Clone Sequence Records
BS18016.complete Sequence
713 bp assembled on 2010-02-09
GenBank Submission: KX802228
> BS18016.complete
GAAGTTATCAGTCGACATGAAGGATAAGATGAGCCTGAACCGGAGCCGGG
ACAGAGACATCACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGC
CCCAATCACAATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAA
CGAGTACCATCAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTC
CCAACGGCAACTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATA
GCTGGGACCATGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCAC
CAAGTACTCCAAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGC
AGACGCATCACGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAA
ACAGTGTCCATACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGA
CATGATCAGCGATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTG
GCGTTGAGCTCGATGAGCAGGCCGTCATGCTAGACGACTTTGGGAACGAG
TTCGATACCACGGAGTCCAAGTTGGATACGACCATGAAGAAAGTTGCCAA
AGTCTTGCACATGAATAATGATAAACGACAGTGGGCCGCCATTCTCATCC
TATCCGGACTGTTATTGTTTGTGATAATTTTGTTTATTATTTTGTAAAAG
CTTTCTAGACCAT
BS18016.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-RD | 972 | CG7736-PD | 292..972 | 17..697 | 3405 | 100 | Plus |
Syx6-RB | 681 | CG7736-PB | 1..681 | 17..697 | 3405 | 100 | Plus |
Syx6-RE | 1020 | CG7736-PE | 340..1020 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-RD | 1982 | CG7736-RD | 682..1370 | 17..705 | 3415 | 99.7 | Plus |
Syx6-RB | 1361 | CG7736-RB | 431..1119 | 17..705 | 3415 | 99.7 | Plus |
Syx6-RE | 1945 | CG7736-RE | 787..1475 | 17..705 | 3415 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11221026..11221629 | 17..620 | 3020 | 100 | Plus |
2R | 25286936 | 2R | 11221783..11221868 | 620..705 | 400 | 97.7 | Plus |
Blast to na_te.dros performed 2014-11-28 03:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1633..1681 | 705..657 | 109 | 74 | Minus |
BS18016.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:58 Download gff for
BS18016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RD | 287..972 | 10..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:33 Download gff for
BS18016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RD | 680..1358 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:15 Download gff for
BS18016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 787..1465 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:59 Download gff for
BS18016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RD | 675..1368 | 10..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:50 Download gff for
BS18016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 787..1465 | 17..695 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:50 Download gff for
BS18016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11221026..11221629 | 17..620 | 100 | -> | Plus |
2R | 11221784..11221858 | 621..695 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:15 Download gff for
BS18016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7108531..7109134 | 17..620 | 100 | -> | Plus |
arm_2R | 7109289..7109363 | 621..695 | 100 | | Plus |
BS18016.3prime Sequence
711 bp (711 high quality bases) assembled on 2007-06-06
> BS18016.3prime
ATGGTCTAGAAAGCTTTTACAAAATAATAAACAAAATTATCACAAACAAT
AACAGTCCGGATAGGATGAGAATGGCGGCCCACTGTCGTTTATCATTATT
CATGTGCAAGACTTTGGCAACTTTCTTCATGGTCGTATCCAACTTGGACT
CCGTGGTATCGAACTCGTTCCCAAAGTCGTCTAGCATGACGGCCTGCTCA
TCGAGCTCAACGCCAATTTGCCGCGAGACCGTCTTGAGGGTACCAATCGA
ATCGCTGATCATGTCTAGCTGCTCATCCTGTCCCTGGATCATACGCTGCT
GTATGGACACTGTTTCGCCCACGTACCTATGACTCGGACTGTCCATGCCG
CCGTGATGCGTCTGCCCATAGTGACTGGGACTGTCCAGGGCGTTCTCCAG
CTTGGAGTACTTGGTGCCGCTGTGGCGGGATGCTGCTGCCGCTGCCGCCG
ACATGGTCCCAGCTATGGTATTGGCCACCTGACTGCCGCTATTGATCAGC
GAGTTGCCGTTGGGACACTCCACGAGGTACGTGCGATCGTTGTGTGGATG
CTGATGGTACTCGTTGGAGTTGGAATTCGAATTGGGTATGGCAATGGAAT
GATTGTGATTGGGGCTGTGGCGATCGTTGTCGAGCAGCGGCTGGTGTGCG
GTGATGTCTCTGTCCCGGCTCCGGTTCAGGCTCATCTTATCCTTCATGTC
GACTGATAACT
BS18016.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7736-PE | 1020 | Syx6-RE | 340..1020 | 697..17 | 3405 | 100 | Minus |
CG7736-PB | 681 | Syx6-RB | 1..681 | 697..17 | 3405 | 100 | Minus |
CG7736-PD | 972 | Syx6-RD | 292..972 | 697..17 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-RD | 1982 | CG7736-RD | 682..1370 | 697..9 | 3415 | 99.7 | Minus |
Syx6-RB | 1361 | CG7736-RB | 431..1119 | 697..9 | 3415 | 99.7 | Minus |
Syx6-RE | 1945 | CG7736-RE | 787..1475 | 697..9 | 3415 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11221026..11221629 | 697..94 | 3020 | 100 | Minus |
