Clone BS18027 Report

Search the DGRC for BS18027

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG15096-RA
Protein status:BS18027.pep: full length peptide match
Sequenced Size:1508

Clone Sequence Records

BS18027.3prime Sequence

819 bp (781 high quality bases) assembled on 2007-06-06

> BS18027.3prime
ATGGTCTAGAAAGCTTCTAGTGCTGCGACTCCACCTGGGGCGTGGAGTTG
CGACGAGGCTTCGCCGGAGGATCGTTCCAGGGCTGGACATTCGCCTTGCC
GAAGATCACGTACAGAGTATTGCCCACCAGGTAGAATCCGGCTGCAATGA
AGAACACAATGCGCCACTGCTCGGGATCGTGCTCATTTGTGACAATGAAT
CCGACGATCAGCGGAGCAATGATGCTCATAATGTTGGCCACGCCGTTGGT
GATGCCCATGAGGATGCCAGCGAAGTTGGGCGACAGATCGATGTGGTTCG
TGTTGAAGCCCAGGTAGGTCGCTCCATTCATGCCCACGGTGAAACAGAGT
AGGACCACAGCCAGTTCCGACTGATCTGGGTTCACATAGCCAAGGCCAAC
CAAGGTGACCATAGGAATCCACAGACCAATGGAGTTGAAGAGCTTCCTGC
TCGTAGACCTTGAAATGCAGTTGCGGTTGTTCAACTGTGCGGATATCGAC
GAGAATACAAAGGACATGGCGAACATGCAGACGTAGGGCAGCGAGGAGAG
AAGAGCATTCGACTTGATGTCCTTGCCCAGGATGTTCTTCATGTAGCTGG
GGATCTCGGTGAGCAGGGTCCAGAAACCCCAGTTGTGCACCGAGTGTGAG
ACGATTAGGACGAGGAAAGCGGGTGAAGTGAAGAAGCTCAGCCAGGGCGT
GGGCAACTGCTCCTTCGGCTGTTCCTGGCCACCGCTCACCTCGTCGGCCT
GCGACATCTCGATCAGCTTCTTCTCCTCCGCCCGAATGGACTTGCACTCT
TGTGGCGATCCTGCGCCGA

BS18027.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-PA 1476 CG15096-RA 674..1476 819..17 3940 99.6 Minus
CG15096-PB 1428 CG15096-RB 626..1428 819..17 3940 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-RC 3536 CG15096-RC 2478..3281 819..16 3975 99.6 Minus
CG15096-RB 1783 CG15096-RB 725..1528 819..16 3975 99.6 Minus
CG15096-RA 2060 CG15096-RA 1002..1805 819..16 3975 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18808890..18809527 182..819 3145 99.5 Plus
2R 25286936 2R 18808611..18808778 16..183 840 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:38:37 has no hits.

BS18027.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:34 Download gff for BS18027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15096-PB 627..1428 17..818 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:49 Download gff for BS18027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 1003..1814 10..818 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:42 Download gff for BS18027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 1003..1814 10..818 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:42 Download gff for BS18027.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18808602..18808776 10..181 98 <- Plus
2R 18808890..18809526 182..818 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:49 Download gff for BS18027.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14696107..14696281 10..181 98 <- Plus
arm_2R 14696395..14697031 182..818 99   Plus

BS18027.5prime Sequence

781 bp (728 high quality bases) assembled on 2007-06-06

> BS18027.5prime
GAAGTTATCCGTCGACATGAAACTCATGTGTTGCGGTGGCAGCAATGGAA
CCATGGACATGGAAGCCAAAAACTCTAACAAAGAGGATGAGGCCGTGGGC
AAACACTCCGGCTTGGGTGTCCGTCACTTCCAGGTCTTACTGCTATTCTT
TGCCCTTACGGTGGCCTATGGCTGCCGAGTCAACCTCTCCGTGGCTGTGG
TGGCCATGACCGATGCCGCCTCCGTCAATCCCGATTTTCCCGAGTATAAT
TGGTCGGAGAAGACGAAATCCCTGCTGCTGAGCAGCTTCTTCTGGGGCTA
TGTGATCACCCAGGTGCCAGCTGGTCAATTGGCTCGCAAATATGGCGGCA
AAGTGATGATCCTGTCGGGACTGGCCATCTGCTCGATCCTGAACATCCTG
ACACCCATTTGCGCAAAGATCGGAGGCTGGCAGCTGGTCTGCGCCCTACG
AGTGGTGGAAGGTCTGTGCCAGGGCGTGGTCTTTCCCTCAACCCACACGA
TCCTCTCCCAATGGGCACCGCCCAAGGAGCGTGCCACGTTGGGAACCTGT
GCCTACTCGGGTAACCAGTTCGGAACGATTCTCATGCTGGCCACCAGTGG
AGTGATTGCAGCCTCGCCAATCGGCTGGCCCAGCATCTTCTATATCTCTG
GAGGAATCGGATGCGTGTGGTCGGTGGTGTACTTCTTCTTCGGCGCANGA
TCGCCACAAGAGTGCAAGTCCATTTCGGCGGAGGAGAAGAAGCTGATCGA
GATGTCGCANGCCGACGAGGTGAGCGGTGGC

