Clone Sequence Records
BS18027.3prime Sequence
819 bp (781 high quality bases) assembled on 2007-06-06
> BS18027.3prime
ATGGTCTAGAAAGCTTCTAGTGCTGCGACTCCACCTGGGGCGTGGAGTTG
CGACGAGGCTTCGCCGGAGGATCGTTCCAGGGCTGGACATTCGCCTTGCC
GAAGATCACGTACAGAGTATTGCCCACCAGGTAGAATCCGGCTGCAATGA
AGAACACAATGCGCCACTGCTCGGGATCGTGCTCATTTGTGACAATGAAT
CCGACGATCAGCGGAGCAATGATGCTCATAATGTTGGCCACGCCGTTGGT
GATGCCCATGAGGATGCCAGCGAAGTTGGGCGACAGATCGATGTGGTTCG
TGTTGAAGCCCAGGTAGGTCGCTCCATTCATGCCCACGGTGAAACAGAGT
AGGACCACAGCCAGTTCCGACTGATCTGGGTTCACATAGCCAAGGCCAAC
CAAGGTGACCATAGGAATCCACAGACCAATGGAGTTGAAGAGCTTCCTGC
TCGTAGACCTTGAAATGCAGTTGCGGTTGTTCAACTGTGCGGATATCGAC
GAGAATACAAAGGACATGGCGAACATGCAGACGTAGGGCAGCGAGGAGAG
AAGAGCATTCGACTTGATGTCCTTGCCCAGGATGTTCTTCATGTAGCTGG
GGATCTCGGTGAGCAGGGTCCAGAAACCCCAGTTGTGCACCGAGTGTGAG
ACGATTAGGACGAGGAAAGCGGGTGAAGTGAAGAAGCTCAGCCAGGGCGT
GGGCAACTGCTCCTTCGGCTGTTCCTGGCCACCGCTCACCTCGTCGGCCT
GCGACATCTCGATCAGCTTCTTCTCCTCCGCCCGAATGGACTTGCACTCT
TGTGGCGATCCTGCGCCGA
BS18027.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-PA | 1476 | CG15096-RA | 674..1476 | 819..17 | 3940 | 99.6 | Minus |
CG15096-PB | 1428 | CG15096-RB | 626..1428 | 819..17 | 3940 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-RC | 3536 | CG15096-RC | 2478..3281 | 819..16 | 3975 | 99.6 | Minus |
CG15096-RB | 1783 | CG15096-RB | 725..1528 | 819..16 | 3975 | 99.6 | Minus |
CG15096-RA | 2060 | CG15096-RA | 1002..1805 | 819..16 | 3975 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18808890..18809527 | 182..819 | 3145 | 99.5 | Plus |
2R | 25286936 | 2R | 18808611..18808778 | 16..183 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:38:37 has no hits.
BS18027.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:34 Download gff for
BS18027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-PB | 627..1428 | 17..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:49 Download gff for
BS18027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 1003..1814 | 10..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:42 Download gff for
BS18027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 1003..1814 | 10..818 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:42 Download gff for
BS18027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18808602..18808776 | 10..181 | 98 | <- | Plus |
2R | 18808890..18809526 | 182..818 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:49 Download gff for
BS18027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14696107..14696281 | 10..181 | 98 | <- | Plus |
arm_2R | 14696395..14697031 | 182..818 | 99 | | Plus |
BS18027.5prime Sequence
781 bp (728 high quality bases) assembled on 2007-06-06
> BS18027.5prime
GAAGTTATCCGTCGACATGAAACTCATGTGTTGCGGTGGCAGCAATGGAA
CCATGGACATGGAAGCCAAAAACTCTAACAAAGAGGATGAGGCCGTGGGC
AAACACTCCGGCTTGGGTGTCCGTCACTTCCAGGTCTTACTGCTATTCTT
TGCCCTTACGGTGGCCTATGGCTGCCGAGTCAACCTCTCCGTGGCTGTGG
TGGCCATGACCGATGCCGCCTCCGTCAATCCCGATTTTCCCGAGTATAAT
TGGTCGGAGAAGACGAAATCCCTGCTGCTGAGCAGCTTCTTCTGGGGCTA
TGTGATCACCCAGGTGCCAGCTGGTCAATTGGCTCGCAAATATGGCGGCA
AAGTGATGATCCTGTCGGGACTGGCCATCTGCTCGATCCTGAACATCCTG
ACACCCATTTGCGCAAAGATCGGAGGCTGGCAGCTGGTCTGCGCCCTACG
AGTGGTGGAAGGTCTGTGCCAGGGCGTGGTCTTTCCCTCAACCCACACGA
TCCTCTCCCAATGGGCACCGCCCAAGGAGCGTGCCACGTTGGGAACCTGT
GCCTACTCGGGTAACCAGTTCGGAACGATTCTCATGCTGGCCACCAGTGG
AGTGATTGCAGCCTCGCCAATCGGCTGGCCCAGCATCTTCTATATCTCTG
GAGGAATCGGATGCGTGTGGTCGGTGGTGTACTTCTTCTTCGGCGCANGA
TCGCCACAAGAGTGCAAGTCCATTTCGGCGGAGGAGAAGAAGCTGATCGA
GATGTCGCANGCCGACGAGGTGAGCGGTGGC
BS18027.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-PA | 1476 | CG15096-RA | 1..765 | 17..781 | 3787 | 99.7 | Plus |
CG15096-PB | 1428 | CG15096-RB | 41..717 | 105..781 | 3347 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:04:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-RC | 3536 | CG15096-RC | 1804..2569 | 16..781 | 3808 | 99.7 | Plus |
CG15096-RA | 2060 | CG15096-RA | 328..1093 | 16..781 | 3808 | 99.7 | Plus |
CG15096-RB | 1783 | CG15096-RB | 140..816 | 105..781 | 3363 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18809436..18809975 | 781..242 | 2678 | 99.6 | Minus |
2R | 25286936 | 2R | 18810041..18810178 | 242..105 | 690 | 100 | Minus |
2R | 25286936 | 2R | 18814604..18814692 | 104..16 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 14:04:03 has no hits.
