Clone BS18031 Report

Search the DGRC for BS18031

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptFuca-RB
Protein status:BS18031.pep: full length peptide match
Sequenced Size:1517

Clone Sequence Records

BS18031.complete Sequence

1517 bp assembled on 2009-12-07

GenBank Submission: KX805834

> BS18031.complete
GAAGTTATCAGTCGACATGGCAATCTCCGCTTGGATGCCGCTTCTGGTGG
CGCTGATCGTCGTGTGGATTTCGGCAGCGGAGGTCGACGCACAGGTGCCG
GGACCACGGACTCGATACCAACCCAACTGGGCCAGTTTGGACCAGAGACC
ATTGCCCCAATGGTACGACGATGCCAAGGTGGGCATCTTTCTGCACTACG
GCGTTTACTCGGTGCCCAGTTTTGGTTCCGAGTGGTTCTGGACCAACTGG
AAAAATCTTCGCAATCCAGAGTACGTCCAATTCATGCAGCGTAATTACAA
GCCCGACTTCACTTATCAGGAATTTGCCAGTCAATTCACAGCGGAGCTAT
TCAATGCCACCAAGTGGGCGTTACTTTTCAAAGATAGCGGAGCCAGATAT
GTTGTGCTCACCAGCAAACATCACGATGGCTTCACGCTGTGGCCCTCGAA
GAATAGCTACGGATGGAATTCCATGGATGTGGGACCCAAACGAGATATAG
TCAAGGAACTGGCTGCCGCAATTCGAAAGGAGTCCGATCTTCGTTTTGGA
CTCTATTATTCTCTATTCGAATGGTTCAACCCACTGTGGACCGATGACAA
ATTGCATCTGTTAATGCAACAGCACTTTGTGGAGCGAAAGGTGCGGCCGG
AGCAAATGGAACTGGTGCAGCAGTATCTGCCGGAGATCATCTGGTCCGAT
GGCGATTGGGAGGCTCCAGCGAAATACTGGCGCTCCGAGGAGTTCATCGC
CTGGCTATATAATGATAGTCCTGTAAGGGATACGGTGGTGACCAACGATC
GCTGGGGCTTCGGCACTGCGTGTATGCATGGTGACTTCTACAATTGTGCC
GATCGCTTCAATCCCGGTGTTCTGCAAGCTCACAAGTGGGAAAATGCCTT
CACCCTGGATCGCACCAGCTGGGGTCAGCGATTCGATGTCTCTTTGTCCG
ATTTTATGACCTCCAAGGAAGTCATTAAAGAGATTATCACCACTGTGAGC
TGTAATGGCAATGTGCTGATCAATGTTGGACCAACCAAGTTTGGTACCAT
ACTGCCCATTTTCGAGGAGCGTCTAAGGGACATGGGTCGCTGGCTGAAGT
TCAATGGCGAGGGTATTTACGGCAGTGTACCCTGGATTTATCAGAATGAT
ACCATCAATGGAAATGTTTGGTATACGCGGCAAAAGGAGGCATCCAATGG
AAAAATCACCATATACGCATTTGTGCTGGAGTATCCGTACGACACCAATG
AACTGGATATCTATCCGCTTGGCAAGGATATCAATATATTCCGAAATGTA
ATGCTGACTGGAATCGATATGGGCACCGGTGGAGATATTCTGAATGAGCA
AAGCACTGAGGTTGTCATGTTGGGCATGGAGGATACCAAAATTAAGTGGA
ATGCTGATCATAACCGGCTACACATCGTGTTTCCACCTAAAAATCACATC
GATAAAAGAGGTCTTGACTATGCCTGGACTTTTAAAATAACTATAACGTA
GAAGCTTTCTAGACCAT

BS18031.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Fuca-RC 1485 CG6128-PC 1..1485 17..1501 7425 100 Plus
Fuca-RB 1485 CG6128-PB 1..1485 17..1501 7425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 3514 CG11714-RD 1917..3401 17..1501 7425 100 Plus
Fuca-RC 3513 CG6128-RC 1917..3401 17..1501 7425 100 Plus
Fuca-RB 1675 CG6128-RB 79..1563 17..1501 7425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11519558..11520034 980..504 2385 100 Minus
3L 28110227 3L 11519079..11519496 1396..979 2090 100 Minus
3L 28110227 3L 11520509..11520746 254..17 1190 100 Minus
3L 28110227 3L 11520294..11520435 396..255 710 100 Minus
3L 28110227 3L 11520106..11520214 503..395 545 100 Minus
3L 28110227 3L 11518910..11519016 1501..1395 535 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:47:17 has no hits.