BS18027.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-PA 1476 CG15096-RA 1..765 17..781 3787 99.7 Plus
CG15096-PB 1428 CG15096-RB 41..717 105..781 3347 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-RC 3536 CG15096-RC 1804..2569 16..781 3808 99.7 Plus
CG15096-RA 2060 CG15096-RA 328..1093 16..781 3808 99.7 Plus
CG15096-RB 1783 CG15096-RB 140..816 105..781 3363 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18809436..18809975 781..242 2678 99.6 Minus
2R 25286936 2R 18810041..18810178 242..105 690 100 Minus
2R 25286936 2R 18814604..18814692 104..16 445 100 Minus
Blast to na_te.dros performed on 2015-02-05 14:04:03 has no hits.

BS18027.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:39 Download gff for BS18027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15096-PA 1..765 17..781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:30 Download gff for BS18027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 323..1093 11..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:16:49 Download gff for BS18027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 323..1093 11..781 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:16:49 Download gff for BS18027.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18809436..18809975 242..781 99 <- Minus
2R 18810042..18810178 105..241 100 <- Minus
2R 18814604..18814697 11..104 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:30 Download gff for BS18027.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14696941..14697480 242..781 99 <- Minus
arm_2R 14697547..14697683 105..241 100 <- Minus
arm_2R 14702109..14702202 11..104 97   Minus

BS18027.complete Sequence

1508 bp assembled on 2008-08-15

GenBank Submission: KX801070

> BS18027.complete
GAAGTTATCCGTCGACATGAAACTCATGTGTTGCGGTGGCAGCAATGGAA
CCATGGACATGGAAGCCAAAAACTCTAACAAAGAGGATGAGGCCGTGGGC
AAACACTCCGGCTTGGGTGTCCGTCACTTCCAGGTCTTACTGCTATTCTT
TGCCCTTACGGTGGCCTATGGCTGCCGAGTCAACCTCTCCGTGGCTGTGG
TGGCCATGACCGATGCCGCCTCCGTCAATCCCGATTTTCCCGAGTATAAT
TGGTCGGAGAAGACGAAATCCCTGCTGCTGAGCAGCTTCTTCTGGGGCTA
TGTGATCACCCAGGTGCCAGCTGGTCAATTGGCTCGCAAATATGGCGGCA
AAGTGATGATCCTGTCGGGACTGGCCATCTGCTCGATCCTGAACATCCTG
ACACCCATTTGCGCAAAGATCGGAGGCTGGCAGCTGGTCTGCGCCCTACG
AGTGGTGGAAGGTCTGTGCCAGGGCGTGGTCTTTCCCTCAACCCACACGA
TCCTCTCCCAATGGGCACCGCCCAAGGAGCGTGCCACGTTGGGAACCTGT
GCCTACTCGGGTAACCAGTTCGGAACGATTCTCATGCTGGCCACCAGTGG
AGTGATTGCAGCCTCGCCAATCGGCTGGCCCAGCATCTTCTATATCTCTG
GAGGAATCGGATGCGTGTGGTCGGTGGTGTACTTCTTCTTCGGCGCAGGA
TCGCCACAAGAGTGCAAGTCCATTTCGGCGGAGGAGAAGAAGCTGATCGA
GATGTCGCAGGCCGACGAGGTGAGCGGTGGCCAGGAACAGCCGAAGGAGC
AGTTGCCCACGCCCTGGCTGAGCTTCTTCACTTCACCCGCTTTCCTCGTC
CTAATCGTCTCACACTCGGTGCACAACTGGGGTTTCTGGACCCTGCTCAC
CGAGATCCCCAGCTACATGAAGAACATCCTGGGCAAGGACATCAAGTCGA
ATGCTCTTCTCTCCTCGCTGCCCTACGTCTGCATGTTCGCCATGTCCTTT
GTATTCTCGTCGATATCCGCACAGTTGAACAACCGCAACTGCATTTCAAG
GTCTACGAGCAGGAAGCTCTTCAACTCCATTGGTCTGTGGATTCCTATGG
TCACCTTGGTTGGCCTTGGCTATGTGAACCCAGATCAGTCGGAACTGGCT
GTGGTCCTACTCTGTTTCACCGTGGGCATGAATGGAGCGACCTACCTGGG
CTTCAACACGAACCACATCGATCTGTCGCCCAACTTCGCTGGCATCCTCA
TGGGCATCACCAACGGCGTGGCCAACATTATGAGCATCATTGCTCCGCTG
ATCGTCGGATTCATTGTCACAAATGAGCACGATCCCGAGCAGTGGCGCAT
TGTGTTCTTCATTGCAGCCGGATTCTACCTGGTGGGCAATACTCTGTACG
TGATCTTCGGCAAGGCGAATGTCCAGCCCTGGAACGATCCTCCGGCGAAG
CCTCGTCGCAACTCCACGCCCCAGGTGGAGTCGCAGCACTAGAAGCTTTC
TAGACCAT

