGTCATGGGAAACTTCGCCGCGAGAGATCCTGT
CATGACATTCCCCTCAAGGAAAGCAGCAGTGTCTACAACCTGCAGCGACG
TGTTCGAGTTCTCAGGGAGCAAGTGCAGCGACGGGATCTCCACCTGGAGC
TACTGCGTCGCAAGCTGGCCATCATAGAGGACGGTGCGCGAGGAAAGTGC
ATGTTGCAGGGTGAACGGGATGAGGCGGTTTGCCGGGCCAAGAAGGCGGC
CAAGCAGGTGGACAAGTTGAGTGCCCAGCTGGCCGATGCCCGATCTCAGA
TAGCAGAGGTCAAGGCCCAGCTAGCCGAGGCTGTGGAGTATAAGATCACC
TCGTTGGAGAGGGCCAGAAAGATCGATGAGCTGACCACACAGATATGCGA
TCTGGAGGATGAGAAGACGCGCCTGCTCTCCCAACTTAATGCCCTGAAGG
AGCGCCTCAAGTCCTCCTGTGAATCCAATCAGAATCGCAGATGCCGCGAT
GAGGCGCTAATAAATTCTATGCGCGATGATGTCAGTCGCTTGAGCTCCCA
ACTCTCGGATGCCAATCAGCGGCTTTCGCATTTGCAATCCTTCCGCACAT
CGGTGGCCAGGACACTGCATCTTCGCGACCTGCCGGAAACGGATCTTCTG
CATCGCCTGCAGGCCCTGTGCTCGGCACATCAGGAGTTCACAATGCTTTC
GAAACGCTATGAGACAGCTTCGCCAGTTGGAGATCATCCGTGTCCTCGGT
TCGATGATCCCATACCGCCATCCAGCCACTGTCGCCCGCCAAGGGAGCTC
AGTCCTCCGCCAACTTCCTTCCACCATAAGGCGACCATCCATTCAGGCAG
CAGCCATCACTCACCACCGTCTGAGCATCATCATGGTTCCAGCAGCCATG
TGCACAATCACCACGGACATGGACACGGACACGGTCACTCATCGCATTCC
AGGCGGCAGCGAAGTAAAAGCCGGGACAAACGACTCCACGATGAGTGCTT
CGACACGGATGTGCATCGACTGCACCATGGCTGCAAGGAGGAGCTACTGG
CCACCGGATCGGAGGATGACTATGACTTCAAGAGCAAATACTGCTAGAAG
CTTTCTAGACCAT
BS18011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43338-RA | 2481 | CG43338-PA | 1..2481 | 17..2497 | 12390 | 100 | Plus |
| CG43338-RB | 2562 | CG43338-PB | 158..2562 | 93..2497 | 12025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43338-RA | 2631 | CG43338-RA | 78..2559 | 17..2498 | 12395 | 100 | Plus |
| CG43338-RB | 2694 | CG43338-RB | 217..2622 | 93..2498 | 12030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18667607..18668480 | 1915..1042 | 4370 | 100 | Minus |
| 2L | 23513712 | 2L | 18668541..18669367 | 1042..216 | 4135 | 100 | Minus |
| 2L | 23513712 | 2L | 18666964..18667546 | 2498..1916 | 2915 | 100 | Minus |
| 2L | 23513712 | 2L | 18669438..18669562 | 217..93 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 18669888..18669966 | 95..17 | 380 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:16:27 has no hits.
