Clone BS18016 Report

Search the DGRC for BS18016

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptSyx6-RB
Protein status:BS18016.pep: full length peptide match
Sequenced Size:713

Clone Sequence Records

BS18016.complete Sequence

713 bp assembled on 2010-02-09

GenBank Submission: KX802228

> BS18016.complete
GAAGTTATCAGTCGACATGAAGGATAAGATGAGCCTGAACCGGAGCCGGG
ACAGAGACATCACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGC
CCCAATCACAATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAA
CGAGTACCATCAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTC
CCAACGGCAACTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATA
GCTGGGACCATGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCAC
CAAGTACTCCAAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGC
AGACGCATCACGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAA
ACAGTGTCCATACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGA
CATGATCAGCGATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTG
GCGTTGAGCTCGATGAGCAGGCCGTCATGCTAGACGACTTTGGGAACGAG
TTCGATACCACGGAGTCCAAGTTGGATACGACCATGAAGAAAGTTGCCAA
AGTCTTGCACATGAATAATGATAAACGACAGTGGGCCGCCATTCTCATCC
TATCCGGACTGTTATTGTTTGTGATAATTTTGTTTATTATTTTGTAAAAG
CTTTCTAGACCAT

BS18016.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 972 CG7736-PD 292..972 17..697 3405 100 Plus
Syx6-RB 681 CG7736-PB 1..681 17..697 3405 100 Plus
Syx6-RE 1020 CG7736-PE 340..1020 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 1982 CG7736-RD 682..1370 17..705 3415 99.7 Plus
Syx6-RB 1361 CG7736-RB 431..1119 17..705 3415 99.7 Plus
Syx6-RE 1945 CG7736-RE 787..1475 17..705 3415 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11221026..11221629 17..620 3020 100 Plus
2R 25286936 2R 11221783..11221868 620..705 400 97.7 Plus
Blast to na_te.dros performed 2014-11-28 03:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 1633..1681 705..657 109 74 Minus

BS18016.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:58 Download gff for BS18016.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 287..972 10..697 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:33 Download gff for BS18016.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 680..1358 17..695 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:15 Download gff for BS18016.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 787..1465 17..695 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:59 Download gff for BS18016.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 675..1368 10..705 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:50 Download gff for BS18016.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 787..1465 17..695 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:50 Download gff for BS18016.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11221026..11221629 17..620 100 -> Plus
2R 11221784..11221858 621..695 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:15 Download gff for BS18016.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7108531..7109134 17..620 100 -> Plus
arm_2R 7109289..7109363 621..695 100   Plus

BS18016.3prime Sequence

711 bp (711 high quality bases) assembled on 2007-06-06

> BS18016.3prime
ATGGTCTAGAAAGCTTTTACAAAATAATAAACAAAATTATCACAAACAAT
AACAGTCCGGATAGGATGAGAATGGCGGCCCACTGTCGTTTATCATTATT
CATGTGCAAGACTTTGGCAACTTTCTTCATGGTCGTATCCAACTTGGACT
CCGTGGTATCGAACTCGTTCCCAAAGTCGTCTAGCATGACGGCCTGCTCA
TCGAGCTCAACGCCAATTTGCCGCGAGACCGTCTTGAGGGTACCAATCGA
ATCGCTGATCATGTCTAGCTGCTCATCCTGTCCCTGGATCATACGCTGCT
GTATGGACACTGTTTCGCCCACGTACCTATGACTCGGACTGTCCATGCCG
CCGTGATGCGTCTGCCCATAGTGACTGGGACTGTCCAGGGCGTTCTCCAG
CTTGGAGTACTTGGTGCCGCTGTGGCGGGATGCTGCTGCCGCTGCCGCCG
ACATGGTCCCAGCTATGGTATTGGCCACCTGACTGCCGCTATTGATCAGC
GAGTTGCCGTTGGGACACTCCACGAGGTACGTGCGATCGTTGTGTGGATG
CTGATGGTACTCGTTGGAGTTGGAATTCGAATTGGGTATGGCAATGGAAT
GATTGTGATTGGGGCTGTGGCGATCGTTGTCGAGCAGCGGCTGGTGTGCG
GTGATGTCTCTGTCCCGGCTCCGGTTCAGGCTCATCTTATCCTTCATGTC
GACTGATAACT

