Clone Sequence Records
BS18015.complete Sequence
560 bp assembled on 2010-02-09
GenBank Submission: KX800302
> BS18015.complete
GAAGTTATCAGTCGACATGGTCATCACCAACAACACAACACTGCCCGAGG
AGTCGGAGCTGAACGTCCAGGAGCTAAATCTATCGTCGGCGGCCTTACGG
GCAGGCGCCTTCCATTTGGGCAAGCAATGCGAGCAGGCCAATAATGAGTT
TATGCTGTGCCGGCAGGAGCTGGATGACCCGCGAGCCTGTTTGGCGGAGG
GCAAAGCCGTGACCAGCTGCGCCCTGGACTTCTTCCGCAAGGTGAAGAAG
ACCTGCCATGAGGAGTTCACGCAGTACGCCACCTGCCTGGATAAGAGCAG
CGGTACTATGGCTTTTTCACATTGCCGCAAGACCCAGGGAGTGTTCGACA
AGTGTATCAAAGATAACTTCGACTGGGATCGTCCCTCCTATGGATACTTC
TCGAGGGCCAAGGTCATCCAATCAGCTCGGGAAGCACCCAAGAAGGAGGA
GAAGGTCTCCTATCCCGATGCCACCCCCGGTTTGCCCGAGGATTACCCCA
AGCCGCCAGCAAAGTACGGTTCCCGCTTCCACTGGCTGGAGTAGAAGCTT
TCTAGACCAT
BS18015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFA8-RD | 528 | CG3683-PD | 1..528 | 17..544 | 2640 | 100 | Plus |
NDUFA8-RC | 528 | CG3683-PC | 1..528 | 17..544 | 2640 | 100 | Plus |
NDUFA8-RB | 528 | CG3683-PB | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFA8-RD | 666 | CG3683-RD | 68..596 | 17..545 | 2645 | 100 | Plus |
NDUFA8-RC | 683 | CG3683-RC | 85..613 | 17..545 | 2645 | 100 | Plus |
NDUFA8-RB | 668 | CG3683-RB | 70..598 | 17..545 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24664854..24665029 | 146..321 | 880 | 100 | Plus |
2R | 25286936 | 2R | 24665235..24665369 | 411..545 | 675 | 100 | Plus |
2R | 25286936 | 2R | 24664551..24664680 | 17..146 | 650 | 100 | Plus |
2R | 25286936 | 2R | 24665093..24665185 | 322..414 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:06:38 has no hits.
BS18015.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:25 Download gff for
BS18015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3683-RC | 1..528 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:07 Download gff for
BS18015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3683-RA | 76..603 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:29 Download gff for
BS18015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFA8-RB | 70..597 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:25 Download gff for
BS18015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3683-RA | 76..614 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:04 Download gff for
BS18015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFA8-RB | 70..597 | 17..544 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:04 Download gff for
BS18015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24664854..24665029 | 146..321 | 100 | -> | Plus |
2R | 24665093..24665183 | 322..412 | 100 | -> | Plus |
2R | 24665237..24665368 | 413..544 | 100 | | Plus |
2R | 24664551..24664679 | 17..145 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:29 Download gff for
BS18015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20552074..20552202 | 17..145 | 100 | -> | Plus |
arm_2R | 20552377..20552552 | 146..321 | 100 | -> | Plus |
arm_2R | 20552616..20552706 | 322..412 | 100 | -> | Plus |
arm_2R | 20552760..20552891 | 413..544 | 100 | | Plus |
BS18015.3prime Sequence
558 bp (558 high quality bases) assembled on 2007-06-06
> BS18015.3prime
ATGGTCTAGAAAGCTTCTACTCCAGCCAGTGGAAGCGGGAACCGTACTTT
GCTGGCGGCTTGGGGTAATCCTCGGGCAAACCGGGGGTGGCATCGGGATA
GGAGACCTTCTCCTCCTTCTTGGGTGCTTCCCGAGCTGATTGGATGACCT
TGGCCCTCGAGAAGTATCCATAGGAGGGACGATCCCAGTCGAAGTTATCT
TTGATACACTTGTCGAACACTCCCTGGGTCTTGCGGCAATGTGAAAAAGC
CATAGTACCGCTGCTCTTATCCAGGCAGGTGGCGTACTGCGTGAACTCCT
CATGGCAGGTCTTCTTCACCTTGCGGAAGAAGTCCAGGGCGCAGCTGGTC
ACGGCTTTGCCCTCCGCCAAACAGGCTCGCGGGTCATCCAGCTCCTGCCG
GCACAGCATAAACTCATTATTGGCCTGCTCGCATTGCTTGCCCAAATGGA
AGGCGCCTGCCCGTAAGGCCGCCGACGATAGATTTAGCTCCTGGACGTTC
AGCTCCGACTCCTCGGGCAGTGTTGTGTTGTTGGTGATGACCATGTCGAC
TGATAACT
BS18015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3683-PA | 528 | CG3683-RA | 1..528 | 544..17 | 2640 | 100 | Minus |
CG3683-PB | 528 | CG3683-RB | 1..528 | 544..17 | 2640 | 100 | Minus |
CG3683-PC | 528 | CG3683-RC | 1..528 | 544..17 | 2640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFA8-RD | 666 | CG3683-RD | 68..596 | 544..16 | 2645 | 100 | Minus |
NDUFA8-RC | 683 | CG3683-RC | 85..613 | 544..16 | 2645 | 100 | Minus |
NDUFA8-RB | 668 | CG3683-RB | 70..598 | 544..16 | 2645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:16:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24664854..24665029 | 415..240 | 880 | 100 | Minus |
2R | 25286936 | 2R | 24665235..24665369 | 150..16 | 675 | 100 | Minus |
2R | 25286936 | 2R | 24664551..24664680 | 544..415 | 650 | 100 | Minus |
2R | 25286936 | 2R | 24665093..24665185 | 239..147 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:16:04 has no hits.
