Clone Sequence Records
BS18026.complete Sequence
1397 bp assembled on 2009-12-07
GenBank Submission: KX802535
> BS18026.complete
GAAGTTATCAGTCGACATGAGCGAACCGCTAGCATTGGCGAGCGGCGGCG
TGGTGGATCCAACGGCCGCATCCACCAGCGTCACTATTTCGAACCTGCCA
CAGCCAACAGTTGCGCTGGGATCGGAATCTAAATCGTCCATGGACCTAGA
GGATCCCCGGAACAATAGATTCTTTCTCTGGAAATGGTTGTGTAACTGGA
CATCCAGCTCACCAACTATGCTGCGTGCCGTGGAGAAGAAGATACTGTCG
TACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGT
GGGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGG
AGGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGG
GTGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGA
CATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGC
TGGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAG
ATGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCAT
TGCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATAC
TAGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGC
AAAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCT
AAATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGG
TGCAAAAGACGCGGCCAGACATTATGCGAAAGTTCCAGAGCACCATCGAG
GAGGATATCAACTTGCTGCCGCAGTACATACACCAGTGCAATGCGCAGAA
TCCCAGCGGTGAGTCCGCCTTCCACACAATGATGCAATCCTTTGGATGGG
CCAAGCACCCCATGATTCACCGCATCAAGGACGTGCGCAGCGACATACCA
ATCACGTTCATCTACGGCTCCCGTTCGTGGATCGACTCGTCGTCGGGGGA
GAAGATCAAGTCGCAGCGCGGCAGCAATATGGTGGACATCAAGATCGTGA
CGGGCGCCGGCCACCACGTATATGCCGACAAGCCGGACGTGTTCAACCGC
TACGTGAACGAGACCTGTGATATGTACAAGGTGGCCGGTGGCAAGCTGAT
AACGCCCCTGCAGCTAATCCGCGAATCCACCGAGTCCGACGAGGAGCGCG
AGCCCAGCCTGAGCACAGCGAAGACGGTCGAGGTCCAGCCAGAAGTCCAG
CCGGTGCCCCAACCTGTCACCGCAGCCGACACATCCACGCCGACCGCCGA
CGAACTGGCGGCGAACATCAAACCGAAGTGAAAGCTTTCTAGACCAT
BS18026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-RG | 1365 | CG1882-PG | 1..1365 | 17..1381 | 6825 | 100 | Plus |
CG1882-RF | 1365 | CG1882-PF | 1..1365 | 17..1381 | 6825 | 100 | Plus |
CG1882-RA | 1365 | CG1882-PA | 1..1365 | 17..1381 | 6825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-RG | 2695 | CG1882-RG | 351..1719 | 13..1381 | 6830 | 99.9 | Plus |
CG1882-RF | 1756 | CG1882-RF | 153..1521 | 13..1381 | 6830 | 99.9 | Plus |
CG1882-RA | 1954 | CG1882-RA | 351..1719 | 13..1381 | 6830 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7813279..7814510 | 150..1381 | 6160 | 100 | Plus |
2R | 25286936 | 2R | 7812854..7812993 | 13..152 | 685 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:47:29 has no hits.
BS18026.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:26 Download gff for
BS18026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 1..1365 | 17..1381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:38 Download gff for
BS18026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 353..1716 | 17..1380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:50 Download gff for
BS18026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 355..1718 | 17..1380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:26 Download gff for
BS18026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 347..1719 | 10..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:50 Download gff for
BS18026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 355..1718 | 17..1380 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:50 Download gff for
BS18026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7812858..7812992 | 17..151 | 100 | -> | Plus |
2R | 7813281..7814509 | 152..1380 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:50 Download gff for
BS18026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3700363..3700497 | 17..151 | 100 | -> | Plus |
arm_2R | 3700786..3702014 | 152..1380 | 100 | | Plus |
BS18026.3prime Sequence
819 bp (800 high quality bases) assembled on 2007-06-06
> BS18026.3prime
ATGGTCTAGAAAGCTTTCACTTCGGTTTGATGTTCGCCGCCAGTTCGTCG
GCGGTCGGCGTGGATGTGTCGGCTGCGGTGACAGGTTGGGGCACCGGCTG
GACTTCTGGCTGGACCTCGACCGTCTTCGCTGTGCTCAGGCTGGGCTCGC
GCTCCTCGTCGGACTCGGTGGATTCGCGGATTAGCTGCAGGGGCGTTATC
AGCTTGCCACCGGCCACCTTGTACATATCACAGGTCTCGTTCACGTAGCG
GTTGAACACGTCCGGCTTGTCGGCATATACGTGGTGGCCGGCGCCCGTCA
CGATCTTGATGTCCACCATATTGCTGCCGCGCTGCGACTTGATCTTCTCC
CCCGACGACGAGTCGATCCACGAACGGGAGCCGTAGATGAACGTGATTGG
TATGTCGCTGCGCACGTCCTTGATGCGGTGAATCATGGGGTGCTTGGCCC
ATCCAAAGGATTGCATCATTGTGTGGAAGGCGGACTCACCGCTGGGATTC
TGCGCATTGCACTGGTGTATGTACTGCGGCAGCAAGTTGATATCCTCCTC
GATGGTGCTCTGGAACTTTCGCATAATGTCTGGCCGCGTCTTTTGCACCA
CCCACTGGCCAAAGGGTCCGGCGGCGCGGAGAGCCCACAACGGATTTAGC
GGGGTCAGTACTCTAGCTATGGCCCGCACCCAGAGCGGTATTGTTTTGCC
GTTGGTCGAATCCGAGGGCTTCTCGGGGAAGCCCCAGGGATCGGCTAGTA
TGAGGTGTTTCACACGCTCCGGATGTGAGAGGGCGTAGCTGGAGGCAATG
AAGCCGCCCATCGAGTGGC
BS18026.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-PA | 1365 | CG1882-RA | 563..1365 | 819..17 | 4015 | 100 | Minus |
CG1882-PC | 1164 | CG1882-RC | 362..1164 | 819..17 | 4015 | 100 | Minus |
CG1882-PD | 1164 | CG1882-RD | 362..1164 | 819..17 | 4015 | 100 | Minus |
CG1882-PB | 1164 | CG1882-RB | 362..1164 | 819..17 | 4015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-RG | 2695 | CG1882-RG | 917..1719 | 819..17 | 4015 | 100 | Minus |
CG1882-RF | 1756 | CG1882-RF | 719..1521 | 819..17 | 4015 | 100 | Minus |
CG1882-RE | 1668 | CG1882-RE | 631..1433 | 819..17 | 4015 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7813708..7814510 | 819..17 | 4015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:31:57 has no hits.