2R | 25286936 | 2R | 11221783..11221868 | 94..9 | 400 | 97.7 | Minus |
Blast to na_te.dros performed 2015-02-12 16:38:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1633..1681 | 9..57 | 109 | 74 | Plus |
BS18016.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:11 Download gff for
BS18016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7736-PD | 287..972 | 17..704 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:42 Download gff for
BS18016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 782..1475 | 9..704 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:02 Download gff for
BS18016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 782..1475 | 9..704 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:02 Download gff for
BS18016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11221021..11221629 | 94..704 | 99 | -> | Minus |
2R | 11221784..11221868 | 9..93 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:42 Download gff for
BS18016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7108526..7109134 | 94..704 | 99 | -> | Minus |
arm_2R | 7109289..7109373 | 9..93 | 97 | | Minus |
BS18016.5prime Sequence
711 bp (711 high quality bases) assembled on 2007-06-06
> BS18016.5prime
GAAGTTATCAGTCGACATGAAGGATAAGATGAGCCTGAACCGGAGCCGGG
ACAGAGACATCACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGC
CCCAATCACAATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAA
CGAGTACCATCAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTC
CCAACGGCAACTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATA
GCTGGGACCATGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCAC
CAAGTACTCCAAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGC
AGACGCATCACGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAA
ACAGTGTCCATACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGA
CATGATCAGCGATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTG
GCGTTGAGCTCGATGAGCAGGCCGTCATGCTAGACGACTTTGGGAACGAG
TTCGATACCACGGAGTCCAAGTTGGATACGACCATGAAGAAAGTTGCCAA
AGTCTTGCACATGAATAATGATAAACGACAGTGGGCCGCCATTCTCATCC
TATCCGGACTGTTATTGTTTGTGATAATTTTGTTTATTATTTTGTAAAAG
CTTTCTAGACC
BS18016.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7736-PE | 1020 | Syx6-RE | 340..1020 | 17..697 | 3405 | 100 | Plus |
CG7736-PB | 681 | Syx6-RB | 1..681 | 17..697 | 3405 | 100 | Plus |
CG7736-PD | 972 | Syx6-RD | 292..972 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-RD | 1982 | CG7736-RD | 682..1370 | 17..705 | 3415 | 99.7 | Plus |
Syx6-RB | 1361 | CG7736-RB | 431..1119 | 17..705 | 3415 | 99.7 | Plus |
Syx6-RE | 1945 | CG7736-RE | 787..1475 | 17..705 | 3415 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11221026..11221629 | 17..620 | 3020 | 100 | Plus |
2R | 25286936 | 2R | 11221783..11221868 | 620..705 | 400 | 97.7 | Plus |
Blast to na_te.dros performed 2015-02-10 16:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1633..1681 | 705..657 | 109 | 74 | Minus |
BS18016.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:16 Download gff for
BS18016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7736-PD | 287..972 | 10..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:52 Download gff for
BS18016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 782..1475 | 10..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:10 Download gff for
BS18016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 782..1475 | 10..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:10 Download gff for
BS18016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11221021..11221629 | 10..620 | 99 | -> | Plus |
2R | 11221784..11221868 | 621..705 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:52 Download gff for
BS18016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7108526..7109134 | 10..620 | 99 | -> | Plus |
arm_2R | 7109289..7109373 | 621..705 | 97 | | Plus |
BS18016.pep Sequence
Translation from 16 to 696
> BS18016.pep
MKDKMSLNRSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQH
PHNDRTYLVECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKL
ENALDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDS
IGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMN
NDKRQWAAILILSGLLLFVIILFIIL*
BS18016.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-PB | 226 | CG7736-PB | 1..226 | 1..226 | 1169 | 100 | Plus |
Syx6-PD | 323 | CG7736-PD | 98..323 | 1..226 | 1169 | 100 | Plus |
Syx6-PE | 339 | CG7736-PE | 114..339 | 1..226 | 1169 | 100 | Plus |