BS18016.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7736-PE 1020 Syx6-RE 340..1020 697..17 3405 100 Minus
CG7736-PB 681 Syx6-RB 1..681 697..17 3405 100 Minus
CG7736-PD 972 Syx6-RD 292..972 697..17 3405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 1982 CG7736-RD 682..1370 697..9 3415 99.7 Minus
Syx6-RB 1361 CG7736-RB 431..1119 697..9 3415 99.7 Minus
Syx6-RE 1945 CG7736-RE 787..1475 697..9 3415 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11221026..11221629 697..94 3020 100 Minus
2R 25286936 2R 11221783..11221868 94..9 400 97.7 Minus
Blast to na_te.dros performed 2015-02-12 16:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 1633..1681 9..57 109 74 Plus

BS18016.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:11 Download gff for BS18016.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7736-PD 287..972 17..704 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:42 Download gff for BS18016.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 782..1475 9..704 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:02 Download gff for BS18016.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 782..1475 9..704 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:02 Download gff for BS18016.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11221021..11221629 94..704 99 -> Minus
2R 11221784..11221868 9..93 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:42 Download gff for BS18016.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7108526..7109134 94..704 99 -> Minus
arm_2R 7109289..7109373 9..93 97   Minus

BS18016.5prime Sequence

711 bp (711 high quality bases) assembled on 2007-06-06

> BS18016.5prime
GAAGTTATCAGTCGACATGAAGGATAAGATGAGCCTGAACCGGAGCCGGG
ACAGAGACATCACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGC
CCCAATCACAATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAA
CGAGTACCATCAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTC
CCAACGGCAACTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATA
GCTGGGACCATGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCAC
CAAGTACTCCAAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGC
AGACGCATCACGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAA
ACAGTGTCCATACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGA
CATGATCAGCGATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTG
GCGTTGAGCTCGATGAGCAGGCCGTCATGCTAGACGACTTTGGGAACGAG
TTCGATACCACGGAGTCCAAGTTGGATACGACCATGAAGAAAGTTGCCAA
AGTCTTGCACATGAATAATGATAAACGACAGTGGGCCGCCATTCTCATCC
TATCCGGACTGTTATTGTTTGTGATAATTTTGTTTATTATTTTGTAAAAG
CTTTCTAGACC

BS18016.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7736-PE 1020 Syx6-RE 340..1020 17..697 3405 100 Plus
CG7736-PB 681 Syx6-RB 1..681 17..697 3405 100 Plus
CG7736-PD 972 Syx6-RD 292..972 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 1982 CG7736-RD 682..1370 17..705 3415 99.7 Plus
Syx6-RB 1361 CG7736-RB 431..1119 17..705 3415 99.7 Plus
Syx6-RE 1945 CG7736-RE 787..1475 17..705 3415 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11221026..11221629 17..620 3020 100 Plus
2R 25286936 2R 11221783..11221868 620..705 400 97.7 Plus
Blast to na_te.dros performed 2015-02-10 16:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 1633..1681 705..657 109 74 Minus

BS18016.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:16 Download gff for BS18016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7736-PD 287..972 10..697 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:52 Download gff for BS18016.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 782..1475 10..705 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:10 Download gff for BS18016.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 782..1475 10..705 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:10 Download gff for BS18016.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11221021..11221629 10..620 99 -> Plus
2R 11221784..11221868 621..705 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:52 Download gff for BS18016.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7108526..7109134 10..620 99 -> Plus
arm_2R 7109289..7109373 621..705 97   Plus

BS18016.pep Sequence

Translation from 16 to 696

> BS18016.pep
MKDKMSLNRSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQH
PHNDRTYLVECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKL
ENALDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDS
IGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMN
NDKRQWAAILILSGLLLFVIILFIIL*

BS18016.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-PB 226 CG7736-PB 1..226 1..226 1169 100 Plus
Syx6-PD 323 CG7736-PD 98..323 1..226 1169 100 Plus
Syx6-PE 339 CG7736-PE 114..339 1..226 1169 100 Plus