BS18026.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:24 Download gff for
BS18026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-PB | 362..1164 | 17..819 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:55 Download gff for
BS18026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RB | 548..1352 | 13..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:11 Download gff for
BS18026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RE | 631..1435 | 13..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:11 Download gff for
BS18026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7813708..7814512 | 13..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:55 Download gff for
BS18026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3701213..3702017 | 13..819 | 99 | | Minus |
BS18026.5prime Sequence
835 bp (777 high quality bases) assembled on 2007-06-06
> BS18026.5prime
GAAGTTATCAGTCGACATGAGCGAACCGCTAGCATTGGCGAGCGGCGGCG
TGGTGGATCCAACGGCCGCATCCACCAGCGTCACTATTTCGAACCTGCCA
CAGCCAACAGTTGCGCTGGGATCGGAATCTAAATCGTCCATGGACCTAGA
GGATCCCCGGAACAATAGATTCTTTCTCTGGAAATGGTTGTGTAACTGGA
CATCCAGCTCACCAACTATGCTGCGTGCCGTGGAGAAGAAGATACTGTCG
TACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGT
GGGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGG
AGGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGG
GTGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGA
CATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGC
TGGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAG
ATGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCAT
TGCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATAC
TAGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGC
AAAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCT
AAATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGG
TGCAAAAGACGCGGCCAGACATTATGCGAAAGTTC
BS18026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-PA | 1365 | CG1882-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
CG1882-PC | 1164 | CG1882-RC | 1..618 | 218..835 | 3090 | 100 | Plus |
CG1882-PD | 1164 | CG1882-RD | 1..618 | 218..835 | 3090 | 100 | Plus |
CG1882-PB | 1164 | CG1882-RB | 1..618 | 218..835 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:16:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-RG | 2695 | CG1882-RG | 351..1173 | 13..835 | 4100 | 99.9 | Plus |
CG1882-RF | 1756 | CG1882-RF | 153..975 | 13..835 | 4100 | 99.9 | Plus |
CG1882-RA | 1954 | CG1882-RA | 351..1173 | 13..835 | 4100 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:16:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7813279..7813964 | 150..835 | 3430 | 100 | Plus |
2R | 25286936 | 2R | 7812854..7812993 | 13..152 | 685 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:16:10 has no hits.
BS18026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:30 Download gff for
BS18026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:49 Download gff for
BS18026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 349..1173 | 10..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:42 Download gff for
BS18026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1882-RA | 349..1173 | 10..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:42 Download gff for
BS18026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7812852..7812992 | 10..151 | 98 | -> | Plus |
2R | 7813281..7813964 | 152..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:49 Download gff for
BS18026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3700357..3700497 | 10..151 | 98 | -> | Plus |
arm_2R | 3700786..3701469 | 152..835 | 100 | | Plus |
BS18026.pep Sequence
Translation from 16 to 1380
> BS18026.pep
MSEPLALASGGVVDPTAASTSVTISNLPQPTVALGSESKSSMDLEDPRNN
RFFLWKWLCNWTSSSPTMLRAVEKKILSYVKLPYRGFFVDIGPAVGEADK
IWTISMNTESKEVPLVLLHGLGAGIALWVMNLDAFAKGRPVYAMDILGFG
RSSRPLFAKDALVCEKQFVKSVEEWRREMNINDMILLGHSMGGFIASSYA
LSHPERVKHLILADPWGFPEKPSDSTNGKTIPLWVRAIARVLTPLNPLWA
LRAAGPFGQWVVQKTRPDIMRKFQSTIEEDINLLPQYIHQCNAQNPSGES
AFHTMMQSFGWAKHPMIHRIKDVRSDIPITFIYGSRSWIDSSSGEKIKSQ
RGSNMVDIKIVTGAGHHVYADKPDVFNRYVNETCDMYKVAGGKLITPLQL
IRESTESDEEREPSLSTAKTVEVQPEVQPVPQPVTAADTSTPTADELAAN
IKPK*
BS18026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1882-PG | 454 | CG1882-PG | 1..454 | 1..454 | 2383 | 100 | Plus |
CG1882-PF | 454 | CG1882-PF | 1..454 | 1..454 | 2383 | 100 | Plus |
CG1882-PA | 454 | CG1882-PA | 1..454 | 1..454 | 2383 | 100 | Plus |
CG1882-PE | 387 | CG1882-PE | 1..387 | 68..454 | 2031 | 100 | Plus |
CG1882-PB | 387 | CG1882-PB | 1..387 | 68..454 | 2031 | 100 | Plus |