Clone BS18026 Report

Search the DGRC for BS18026

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG1882-RA
Protein status:BS18026.pep: full length peptide match
Sequenced Size:1397

Clone Sequence Records

BS18026.complete Sequence

1397 bp assembled on 2009-12-07

GenBank Submission: KX802535

> BS18026.complete
GAAGTTATCAGTCGACATGAGCGAACCGCTAGCATTGGCGAGCGGCGGCG
TGGTGGATCCAACGGCCGCATCCACCAGCGTCACTATTTCGAACCTGCCA
CAGCCAACAGTTGCGCTGGGATCGGAATCTAAATCGTCCATGGACCTAGA
GGATCCCCGGAACAATAGATTCTTTCTCTGGAAATGGTTGTGTAACTGGA
CATCCAGCTCACCAACTATGCTGCGTGCCGTGGAGAAGAAGATACTGTCG
TACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGT
GGGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGG
AGGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGG
GTGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGA
CATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGC
TGGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAG
ATGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCAT
TGCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATAC
TAGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGC
AAAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCT
AAATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGG
TGCAAAAGACGCGGCCAGACATTATGCGAAAGTTCCAGAGCACCATCGAG
GAGGATATCAACTTGCTGCCGCAGTACATACACCAGTGCAATGCGCAGAA
TCCCAGCGGTGAGTCCGCCTTCCACACAATGATGCAATCCTTTGGATGGG
CCAAGCACCCCATGATTCACCGCATCAAGGACGTGCGCAGCGACATACCA
ATCACGTTCATCTACGGCTCCCGTTCGTGGATCGACTCGTCGTCGGGGGA
GAAGATCAAGTCGCAGCGCGGCAGCAATATGGTGGACATCAAGATCGTGA
CGGGCGCCGGCCACCACGTATATGCCGACAAGCCGGACGTGTTCAACCGC
TACGTGAACGAGACCTGTGATATGTACAAGGTGGCCGGTGGCAAGCTGAT
AACGCCCCTGCAGCTAATCCGCGAATCCACCGAGTCCGACGAGGAGCGCG
AGCCCAGCCTGAGCACAGCGAAGACGGTCGAGGTCCAGCCAGAAGTCCAG
CCGGTGCCCCAACCTGTCACCGCAGCCGACACATCCACGCCGACCGCCGA
CGAACTGGCGGCGAACATCAAACCGAAGTGAAAGCTTTCTAGACCAT

BS18026.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RG 1365 CG1882-PG 1..1365 17..1381 6825 100 Plus
CG1882-RF 1365 CG1882-PF 1..1365 17..1381 6825 100 Plus
CG1882-RA 1365 CG1882-PA 1..1365 17..1381 6825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RG 2695 CG1882-RG 351..1719 13..1381 6830 99.9 Plus
CG1882-RF 1756 CG1882-RF 153..1521 13..1381 6830 99.9 Plus
CG1882-RA 1954 CG1882-RA 351..1719 13..1381 6830 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7813279..7814510 150..1381 6160 100 Plus
2R 25286936 2R 7812854..7812993 13..152 685 99.3 Plus
Blast to na_te.dros performed on 2014-11-28 01:47:29 has no hits.

BS18026.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:26 Download gff for BS18026.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 1..1365 17..1381 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:38 Download gff for BS18026.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 353..1716 17..1380 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:50 Download gff for BS18026.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 355..1718 17..1380 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:26 Download gff for BS18026.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 347..1719 10..1385 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:50 Download gff for BS18026.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 355..1718 17..1380 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:50 Download gff for BS18026.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7812858..7812992 17..151 100 -> Plus
2R 7813281..7814509 152..1380 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:50 Download gff for BS18026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3700363..3700497 17..151 100 -> Plus
arm_2R 3700786..3702014 152..1380 100   Plus

BS18026.3prime Sequence

819 bp (800 high quality bases) assembled on 2007-06-06

> BS18026.3prime
ATGGTCTAGAAAGCTTTCACTTCGGTTTGATGTTCGCCGCCAGTTCGTCG
GCGGTCGGCGTGGATGTGTCGGCTGCGGTGACAGGTTGGGGCACCGGCTG
GACTTCTGGCTGGACCTCGACCGTCTTCGCTGTGCTCAGGCTGGGCTCGC
GCTCCTCGTCGGACTCGGTGGATTCGCGGATTAGCTGCAGGGGCGTTATC
AGCTTGCCACCGGCCACCTTGTACATATCACAGGTCTCGTTCACGTAGCG
GTTGAACACGTCCGGCTTGTCGGCATATACGTGGTGGCCGGCGCCCGTCA
CGATCTTGATGTCCACCATATTGCTGCCGCGCTGCGACTTGATCTTCTCC
CCCGACGACGAGTCGATCCACGAACGGGAGCCGTAGATGAACGTGATTGG
TATGTCGCTGCGCACGTCCTTGATGCGGTGAATCATGGGGTGCTTGGCCC
ATCCAAAGGATTGCATCATTGTGTGGAAGGCGGACTCACCGCTGGGATTC
TGCGCATTGCACTGGTGTATGTACTGCGGCAGCAAGTTGATATCCTCCTC
GATGGTGCTCTGGAACTTTCGCATAATGTCTGGCCGCGTCTTTTGCACCA
CCCACTGGCCAAAGGGTCCGGCGGCGCGGAGAGCCCACAACGGATTTAGC
GGGGTCAGTACTCTAGCTATGGCCCGCACCCAGAGCGGTATTGTTTTGCC
GTTGGTCGAATCCGAGGGCTTCTCGGGGAAGCCCCAGGGATCGGCTAGTA
TGAGGTGTTTCACACGCTCCGGATGTGAGAGGGCGTAGCTGGAGGCAATG
AAGCCGCCCATCGAGTGGC

