Clone Sequence Records
BS18023.complete Sequence
383 bp assembled on 2010-02-09
GenBank Submission: KX801556
> BS18023.complete
GAAGTTATCAGTCGACATGGGCGGAAGTGCCAGAGGCGTGGGGCGGAGGG
GCGTGGTCCTGGAGCAGGATGTACGCACAAGGTCGTCGCAGGGGGAGCGA
AAGAGGGGGCTCGCTGGCAAACAGCAGCACAACAATGCCAAGCTTCCGCT
TAGGATGCGCTCGAACGGAAGTTATTTTGGCCGCCTGAACGTGAGCGCGC
TGCTCATCTACTTGTGGTGCTATCTGCTACTGGTTATGGCAGCATCTGGC
GGCAGCAACCACGTGGTAAATGGCCTCAAATGCTATTGCAATCCGAAGGA
GTGCGACGTGATCCGCTCACCCGACTGCCCCGGAAAAGGACTTATGCTGT
GGGATCCATGCAAGTAAAAGCTTTCTAGACCAT
BS18023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-RB | 351 | CG13253-PB | 1..351 | 17..367 | 1755 | 100 | Plus |
cmpy-RD | 822 | CG13253-PD | 1..347 | 17..363 | 1735 | 100 | Plus |
cmpy-RC | 822 | CG13253-PC | 1..347 | 17..363 | 1735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-RB | 2737 | CG13253-RB | 357..707 | 17..367 | 1755 | 100 | Plus |
cmpy-RD | 1638 | CG13253-RD | 373..719 | 17..363 | 1735 | 100 | Plus |
cmpy-RC | 1622 | CG13253-RC | 357..703 | 17..363 | 1735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20716795..20717145 | 367..17 | 1755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:42:02 has no hits.
BS18023.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:36 Download gff for
BS18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-RB | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:13:07 Download gff for
BS18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-RB | 355..703 | 17..365 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:03:28 Download gff for
BS18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 357..705 | 17..365 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:37 Download gff for
BS18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-RB | 355..705 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:01 Download gff for
BS18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 357..705 | 17..365 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:01 Download gff for
BS18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20716797..20717145 | 17..365 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:03:28 Download gff for
BS18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20709897..20710245 | 17..365 | 100 | | Minus |
BS18023.3prime Sequence
381 bp (381 high quality bases) assembled on 2007-06-06
> BS18023.3prime
ATGGTCTAGAAAGCTTTTACTTGCATGGATCCCACAGCATAAGTCCTTTT
CCGGGGCAGTCGGGTGAGCGGATCACGTCGCACTCCTTCGGATTGCAATA
GCATTTGAGGCCATTTACCACGTGGTTGCTGCCGCCAGATGCTGCCATAA
CCAGTAGCAGATAGCACCACAAGTAGATGAGCAGCGCGCTCACGTTCAGG
CGGCCAAAATAACTTCCGTTCGAGCGCATCCTAAGCGGAAGCTTGGCATT
GTTGTGCTGCTGTTTGCCAGCGAGCCCCCTCTTTCGCTCCCCCTGCGACG
ACCTTGTGCGTACATCCTGCTCCAGGACCACGCCCCTCCGCCCCACGCCT
CTGGCACTTCCGCCCATGTCGACTGATAACT
BS18023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13253-PA | 351 | CG13253-RA | 1..351 | 367..17 | 1755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-RB | 2737 | CG13253-RB | 357..707 | 367..17 | 1755 | 100 | Minus |
cmpy-RD | 1638 | CG13253-RD | 373..719 | 367..21 | 1735 | 100 | Minus |
cmpy-RC | 1622 | CG13253-RC | 357..703 | 367..21 | 1735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20716795..20717145 | 17..367 | 1755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 14:03:37 has no hits.
BS18023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:55 Download gff for
BS18023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-PA | 1..351 | 17..367 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:27 Download gff for
BS18023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 357..707 | 17..367 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:16:45 Download gff for
BS18023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 357..707 | 17..367 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:16:45 Download gff for
BS18023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20716795..20717145 | 17..367 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:27 Download gff for
BS18023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20709895..20710245 | 17..367 | 100 | | Plus |
BS18023.5prime Sequence
381 bp (381 high quality bases) assembled on 2007-06-06
> BS18023.5prime
GAAGTTATCAGTCGACATGGGCGGAAGTGCCAGAGGCGTGGGGCGGAGGG
GCGTGGTCCTGGAGCAGGATGTACGCACAAGGTCGTCGCAGGGGGAGCGA
AAGAGGGGGCTCGCTGGCAAACAGCAGCACAACAATGCCAAGCTTCCGCT
TAGGATGCGCTCGAACGGAAGTTATTTTGGCCGCCTGAACGTGAGCGCGC
TGCTCATCTACTTGTGGTGCTATCTGCTACTGGTTATGGCAGCATCTGGC
GGCAGCAACCACGTGGTAAATGGCCTCAAATGCTATTGCAATCCGAAGGA
GTGCGACGTGATCCGCTCACCCGACTGCCCCGGAAAAGGACTTATGCTGT
GGGATCCATGCAAGTAAAAGCTTTCTAGACC
BS18023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 11:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13253-PA | 351 | CG13253-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-RB | 2737 | CG13253-RB | 357..707 | 17..367 | 1755 | 100 | Plus |
cmpy-RD | 1638 | CG13253-RD | 373..719 | 17..363 | 1735 | 100 | Plus |
cmpy-RC | 1622 | CG13253-RC | 357..703 | 17..363 | 1735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20716795..20717145 | 367..17 | 1755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:53:33 has no hits.
BS18023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:00 Download gff for
BS18023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13253-PA | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:02:56 Download gff for
BS18023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 357..707 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:21 Download gff for
BS18023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cmpy-RB | 357..707 | 17..367 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:47:21 Download gff for
BS18023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20716795..20717145 | 17..367 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:02:56 Download gff for
BS18023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20709895..20710245 | 17..367 | 100 | | Minus |
BS18023.pep Sequence
Translation from 16 to 366
> BS18023.pep
MGGSARGVGRRGVVLEQDVRTRSSQGERKRGLAGKQQHNNAKLPLRMRSN
GSYFGRLNVSALLIYLWCYLLLVMAASGGSNHVVNGLKCYCNPKECDVIR
SPDCPGKGLMLWDPCK*
BS18023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cmpy-PB | 116 | CG13253-PB | 1..116 | 1..116 | 627 | 100 | Plus |
cmpy-PD | 273 | CG13253-PD | 1..116 | 1..116 | 627 | 100 | Plus |
cmpy-PC | 273 | CG13253-PC | 1..116 | 1..116 | 627 | 100 | Plus |