BS18027.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-RC 1476 CG15096-PC 1..1476 17..1492 7365 99.9 Plus
CG15096-RA 1476 CG15096-PA 1..1476 17..1492 7365 99.9 Plus
CG15096-RB 1428 CG15096-PB 41..1428 105..1492 6925 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-RC 3536 CG15096-RC 1804..3281 16..1493 7375 99.9 Plus
CG15096-RA 2060 CG15096-RA 328..1805 16..1493 7375 99.9 Plus
CG15096-RB 1783 CG15096-RB 140..1528 105..1493 6930 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18808890..18809975 1327..242 5415 99.9 Minus
2R 25286936 2R 18808611..18808778 1493..1326 840 100 Minus
2R 25286936 2R 18810041..18810178 242..105 690 100 Minus
2R 25286936 2R 18814604..18814692 104..16 445 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:52:52 has no hits.

BS18027.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:30:01 Download gff for BS18027.complete
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 313..1804 11..1499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:26 Download gff for BS18027.complete
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 329..1804 17..1492 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:40 Download gff for BS18027.complete
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 319..1794 17..1492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:34 Download gff for BS18027.complete
Subject Subject Range Query Range Percent Splice Strand
CG15096-RA 329..1804 17..1492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:34 Download gff for BS18027.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18808612..18808776 1328..1492 100 <- Minus
2R 18808890..18809975 242..1327 99 <- Minus
2R 18810042..18810178 105..241 100 <- Minus
2R 18814604..18814691 17..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:26 Download gff for BS18027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14696117..14696281 1328..1492 100 <- Minus
arm_2R 14696395..14697480 242..1327 99 <- Minus
arm_2R 14697547..14697683 105..241 100 <- Minus
arm_2R 14702109..14702196 17..104 100   Minus

BS18027.pep Sequence

Translation from 16 to 1491

> BS18027.pep
MKLMCCGGSNGTMDMEAKNSNKEDEAVGKHSGLGVRHFQVLLLFFALTVA
YGCRVNLSVAVVAMTDAASVNPDFPEYNWSEKTKSLLLSSFFWGYVITQV
PAGQLARKYGGKVMILSGLAICSILNILTPICAKIGGWQLVCALRVVEGL
CQGVVFPSTHTILSQWAPPKERATLGTCAYSGNQFGTILMLATSGVIAAS
PIGWPSIFYISGGIGCVWSVVYFFFGAGSPQECKSISAEEKKLIEMSQAD
EVSGGQEQPKEQLPTPWLSFFTSPAFLVLIVSHSVHNWGFWTLLTEIPSY
MKNILGKDIKSNALLSSLPYVCMFAMSFVFSSISAQLNNRNCISRSTSRK
LFNSIGLWIPMVTLVGLGYVNPDQSELAVVLLCFTVGMNGATYLGFNTNH
IDLSPNFAGILMGITNGVANIMSIIAPLIVGFIVTNEHDPEQWRIVFFIA
AGFYLVGNTLYVIFGKANVQPWNDPPAKPRRNSTPQVESQH*

BS18027.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG15096-PC 491 CG15096-PC 1..491 1..491 2586 100 Plus
CG15096-PA 491 CG15096-PA 1..491 1..491 2586 100 Plus
CG15096-PB 475 CG15096-PB 6..475 18..491 2429 98.3 Plus
MFS15-PA 497 CG15094-PA 25..471 34..476 1325 56.3 Plus
MFS15-PB 443 CG15094-PB 1..417 64..476 1219 55.4 Plus