BS18031.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:27 Download gff for BS18031.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 1..1485 17..1501 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:37 Download gff for BS18031.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 1917..3401 17..1501 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:43 Download gff for BS18031.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 79..1563 17..1501 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:28 Download gff for BS18031.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 1912..3401 10..1501 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:46 Download gff for BS18031.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 79..1563 17..1501 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:46 Download gff for BS18031.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11518910..11519014 1397..1501 100 <- Minus
3L 11519079..11519494 981..1396 100 <- Minus
3L 11519558..11520034 504..980 100 <- Minus
3L 11520106..11520212 397..503 100 <- Minus
3L 11520294..11520435 255..396 100 <- Minus
3L 11520509..11520746 17..254 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:43 Download gff for BS18031.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11512010..11512114 1397..1501 100 <- Minus
arm_3L 11512179..11512594 981..1396 100 <- Minus
arm_3L 11512658..11513134 504..980 100 <- Minus
arm_3L 11513206..11513312 397..503 100 <- Minus
arm_3L 11513394..11513535 255..396 100 <- Minus
arm_3L 11513609..11513846 17..254 100   Minus

BS18031.3prime Sequence

644 bp (573 high quality bases) assembled on 2007-06-06

> BS18031.3prime
ATGGTCTAGAAAGCTTCTACGTTATAGTTATTTTAAAAGTCCAGGCATAG
TCAAGACCTCTTTTATCGATGTGATTTTTAGGTGGAAACACGATGTGTAG
CCGGTTATGATCAGCATTCCACTTAATTTTGGTATCCTCCATGCCCAACA
TGACAACCTCAGTGCTTTGCTCATTCAGAATATCTCCACCGGTGCCCATA
TCGATTCCAGTCAGCATTACATTTCGGAATATATTGATATCCTTGCCAAG
CGGATAGATATCCAGTTCATTGGTGTCGTACGGATACTCCAGCACAAATG
CGTATATGGTGATTTTTCCATTGGATGCCTCCTTTTGCCGCGTATACCAA
ACATTTCCATTGATGGTATCATTCTGATAAATCCAGGGTACACTGCCGTA
AATACCCTCGCCATTGAACTTCAGCCAGCGACCCATGTCCCTTAGACGCT
CCTCGAAAATGGGCAGTATGGTACCAAACTTGGTTGGTCCAACATTGATC
AGCACATTGCCATTACAGCTCACAGTGGTGATAATCTCTTTAATGACTTC
CTTGGAGGTCATAAAATCGGACAAAGAGACATCGAATCGCTGACCCCAGC
TGGTGCGATCCAGGGTGAAGGCATTTTCCCACTTGTGAGCTTGC

BS18031.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6128-PA 1485 CG6128-RA 858..1485 644..17 3140 100 Minus
CG6128-PB 1485 CG6128-RB 858..1485 644..17 3140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 3514 CG11714-RD 2774..3401 644..17 3140 100 Minus
Fuca-RC 3513 CG6128-RC 2774..3401 644..17 3140 100 Minus
Fuca-RB 1675 CG6128-RB 936..1563 644..17 3140 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11519079..11519496 122..539 2090 100 Plus
3L 28110227 3L 11518910..11519016 17..123 535 100 Plus
3L 28110227 3L 11519558..11519664 538..644 535 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:38:52 has no hits.

BS18031.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:01:13 Download gff for BS18031.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6128-PB 858..1485 17..644 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:53 Download gff for BS18031.3prime
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 936..1563 17..644 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:19 Download gff for BS18031.3prime
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 936..1563 17..644 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:19 Download gff for BS18031.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11518910..11519014 17..121 100 <- Plus
3L 11519079..11519494 122..537 100 <- Plus
3L 11519558..11519664 538..644 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:53 Download gff for BS18031.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11512010..11512114 17..121 100 <- Plus
arm_3L 11512179..11512594 122..537 100 <- Plus
arm_3L 11512658..11512764 538..644 100   Plus