BS18027.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:00:39 Download gff for
BS18027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-PA | 1..765 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:30 Download gff for
BS18027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 323..1093 | 11..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:16:49 Download gff for
BS18027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 323..1093 | 11..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:16:49 Download gff for
BS18027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18809436..18809975 | 242..781 | 99 | <- | Minus |
2R | 18810042..18810178 | 105..241 | 100 | <- | Minus |
2R | 18814604..18814697 | 11..104 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:30 Download gff for
BS18027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14696941..14697480 | 242..781 | 99 | <- | Minus |
arm_2R | 14697547..14697683 | 105..241 | 100 | <- | Minus |
arm_2R | 14702109..14702202 | 11..104 | 97 | | Minus |
BS18027.complete Sequence
1508 bp assembled on 2008-08-15
GenBank Submission: KX801070
> BS18027.complete
GAAGTTATCCGTCGACATGAAACTCATGTGTTGCGGTGGCAGCAATGGAA
CCATGGACATGGAAGCCAAAAACTCTAACAAAGAGGATGAGGCCGTGGGC
AAACACTCCGGCTTGGGTGTCCGTCACTTCCAGGTCTTACTGCTATTCTT
TGCCCTTACGGTGGCCTATGGCTGCCGAGTCAACCTCTCCGTGGCTGTGG
TGGCCATGACCGATGCCGCCTCCGTCAATCCCGATTTTCCCGAGTATAAT
TGGTCGGAGAAGACGAAATCCCTGCTGCTGAGCAGCTTCTTCTGGGGCTA
TGTGATCACCCAGGTGCCAGCTGGTCAATTGGCTCGCAAATATGGCGGCA
AAGTGATGATCCTGTCGGGACTGGCCATCTGCTCGATCCTGAACATCCTG
ACACCCATTTGCGCAAAGATCGGAGGCTGGCAGCTGGTCTGCGCCCTACG
AGTGGTGGAAGGTCTGTGCCAGGGCGTGGTCTTTCCCTCAACCCACACGA
TCCTCTCCCAATGGGCACCGCCCAAGGAGCGTGCCACGTTGGGAACCTGT
GCCTACTCGGGTAACCAGTTCGGAACGATTCTCATGCTGGCCACCAGTGG
AGTGATTGCAGCCTCGCCAATCGGCTGGCCCAGCATCTTCTATATCTCTG
GAGGAATCGGATGCGTGTGGTCGGTGGTGTACTTCTTCTTCGGCGCAGGA
TCGCCACAAGAGTGCAAGTCCATTTCGGCGGAGGAGAAGAAGCTGATCGA
GATGTCGCAGGCCGACGAGGTGAGCGGTGGCCAGGAACAGCCGAAGGAGC
AGTTGCCCACGCCCTGGCTGAGCTTCTTCACTTCACCCGCTTTCCTCGTC
CTAATCGTCTCACACTCGGTGCACAACTGGGGTTTCTGGACCCTGCTCAC
CGAGATCCCCAGCTACATGAAGAACATCCTGGGCAAGGACATCAAGTCGA
ATGCTCTTCTCTCCTCGCTGCCCTACGTCTGCATGTTCGCCATGTCCTTT
GTATTCTCGTCGATATCCGCACAGTTGAACAACCGCAACTGCATTTCAAG
GTCTACGAGCAGGAAGCTCTTCAACTCCATTGGTCTGTGGATTCCTATGG
TCACCTTGGTTGGCCTTGGCTATGTGAACCCAGATCAGTCGGAACTGGCT
GTGGTCCTACTCTGTTTCACCGTGGGCATGAATGGAGCGACCTACCTGGG
CTTCAACACGAACCACATCGATCTGTCGCCCAACTTCGCTGGCATCCTCA
TGGGCATCACCAACGGCGTGGCCAACATTATGAGCATCATTGCTCCGCTG
ATCGTCGGATTCATTGTCACAAATGAGCACGATCCCGAGCAGTGGCGCAT
TGTGTTCTTCATTGCAGCCGGATTCTACCTGGTGGGCAATACTCTGTACG
TGATCTTCGGCAAGGCGAATGTCCAGCCCTGGAACGATCCTCCGGCGAAG
CCTCGTCGCAACTCCACGCCCCAGGTGGAGTCGCAGCACTAGAAGCTTTC
TAGACCAT
BS18027.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-RC | 1476 | CG15096-PC | 1..1476 | 17..1492 | 7365 | 99.9 | Plus |
CG15096-RA | 1476 | CG15096-PA | 1..1476 | 17..1492 | 7365 | 99.9 | Plus |
