Clone BS18023 Report

Search the DGRC for BS18023

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptcmpy-RB
Protein status:BS18023.pep: full length peptide match
Sequenced Size:383

Clone Sequence Records

BS18023.complete Sequence

383 bp assembled on 2010-02-09

GenBank Submission: KX801556

> BS18023.complete
GAAGTTATCAGTCGACATGGGCGGAAGTGCCAGAGGCGTGGGGCGGAGGG
GCGTGGTCCTGGAGCAGGATGTACGCACAAGGTCGTCGCAGGGGGAGCGA
AAGAGGGGGCTCGCTGGCAAACAGCAGCACAACAATGCCAAGCTTCCGCT
TAGGATGCGCTCGAACGGAAGTTATTTTGGCCGCCTGAACGTGAGCGCGC
TGCTCATCTACTTGTGGTGCTATCTGCTACTGGTTATGGCAGCATCTGGC
GGCAGCAACCACGTGGTAAATGGCCTCAAATGCTATTGCAATCCGAAGGA
GTGCGACGTGATCCGCTCACCCGACTGCCCCGGAAAAGGACTTATGCTGT
GGGATCCATGCAAGTAAAAGCTTTCTAGACCAT

BS18023.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
cmpy-RB 351 CG13253-PB 1..351 17..367 1755 100 Plus
cmpy-RD 822 CG13253-PD 1..347 17..363 1735 100 Plus
cmpy-RC 822 CG13253-PC 1..347 17..363 1735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
cmpy-RB 2737 CG13253-RB 357..707 17..367 1755 100 Plus
cmpy-RD 1638 CG13253-RD 373..719 17..363 1735 100 Plus
cmpy-RC 1622 CG13253-RC 357..703 17..363 1735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20716795..20717145 367..17 1755 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:42:02 has no hits.

BS18023.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:36 Download gff for BS18023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13253-RB 1..351 17..367 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:07 Download gff for BS18023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13253-RB 355..703 17..365 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:28 Download gff for BS18023.complete
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 357..705 17..365 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:37 Download gff for BS18023.complete
Subject Subject Range Query Range Percent Splice Strand
CG13253-RB 355..705 17..367 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:01 Download gff for BS18023.complete
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 357..705 17..365 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:01 Download gff for BS18023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20716797..20717145 17..365 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:28 Download gff for BS18023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20709897..20710245 17..365 100   Minus

BS18023.3prime Sequence

381 bp (381 high quality bases) assembled on 2007-06-06

> BS18023.3prime
ATGGTCTAGAAAGCTTTTACTTGCATGGATCCCACAGCATAAGTCCTTTT
CCGGGGCAGTCGGGTGAGCGGATCACGTCGCACTCCTTCGGATTGCAATA
GCATTTGAGGCCATTTACCACGTGGTTGCTGCCGCCAGATGCTGCCATAA
CCAGTAGCAGATAGCACCACAAGTAGATGAGCAGCGCGCTCACGTTCAGG
CGGCCAAAATAACTTCCGTTCGAGCGCATCCTAAGCGGAAGCTTGGCATT
GTTGTGCTGCTGTTTGCCAGCGAGCCCCCTCTTTCGCTCCCCCTGCGACG
ACCTTGTGCGTACATCCTGCTCCAGGACCACGCCCCTCCGCCCCACGCCT
CTGGCACTTCCGCCCATGTCGACTGATAACT

BS18023.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13253-PA 351 CG13253-RA 1..351 367..17 1755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
cmpy-RB 2737 CG13253-RB 357..707 367..17 1755 100 Minus
cmpy-RD 1638 CG13253-RD 373..719 367..21 1735 100 Minus
cmpy-RC 1622 CG13253-RC 357..703 367..21 1735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20716795..20717145 17..367 1755 100 Plus
Blast to na_te.dros performed on 2015-02-05 14:03:37 has no hits.

BS18023.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:55 Download gff for BS18023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13253-PA 1..351 17..367 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:27 Download gff for BS18023.3prime
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 357..707 17..367 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:16:45 Download gff for BS18023.3prime
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 357..707 17..367 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:16:45 Download gff for BS18023.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20716795..20717145 17..367 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:27 Download gff for BS18023.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20709895..20710245 17..367 100   Plus

BS18023.5prime Sequence

381 bp (381 high quality bases) assembled on 2007-06-06

> BS18023.5prime
GAAGTTATCAGTCGACATGGGCGGAAGTGCCAGAGGCGTGGGGCGGAGGG
GCGTGGTCCTGGAGCAGGATGTACGCACAAGGTCGTCGCAGGGGGAGCGA
AAGAGGGGGCTCGCTGGCAAACAGCAGCACAACAATGCCAAGCTTCCGCT
TAGGATGCGCTCGAACGGAAGTTATTTTGGCCGCCTGAACGTGAGCGCGC
TGCTCATCTACTTGTGGTGCTATCTGCTACTGGTTATGGCAGCATCTGGC
GGCAGCAACCACGTGGTAAATGGCCTCAAATGCTATTGCAATCCGAAGGA
GTGCGACGTGATCCGCTCACCCGACTGCCCCGGAAAAGGACTTATGCTGT
GGGATCCATGCAAGTAAAAGCTTTCTAGACC

BS18023.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13253-PA 351 CG13253-RA 1..351 17..367 1755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
cmpy-RB 2737 CG13253-RB 357..707 17..367 1755 100 Plus
cmpy-RD 1638 CG13253-RD 373..719 17..363 1735 100 Plus
cmpy-RC 1622 CG13253-RC 357..703 17..363 1735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20716795..20717145 367..17 1755 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:53:33 has no hits.

BS18023.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:00 Download gff for BS18023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13253-PA 1..351 17..367 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:56 Download gff for BS18023.5prime
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 357..707 17..367 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:21 Download gff for BS18023.5prime
Subject Subject Range Query Range Percent Splice Strand
cmpy-RB 357..707 17..367 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:47:21 Download gff for BS18023.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20716795..20717145 17..367 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:56 Download gff for BS18023.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20709895..20710245 17..367 100   Minus

BS18023.pep Sequence

Translation from 16 to 366

> BS18023.pep
MGGSARGVGRRGVVLEQDVRTRSSQGERKRGLAGKQQHNNAKLPLRMRSN
GSYFGRLNVSALLIYLWCYLLLVMAASGGSNHVVNGLKCYCNPKECDVIR
SPDCPGKGLMLWDPCK*

BS18023.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
cmpy-PB 116 CG13253-PB 1..116 1..116 627 100 Plus
cmpy-PD 273 CG13253-PD 1..116 1..116 627 100 Plus
cmpy-PC 273 CG13253-PC 1..116 1..116 627 100 Plus