BS18026.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-PA 1365 CG1882-RA 563..1365 819..17 4015 100 Minus
CG1882-PC 1164 CG1882-RC 362..1164 819..17 4015 100 Minus
CG1882-PD 1164 CG1882-RD 362..1164 819..17 4015 100 Minus
CG1882-PB 1164 CG1882-RB 362..1164 819..17 4015 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RG 2695 CG1882-RG 917..1719 819..17 4015 100 Minus
CG1882-RF 1756 CG1882-RF 719..1521 819..17 4015 100 Minus
CG1882-RE 1668 CG1882-RE 631..1433 819..17 4015 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7813708..7814510 819..17 4015 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:31:57 has no hits.

BS18026.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:24 Download gff for BS18026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-PB 362..1164 17..819 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:55 Download gff for BS18026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-RB 548..1352 13..819 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:11 Download gff for BS18026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-RE 631..1435 13..819 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:11 Download gff for BS18026.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7813708..7814512 13..819 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:55 Download gff for BS18026.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3701213..3702017 13..819 99   Minus

BS18026.5prime Sequence

835 bp (777 high quality bases) assembled on 2007-06-06

> BS18026.5prime
GAAGTTATCAGTCGACATGAGCGAACCGCTAGCATTGGCGAGCGGCGGCG
TGGTGGATCCAACGGCCGCATCCACCAGCGTCACTATTTCGAACCTGCCA
CAGCCAACAGTTGCGCTGGGATCGGAATCTAAATCGTCCATGGACCTAGA
GGATCCCCGGAACAATAGATTCTTTCTCTGGAAATGGTTGTGTAACTGGA
CATCCAGCTCACCAACTATGCTGCGTGCCGTGGAGAAGAAGATACTGTCG
TACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGT
GGGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGG
AGGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGG
GTGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGA
CATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGC
TGGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAG
ATGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCAT
TGCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATAC
TAGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGC
AAAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCT
AAATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGG
TGCAAAAGACGCGGCCAGACATTATGCGAAAGTTC

BS18026.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-PA 1365 CG1882-RA 1..819 17..835 4095 100 Plus
CG1882-PC 1164 CG1882-RC 1..618 218..835 3090 100 Plus
CG1882-PD 1164 CG1882-RD 1..618 218..835 3090 100 Plus
CG1882-PB 1164 CG1882-RB 1..618 218..835 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RG 2695 CG1882-RG 351..1173 13..835 4100 99.9 Plus
CG1882-RF 1756 CG1882-RF 153..975 13..835 4100 99.9 Plus
CG1882-RA 1954 CG1882-RA 351..1173 13..835 4100 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7813279..7813964 150..835 3430 100 Plus
2R 25286936 2R 7812854..7812993 13..152 685 99.3 Plus
Blast to na_te.dros performed on 2015-02-13 07:16:10 has no hits.

BS18026.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:30 Download gff for BS18026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:49 Download gff for BS18026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 349..1173 10..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:42 Download gff for BS18026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 349..1173 10..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:42 Download gff for BS18026.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7812852..7812992 10..151 98 -> Plus
2R 7813281..7813964 152..835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:49 Download gff for BS18026.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3700357..3700497 10..151 98 -> Plus
arm_2R 3700786..3701469 152..835 100   Plus

BS18026.pep Sequence

Translation from 16 to 1380

> BS18026.pep
MSEPLALASGGVVDPTAASTSVTISNLPQPTVALGSESKSSMDLEDPRNN
RFFLWKWLCNWTSSSPTMLRAVEKKILSYVKLPYRGFFVDIGPAVGEADK
IWTISMNTESKEVPLVLLHGLGAGIALWVMNLDAFAKGRPVYAMDILGFG
RSSRPLFAKDALVCEKQFVKSVEEWRREMNINDMILLGHSMGGFIASSYA
LSHPERVKHLILADPWGFPEKPSDSTNGKTIPLWVRAIARVLTPLNPLWA
LRAAGPFGQWVVQKTRPDIMRKFQSTIEEDINLLPQYIHQCNAQNPSGES
AFHTMMQSFGWAKHPMIHRIKDVRSDIPITFIYGSRSWIDSSSGEKIKSQ
RGSNMVDIKIVTGAGHHVYADKPDVFNRYVNETCDMYKVAGGKLITPLQL
IRESTESDEEREPSLSTAKTVEVQPEVQPVPQPVTAADTSTPTADELAAN
IKPK*

BS18026.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-PG 454 CG1882-PG 1..454 1..454 2383 100 Plus
CG1882-PF 454 CG1882-PF 1..454 1..454 2383 100 Plus
CG1882-PA 454 CG1882-PA 1..454 1..454 2383 100 Plus
CG1882-PE 387 CG1882-PE 1..387 68..454 2031 100 Plus
CG1882-PB 387 CG1882-PB 1..387 68..454 2031 100 Plus