CG15096-RB | 1428 | CG15096-PB | 41..1428 | 105..1492 | 6925 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-RC | 3536 | CG15096-RC | 1804..3281 | 16..1493 | 7375 | 99.9 | Plus |
CG15096-RA | 2060 | CG15096-RA | 328..1805 | 16..1493 | 7375 | 99.9 | Plus |
CG15096-RB | 1783 | CG15096-RB | 140..1528 | 105..1493 | 6930 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18808890..18809975 | 1327..242 | 5415 | 99.9 | Minus |
2R | 25286936 | 2R | 18808611..18808778 | 1493..1326 | 840 | 100 | Minus |
2R | 25286936 | 2R | 18810041..18810178 | 242..105 | 690 | 100 | Minus |
2R | 25286936 | 2R | 18814604..18814692 | 104..16 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:52:52 has no hits.
BS18027.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:30:01 Download gff for
BS18027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 313..1804 | 11..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:26 Download gff for
BS18027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 329..1804 | 17..1492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:40 Download gff for
BS18027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 319..1794 | 17..1492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:34 Download gff for
BS18027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15096-RA | 329..1804 | 17..1492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:34 Download gff for
BS18027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18808612..18808776 | 1328..1492 | 100 | <- | Minus |
2R | 18808890..18809975 | 242..1327 | 99 | <- | Minus |
2R | 18810042..18810178 | 105..241 | 100 | <- | Minus |
2R | 18814604..18814691 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:26 Download gff for
BS18027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14696117..14696281 | 1328..1492 | 100 | <- | Minus |
arm_2R | 14696395..14697480 | 242..1327 | 99 | <- | Minus |
arm_2R | 14697547..14697683 | 105..241 | 100 | <- | Minus |
arm_2R | 14702109..14702196 | 17..104 | 100 | | Minus |
BS18027.pep Sequence
Translation from 16 to 1491
> BS18027.pep
MKLMCCGGSNGTMDMEAKNSNKEDEAVGKHSGLGVRHFQVLLLFFALTVA
YGCRVNLSVAVVAMTDAASVNPDFPEYNWSEKTKSLLLSSFFWGYVITQV
PAGQLARKYGGKVMILSGLAICSILNILTPICAKIGGWQLVCALRVVEGL
CQGVVFPSTHTILSQWAPPKERATLGTCAYSGNQFGTILMLATSGVIAAS
PIGWPSIFYISGGIGCVWSVVYFFFGAGSPQECKSISAEEKKLIEMSQAD
EVSGGQEQPKEQLPTPWLSFFTSPAFLVLIVSHSVHNWGFWTLLTEIPSY
MKNILGKDIKSNALLSSLPYVCMFAMSFVFSSISAQLNNRNCISRSTSRK
LFNSIGLWIPMVTLVGLGYVNPDQSELAVVLLCFTVGMNGATYLGFNTNH
IDLSPNFAGILMGITNGVANIMSIIAPLIVGFIVTNEHDPEQWRIVFFIA
AGFYLVGNTLYVIFGKANVQPWNDPPAKPRRNSTPQVESQH*
BS18027.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15096-PC | 491 | CG15096-PC | 1..491 | 1..491 | 2586 | 100 | Plus |
CG15096-PA | 491 | CG15096-PA | 1..491 | 1..491 | 2586 | 100 | Plus |
CG15096-PB | 475 | CG15096-PB | 6..475 | 18..491 | 2429 | 98.3 | Plus |
MFS15-PA | 497 | CG15094-PA | 25..471 | 34..476 | 1325 | 56.3 | Plus |
MFS15-PB | 443 | CG15094-PB | 1..417 | 64..476 | 1219 | 55.4 | Plus |