BS18011.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:43 Download gff for
BS18011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31790-RA | 74..2554 | 17..2497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:19 Download gff for
BS18011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 78..2558 | 17..2497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:46 Download gff for
BS18011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31790-RA | 74..2554 | 17..2497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:54 Download gff for
BS18011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 78..2558 | 17..2497 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:54 Download gff for
BS18011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18666965..18667546 | 1916..2497 | 100 | <- | Minus |
| 2L | 18667607..18668479 | 1043..1915 | 100 | <- | Minus |
| 2L | 18668541..18669365 | 218..1042 | 100 | <- | Minus |
| 2L | 18669438..18669563 | 92..217 | 99 | <- | Minus |
| 2L | 18669892..18669966 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:19 Download gff for
BS18011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18667607..18668479 | 1043..1915 | 100 | <- | Minus |
| arm_2L | 18666965..18667546 | 1916..2497 | 100 | <- | Minus |
| arm_2L | 18668541..18669365 | 218..1042 | 100 | <- | Minus |
| arm_2L | 18669438..18669563 | 92..217 | 99 | <- | Minus |
| arm_2L | 18669892..18669966 | 17..91 | 100 | | Minus |
BS18011.3prime Sequence
836 bp (792 high quality bases) assembled on 2007-06-06
> BS18011.3prime
ATGGTCTAGAAAGCTTCTAGCAGTATTTGCTCTTGAAGTCATAGTCATCC
TCCGATCCGGTGGCCAGTAGCTCCTCCTTGCAGCCATGGTGCAGTCGATG
CACATCCGTGTCGAAGCACTCATCGTGGAGTCGTTTGTCCCGGCTTTTAC
TTCGCTGCCGCCTGGAATGCGATGAGTGACCGTGTCCGTGTCCATGTCCG
TGGTGATTGTGCACATGGCTGCTGGAACCATGATGATGCTCAGACGGTGG
TGAGTGATGGCTGCTGCCTGAATGGATGGTCGCCTTATGGTGGAAGGAAG
TTGGCGGAGGACTGAGCTCCCTTGGCGGGCGACAGTGGCTGGATGGCGGT
ATGGGATCATCGAACCGAGGACACGGATGATCTCCAACTGGCGAAGCTGT
CTCATAGCGTTTCGAAAGCATTGTGAACTCCTGATGTGCCGAGCACAGGG
CCTGCAGGCGATGCAGAAGATCCGTTTCCGGCAGGTCGCGAAGATGCAGT
GTCCTGGCCACCGATGTGCGGAAGGATTGCAAATGCGAAAGCCGCTGATT
GGCATCCGAGAGTTGGGAGCTCAAGCGACTGACATCATCGCGCATAGAAT
TTATTAGCGCCTCATCGCGGCATCTGCGATTCTGATTGGATTCACAGGAG
GACTTGAGGCGCTCCTTCAGGGCATTAAGTTGGGAGAGCAGGCGCGTCTT
CTCATCCTCCAGATCGCATATCTGTGTGGTCAGCTCATCGATCTTTCTGG
CCCTCTCCAACGAGGTGATCTTATACTCCACAGCCTCGGCTAGCTGGGGC
TTGACCTCTGCTATCTGAGATCGGGGATCGGCCAGC
BS18011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31790-PA | 2481 | CG31790-RA | 1662..2481 | 836..17 | 4050 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43338-RB | 2694 | CG43338-RB | 1802..2622 | 836..16 | 4075 | 99.8 | Minus |
| CG43338-RA | 2631 | CG43338-RA | 1739..2559 | 836..16 | 4075 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18666964..18667546 | 16..598 | 2915 | 100 | Plus |
| 2L | 23513712 | 2L | 18667607..18667844 | 599..836 | 1160 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:38:13 has no hits.
BS18011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:50 Download gff for
BS18011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31790-PA | 1662..2481 | 17..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:31 Download gff for
BS18011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 1739..2565 | 7..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:41 Download gff for
BS18011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 1739..2565 | 7..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:41 Download gff for
BS18011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18666958..18667546 | 7..598 | 99 | <- | Plus |
| 2L | 18667607..18667844 | 599..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:31 Download gff for
BS18011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18666958..18667546 | 7..598 | 99 | <- | Plus |
| arm_2L | 18667607..18667844 | 599..836 | 99 | | Plus |
BS18011.5prime Sequence
841 bp (791 high quality bases) assembled on 2007-06-06
> BS18011.5prime
GAAGTTATCAGTCGACATGCCCAGTGAAAATCATCTGCATCACCATCACT
TGGGACACACTGGTGGATTATCTCCGCATCATCATCACTTGTTGGACACA
TCCTGCAGCAATACGGGAATCACTGTGACAGAACATCATCATGGTCTCGA
CTTGACCACCACACTGCGCAGTGAACTGGCTGCGTTGTCCTACAAAAAGG
AGCGACTTACGGGGGAGCTTGCTGAAGCGCGTGCAGCATTGTGCAGCAAA
GATGCGGATATCGAGAATCTGCGAGCCCAGGCTGCTCGGCAGACTGCCCT
CATCGGATCCCTCCAGAGTCGTCTGCAAAACTCGGAGAGCAGGGAGCAGG
CTGTCCAGGCCCGATGTGATTCCACCATTCAGACGGTGCAGCGGGAGAAG
CGTAGCTCCGACGAGCGCAACAAAGAGCTAATCTGCAAGATACAGCATCT
GGAAACGCATATGGCCAGTGAGGAATCGCAAAAGGAGCAGATCAAGGCTC
AGCTGCACGATCTCCTGCGACGCCTTAGCATCACTTTGGGAATGGATGTG
TGCGATGGCAATCAGAATTCCCATGCCACACCCGAGTGCATCATCTCGCG
GGCCGAGGAGGTGATGGTGGAGCTGCAAAGGACGAAAGCCAAGGTCAGTT
CCACCTGCGACACGCTCAGCTCCTGCGAAAATGAACTGCTCAACTTGAAG
TCGCTGGCCAACATTGAGAAGCAGCGGCTCACGGCCCAACTTGATGGAGC
TGGCAATCACAACCACGAGTTGGAAGGACGCTGTCGCCAATACGAAAGGG
ATCTTCAGATCCAAAGAGATCGCTTGACTGAATCGGAAATC
BS18011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31790-PA | 2481 | CG31790-RA | 1..825 | 17..841 | 4100 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43338-RA | 2631 | CG43338-RA | 78..902 | 17..841 | 4110 | 99.9 | Plus |
| CG43338-RB | 2694 | CG43338-RB | 217..965 | 93..841 | 3745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18668742..18669367 | 841..216 | 3130 | 100 | Minus |
| 2L | 23513712 | 2L | 18669438..18669562 | 217..93 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 18669888..18669966 | 95..17 | 380 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:53:27 has no hits.