BS18015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:02 Download gff for
BS18015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3683-PC | 1..528 | 17..544 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:46 Download gff for
BS18015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFA8-RB | 70..608 | 6..544 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:30 Download gff for
BS18015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFA8-RB | 70..608 | 6..544 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:30 Download gff for
BS18015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24664551..24664679 | 416..544 | 100 | -> | Minus |
2R | 24664854..24665029 | 240..415 | 100 | -> | Minus |
2R | 24665093..24665183 | 149..239 | 100 | -> | Minus |
2R | 24665237..24665379 | 6..148 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:46 Download gff for
BS18015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20552074..20552202 | 416..544 | 100 | -> | Minus |
arm_2R | 20552377..20552552 | 240..415 | 100 | -> | Minus |
arm_2R | 20552616..20552706 | 149..239 | 100 | -> | Minus |
arm_2R | 20552760..20552902 | 6..148 | 97 | | Minus |
BS18015.5prime Sequence
558 bp (558 high quality bases) assembled on 2007-06-06
> BS18015.5prime
GAAGTTATCAGTCGACATGGTCATCACCAACAACACAACACTGCCCGAGG
AGTCGGAGCTGAACGTCCAGGAGCTAAATCTATCGTCGGCGGCCTTACGG
GCAGGCGCCTTCCATTTGGGCAAGCAATGCGAGCAGGCCAATAATGAGTT
TATGCTGTGCCGGCAGGAGCTGGATGACCCGCGAGCCTGTTTGGCGGAGG
GCAAAGCCGTGACCAGCTGCGCCCTGGACTTCTTCCGCAAGGTGAAGAAG
ACCTGCCATGAGGAGTTCACGCAGTACGCCACCTGCCTGGATAAGAGCAG
CGGTACTATGGCTTTTTCACATTGCCGCAAGACCCAGGGAGTGTTCGACA
AGTGTATCAAAGATAACTTCGACTGGGATCGTCCCTCCTATGGATACTTC
TCGAGGGCCAAGGTCATCCAATCAGCTCGGGAAGCACCCAAGAAGGAGGA
GAAGGTCTCCTATCCCGATGCCACCCCCGGTTTGCCCGAGGATTACCCCA
AGCCGCCAGCAAAGTACGGTTCCCGCTTCCACTGGCTGGAGTAGAAGCTT
TCTAGACC
BS18015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3683-PA | 528 | CG3683-RA | 1..528 | 17..544 | 2640 | 100 | Plus |
CG3683-PB | 528 | CG3683-RB | 1..528 | 17..544 | 2640 | 100 | Plus |
CG3683-PC | 528 | CG3683-RC | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFA8-RD | 666 | CG3683-RD | 68..596 | 17..545 | 2645 | 100 | Plus |
NDUFA8-RC | 683 | CG3683-RC | 85..613 | 17..545 | 2645 | 100 | Plus |
NDUFA8-RB | 668 | CG3683-RB | 70..598 | 17..545 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24664854..24665029 | 146..321 | 880 | 100 | Plus |
2R | 25286936 | 2R | 24665235..24665369 | 411..545 | 675 | 100 | Plus |
2R | 25286936 | 2R | 24664551..24664680 | 17..146 | 650 | 100 | Plus |
2R | 25286936 | 2R | 24665093..24665185 | 322..414 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:50:12 has no hits.
BS18015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:07 Download gff for
BS18015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3683-PC | 1..528 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:22:12 Download gff for
BS18015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFA8-RB | 70..608 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:23 Download gff for
BS18015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFA8-RB | 70..608 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:23 Download gff for
BS18015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24664551..24664679 | 17..145 | 100 | -> | Plus |
2R | 24664854..24665029 | 146..321 | 100 | -> | Plus |
2R | 24665093..24665183 | 322..412 | 100 | -> | Plus |
2R | 24665237..24665379 | 413..555 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:22:12 Download gff for
BS18015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20552074..20552202 | 17..145 | 100 | -> | Plus |
arm_2R | 20552377..20552552 | 146..321 | 100 | -> | Plus |
arm_2R | 20552616..20552706 | 322..412 | 100 | -> | Plus |
arm_2R | 20552760..20552902 | 413..555 | 97 | | Plus |
BS18015.pep Sequence
Translation from 16 to 543
> BS18015.pep
MVITNNTTLPEESELNVQELNLSSAALRAGAFHLGKQCEQANNEFMLCRQ
ELDDPRACLAEGKAVTSCALDFFRKVKKTCHEEFTQYATCLDKSSGTMAF
SHCRKTQGVFDKCIKDNFDWDRPSYGYFSRAKVIQSAREAPKKEEKVSYP
DATPGLPEDYPKPPAKYGSRFHWLE*
BS18015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFA8-PD | 175 | CG3683-PD | 1..175 | 1..175 | 947 | 100 | Plus |
NDUFA8-PC | 175 | CG3683-PC | 1..175 | 1..175 | 947 | 100 | Plus |
NDUFA8-PB | 175 | CG3683-PB | 1..175 | 1..175 | 947 | 100 | Plus |
NDUFA8-PA | 175 | CG3683-PA | 1..175 | 1..175 | 947 | 100 | Plus |