Clone BS18015 Report

Search the DGRC for BS18015

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptNDUFA8-RA
Protein status:BS18015.pep: full length peptide match
Sequenced Size:560

Clone Sequence Records

BS18015.complete Sequence

560 bp assembled on 2010-02-09

GenBank Submission: KX800302

> BS18015.complete
GAAGTTATCAGTCGACATGGTCATCACCAACAACACAACACTGCCCGAGG
AGTCGGAGCTGAACGTCCAGGAGCTAAATCTATCGTCGGCGGCCTTACGG
GCAGGCGCCTTCCATTTGGGCAAGCAATGCGAGCAGGCCAATAATGAGTT
TATGCTGTGCCGGCAGGAGCTGGATGACCCGCGAGCCTGTTTGGCGGAGG
GCAAAGCCGTGACCAGCTGCGCCCTGGACTTCTTCCGCAAGGTGAAGAAG
ACCTGCCATGAGGAGTTCACGCAGTACGCCACCTGCCTGGATAAGAGCAG
CGGTACTATGGCTTTTTCACATTGCCGCAAGACCCAGGGAGTGTTCGACA
AGTGTATCAAAGATAACTTCGACTGGGATCGTCCCTCCTATGGATACTTC
TCGAGGGCCAAGGTCATCCAATCAGCTCGGGAAGCACCCAAGAAGGAGGA
GAAGGTCTCCTATCCCGATGCCACCCCCGGTTTGCCCGAGGATTACCCCA
AGCCGCCAGCAAAGTACGGTTCCCGCTTCCACTGGCTGGAGTAGAAGCTT
TCTAGACCAT

BS18015.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFA8-RD 528 CG3683-PD 1..528 17..544 2640 100 Plus
NDUFA8-RC 528 CG3683-PC 1..528 17..544 2640 100 Plus
NDUFA8-RB 528 CG3683-PB 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFA8-RD 666 CG3683-RD 68..596 17..545 2645 100 Plus
NDUFA8-RC 683 CG3683-RC 85..613 17..545 2645 100 Plus
NDUFA8-RB 668 CG3683-RB 70..598 17..545 2645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24664854..24665029 146..321 880 100 Plus
2R 25286936 2R 24665235..24665369 411..545 675 100 Plus
2R 25286936 2R 24664551..24664680 17..146 650 100 Plus
2R 25286936 2R 24665093..24665185 322..414 465 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:06:38 has no hits.

BS18015.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:25 Download gff for BS18015.complete
Subject Subject Range Query Range Percent Splice Strand
CG3683-RC 1..528 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:07 Download gff for BS18015.complete
Subject Subject Range Query Range Percent Splice Strand
CG3683-RA 76..603 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:29 Download gff for BS18015.complete
Subject Subject Range Query Range Percent Splice Strand
NDUFA8-RB 70..597 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:25 Download gff for BS18015.complete
Subject Subject Range Query Range Percent Splice Strand
CG3683-RA 76..614 17..555 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:04 Download gff for BS18015.complete
Subject Subject Range Query Range Percent Splice Strand
NDUFA8-RB 70..597 17..544 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:04 Download gff for BS18015.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24664854..24665029 146..321 100 -> Plus
2R 24665093..24665183 322..412 100 -> Plus
2R 24665237..24665368 413..544 100   Plus
2R 24664551..24664679 17..145 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:29 Download gff for BS18015.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20552074..20552202 17..145 100 -> Plus
arm_2R 20552377..20552552 146..321 100 -> Plus
arm_2R 20552616..20552706 322..412 100 -> Plus
arm_2R 20552760..20552891 413..544 100   Plus

BS18015.3prime Sequence

558 bp (558 high quality bases) assembled on 2007-06-06

> BS18015.3prime
ATGGTCTAGAAAGCTTCTACTCCAGCCAGTGGAAGCGGGAACCGTACTTT
GCTGGCGGCTTGGGGTAATCCTCGGGCAAACCGGGGGTGGCATCGGGATA
GGAGACCTTCTCCTCCTTCTTGGGTGCTTCCCGAGCTGATTGGATGACCT
TGGCCCTCGAGAAGTATCCATAGGAGGGACGATCCCAGTCGAAGTTATCT
TTGATACACTTGTCGAACACTCCCTGGGTCTTGCGGCAATGTGAAAAAGC
CATAGTACCGCTGCTCTTATCCAGGCAGGTGGCGTACTGCGTGAACTCCT
CATGGCAGGTCTTCTTCACCTTGCGGAAGAAGTCCAGGGCGCAGCTGGTC
ACGGCTTTGCCCTCCGCCAAACAGGCTCGCGGGTCATCCAGCTCCTGCCG
GCACAGCATAAACTCATTATTGGCCTGCTCGCATTGCTTGCCCAAATGGA
AGGCGCCTGCCCGTAAGGCCGCCGACGATAGATTTAGCTCCTGGACGTTC
AGCTCCGACTCCTCGGGCAGTGTTGTGTTGTTGGTGATGACCATGTCGAC
TGATAACT

BS18015.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3683-PA 528 CG3683-RA 1..528 544..17 2640 100 Minus
CG3683-PB 528 CG3683-RB 1..528 544..17 2640 100 Minus
CG3683-PC 528 CG3683-RC 1..528 544..17 2640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFA8-RD 666 CG3683-RD 68..596 544..16 2645 100 Minus
NDUFA8-RC 683 CG3683-RC 85..613 544..16 2645 100 Minus
NDUFA8-RB 668 CG3683-RB 70..598 544..16 2645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24664854..24665029 415..240 880 100 Minus
2R 25286936 2R 24665235..24665369 150..16 675 100 Minus
2R 25286936 2R 24664551..24664680 544..415 650 100 Minus
2R 25286936 2R 24665093..24665185 239..147 465 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:16:04 has no hits.