BS18011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:58:55 Download gff for
BS18011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31790-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:55 Download gff for
BS18011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 78..902 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:03 Download gff for
BS18011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 78..902 | 17..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:47:03 Download gff for
BS18011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18668742..18669365 | 218..841 | 100 | <- | Minus |
| 2L | 18669438..18669563 | 92..217 | 99 | <- | Minus |
| 2L | 18669892..18669966 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:55 Download gff for
BS18011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18668742..18669365 | 218..841 | 100 | <- | Minus |
| arm_2L | 18669438..18669563 | 92..217 | 99 | <- | Minus |
| arm_2L | 18669892..18669966 | 17..91 | 100 | | Minus |
BS18011.pep Sequence
Translation from 16 to 2496
> BS18011.pep
MPSENHLHHHHLGHTGGLSPHHHHLLDTSCSNTGITVTEHHHGLDLTTTL
RSELAALSYKKERLTGELAEARAALCSKDADIENLRAQAARQTALIGSLQ
SRLQNSESREQAVQARCDSTIQTVQREKRSSDERNKELICKIQHLETHMA
SEESQKEQIKAQLHDLLRRLSITLGMDVCDGNQNSHATPECIISRAEEVM
VELQRTKAKVSSTCDTLSSCENELLNLKSLANIEKQRLTAQLDGAGNHNH
ELEGRCRQYERDLQIQRDRLTESEINGEKLKEELRGFESRCHRLQNNLDR
TQGDRLQFLRGLSNLLNVPEPCETLIKDKLREILAENQAMHAQMHSLRDQ
LNSEHEKLKETQQTTECRLRSGEAQKCELTERLEKCHAEIHTLRKDHMGL
SEFLQRLALAMNWGECSAPPALGTDTNLMAENLLERAERLAAHCDHEAPH
HHHHHHSPDKGCCDHGHGHGKLRRERSCHDIPLKESSSVYNLQRRVRVLR
EQVQRRDLHLELLRRKLAIIEDGARGKCMLQGERDEAVCRAKKAAKQVDK
LSAQLADARSQIAEVKAQLAEAVEYKITSLERARKIDELTTQICDLEDEK
TRLLSQLNALKERLKSSCESNQNRRCRDEALINSMRDDVSRLSSQLSDAN
QRLSHLQSFRTSVARTLHLRDLPETDLLHRLQALCSAHQEFTMLSKRYET
ASPVGDHPCPRFDDPIPPSSHCRPPRELSPPPTSFHHKATIHSGSSHHSP
PSEHHHGSSSHVHNHHGHGHGHGHSSHSRRQRSKSRDKRLHDECFDTDVH
RLHHGCKEELLATGSEDDYDFKSKYC*
BS18011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43338-PA | 826 | CG31790-PA | 1..826 | 1..826 | 4359 | 100 | Plus |
| CG43338-PB | 853 | CG43338-PB | 53..853 | 26..826 | 4202 | 100 | Plus |
| GM130-PA | 795 | CG11061-PA | 70..652 | 13..503 | 172 | 21.7 | Plus |
| brp-PH | 1740 | CG42344-PH | 470..1117 | 67..653 | 170 | 21.9 | Plus |
| brp-PE | 1740 | CG42344-PE | 470..1117 | 67..653 | 170 | 21.9 | Plus |