BS18031.5prime Sequence

893 bp (773 high quality bases) assembled on 2007-06-06

> BS18031.5prime
GAAGTTATCAGTCGACATGGCAATCTCCGCTTGGATGCCGCTTCTGGTGG
CGCTGATCGTCGTGTGGATTTCGGCAGCGGAGGTCGACGCACAGGTGCCG
GGACCACGGACTCGATACCAACCCAACTGGGCCAGTTTGGACCAGAGACC
ATTGCCCCAATGGTACGACGATGCCAAGGTGGGCATCTTTCTGCACTACG
GCGTTTACTCGGTGCCCAGTTTTGGTTCCGAGTGGTTCTGGACCAACTGG
AAAAATCTTCGCAATCCAGAGTACGTCCAATTCATGCAGCGTAATTACAA
GCCCGACTTCACTTATCAGGAATTTGCCAGTCAATTCACAGCGGAGCTAT
TCAATGCCACCAAGTGGGCGTTACTTTTCAAAGATAGCGGAGCCAGATAT
GTTGTGCTCACCAGCAAACATCACGATGGCTTCACGCTGTGGCCCTCGAA
GAATAGCTACGGATGGAATTCCATGGATGTGGGACCCAAACGAGATATAG
TCAAGGAACTGGCTGCCGCAATTCGAAAGGAGTCCGATCTTCGTTTTGGA
CTCTATTATTCTCTATTCGAATGGTTCAACCCACTGTGGACCGATGACAA
ATTGCATCTGTTAATGCAACAGCACTTTGTGGAGCGAAAGGTGCGGCCGG
AGCAAATGGAACTGGTGCAGCAGTATCTGCCGGAGATCATCTGGTCCGAT
GGCGATTGGGAGGCTCCAGCGAAATACTGGCGCTCCGAGGAGTTCATCGC
CTGGCTATATAATGATAGTCCTGTAAGGGATACGGTGGTGACCAACGATC
GCTGGGGCTTCGGCACTGCGTGTATGCATGGTGACTTCTACAATTGTGCC
GATCGCTTTCATCCCGGTGTTCTGCAAGCTCACAAGTGGGAAA

BS18031.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6128-PA 1485 CG6128-RA 1..877 17..893 4335 99.7 Plus
CG6128-PB 1485 CG6128-RB 1..877 17..893 4335 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 3514 CG11714-RD 1917..2793 17..893 4355 99.8 Plus
Fuca-RC 3513 CG6128-RC 1917..2793 17..893 4355 99.8 Plus
Fuca-RB 1675 CG6128-RB 79..955 17..893 4355 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11519645..11520034 893..504 1920 99.5 Minus
3L 28110227 3L 11520509..11520746 254..17 1190 100 Minus
3L 28110227 3L 11520294..11520435 396..255 710 100 Minus
3L 28110227 3L 11520106..11520214 503..395 545 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:16:20 has no hits.

BS18031.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:01:18 Download gff for BS18031.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6128-PB 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:54 Download gff for BS18031.5prime
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 74..952 10..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:06 Download gff for BS18031.5prime
Subject Subject Range Query Range Percent Splice Strand
Fuca-RB 74..952 10..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:06 Download gff for BS18031.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11520106..11520212 397..503 100 <- Minus
3L 11520294..11520435 255..396 100 <- Minus
3L 11520509..11520751 10..254 98   Minus
3L 11519648..11520034 504..890 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:54 Download gff for BS18031.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11512748..11513134 504..890 99 <- Minus
arm_3L 11513206..11513312 397..503 100 <- Minus
arm_3L 11513394..11513535 255..396 100 <- Minus
arm_3L 11513609..11513851 10..254 98   Minus

BS18031.pep Sequence

Translation from 16 to 1500

> BS18031.pep
MAISAWMPLLVALIVVWISAAEVDAQVPGPRTRYQPNWASLDQRPLPQWY
DDAKVGIFLHYGVYSVPSFGSEWFWTNWKNLRNPEYVQFMQRNYKPDFTY
QEFASQFTAELFNATKWALLFKDSGARYVVLTSKHHDGFTLWPSKNSYGW
NSMDVGPKRDIVKELAAAIRKESDLRFGLYYSLFEWFNPLWTDDKLHLLM
QQHFVERKVRPEQMELVQQYLPEIIWSDGDWEAPAKYWRSEEFIAWLYND
SPVRDTVVTNDRWGFGTACMHGDFYNCADRFNPGVLQAHKWENAFTLDRT
SWGQRFDVSLSDFMTSKEVIKEIITTVSCNGNVLINVGPTKFGTILPIFE
ERLRDMGRWLKFNGEGIYGSVPWIYQNDTINGNVWYTRQKEASNGKITIY
AFVLEYPYDTNELDIYPLGKDINIFRNVMLTGIDMGTGGDILNEQSTEVV
MLGMEDTKIKWNADHNRLHIVFPPKNHIDKRGLDYAWTFKITIT*

BS18031.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Fuca-PC 494 CG6128-PC 1..494 1..494 2719 100 Plus
Fuca-PB 494 CG6128-PB 1..494 1..494 2719 100 Plus