BS18015.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:02 Download gff for BS18015.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3683-PC 1..528 17..544 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:46 Download gff for BS18015.3prime
Subject Subject Range Query Range Percent Splice Strand
NDUFA8-RB 70..608 6..544 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:30 Download gff for BS18015.3prime
Subject Subject Range Query Range Percent Splice Strand
NDUFA8-RB 70..608 6..544 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:30 Download gff for BS18015.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24664551..24664679 416..544 100 -> Minus
2R 24664854..24665029 240..415 100 -> Minus
2R 24665093..24665183 149..239 100 -> Minus
2R 24665237..24665379 6..148 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:46 Download gff for BS18015.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20552074..20552202 416..544 100 -> Minus
arm_2R 20552377..20552552 240..415 100 -> Minus
arm_2R 20552616..20552706 149..239 100 -> Minus
arm_2R 20552760..20552902 6..148 97   Minus

BS18015.5prime Sequence

558 bp (558 high quality bases) assembled on 2007-06-06

> BS18015.5prime
GAAGTTATCAGTCGACATGGTCATCACCAACAACACAACACTGCCCGAGG
AGTCGGAGCTGAACGTCCAGGAGCTAAATCTATCGTCGGCGGCCTTACGG
GCAGGCGCCTTCCATTTGGGCAAGCAATGCGAGCAGGCCAATAATGAGTT
TATGCTGTGCCGGCAGGAGCTGGATGACCCGCGAGCCTGTTTGGCGGAGG
GCAAAGCCGTGACCAGCTGCGCCCTGGACTTCTTCCGCAAGGTGAAGAAG
ACCTGCCATGAGGAGTTCACGCAGTACGCCACCTGCCTGGATAAGAGCAG
CGGTACTATGGCTTTTTCACATTGCCGCAAGACCCAGGGAGTGTTCGACA
AGTGTATCAAAGATAACTTCGACTGGGATCGTCCCTCCTATGGATACTTC
TCGAGGGCCAAGGTCATCCAATCAGCTCGGGAAGCACCCAAGAAGGAGGA
GAAGGTCTCCTATCCCGATGCCACCCCCGGTTTGCCCGAGGATTACCCCA
AGCCGCCAGCAAAGTACGGTTCCCGCTTCCACTGGCTGGAGTAGAAGCTT
TCTAGACC

BS18015.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3683-PA 528 CG3683-RA 1..528 17..544 2640 100 Plus
CG3683-PB 528 CG3683-RB 1..528 17..544 2640 100 Plus
CG3683-PC 528 CG3683-RC 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFA8-RD 666 CG3683-RD 68..596 17..545 2645 100 Plus
NDUFA8-RC 683 CG3683-RC 85..613 17..545 2645 100 Plus
NDUFA8-RB 668 CG3683-RB 70..598 17..545 2645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24664854..24665029 146..321 880 100 Plus
2R 25286936 2R 24665235..24665369 411..545 675 100 Plus
2R 25286936 2R 24664551..24664680 17..146 650 100 Plus
2R 25286936 2R 24665093..24665185 322..414 465 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:50:12 has no hits.

BS18015.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:07 Download gff for BS18015.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3683-PC 1..528 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:22:12 Download gff for BS18015.5prime
Subject Subject Range Query Range Percent Splice Strand
NDUFA8-RB 70..608 17..555 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:23 Download gff for BS18015.5prime
Subject Subject Range Query Range Percent Splice Strand
NDUFA8-RB 70..608 17..555 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:23 Download gff for BS18015.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24664551..24664679 17..145 100 -> Plus
2R 24664854..24665029 146..321 100 -> Plus
2R 24665093..24665183 322..412 100 -> Plus
2R 24665237..24665379 413..555 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:22:12 Download gff for BS18015.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20552074..20552202 17..145 100 -> Plus
arm_2R 20552377..20552552 146..321 100 -> Plus
arm_2R 20552616..20552706 322..412 100 -> Plus
arm_2R 20552760..20552902 413..555 97   Plus

BS18015.pep Sequence

Translation from 16 to 543

> BS18015.pep
MVITNNTTLPEESELNVQELNLSSAALRAGAFHLGKQCEQANNEFMLCRQ
ELDDPRACLAEGKAVTSCALDFFRKVKKTCHEEFTQYATCLDKSSGTMAF
SHCRKTQGVFDKCIKDNFDWDRPSYGYFSRAKVIQSAREAPKKEEKVSYP
DATPGLPEDYPKPPAKYGSRFHWLE*

BS18015.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFA8-PD 175 CG3683-PD 1..175 1..175 947 100 Plus
NDUFA8-PC 175 CG3683-PC 1..175 1..175 947 100 Plus
NDUFA8-PB 175 CG3683-PB 1..175 1..175 947 100 Plus
NDUFA8-PA 175 CG3683-PA 1..175 1..175 947 100 Plus