Clone Sequence Records
BS18031.complete Sequence
1517 bp assembled on 2009-12-07
GenBank Submission: KX805834
> BS18031.complete
GAAGTTATCAGTCGACATGGCAATCTCCGCTTGGATGCCGCTTCTGGTGG
CGCTGATCGTCGTGTGGATTTCGGCAGCGGAGGTCGACGCACAGGTGCCG
GGACCACGGACTCGATACCAACCCAACTGGGCCAGTTTGGACCAGAGACC
ATTGCCCCAATGGTACGACGATGCCAAGGTGGGCATCTTTCTGCACTACG
GCGTTTACTCGGTGCCCAGTTTTGGTTCCGAGTGGTTCTGGACCAACTGG
AAAAATCTTCGCAATCCAGAGTACGTCCAATTCATGCAGCGTAATTACAA
GCCCGACTTCACTTATCAGGAATTTGCCAGTCAATTCACAGCGGAGCTAT
TCAATGCCACCAAGTGGGCGTTACTTTTCAAAGATAGCGGAGCCAGATAT
GTTGTGCTCACCAGCAAACATCACGATGGCTTCACGCTGTGGCCCTCGAA
GAATAGCTACGGATGGAATTCCATGGATGTGGGACCCAAACGAGATATAG
TCAAGGAACTGGCTGCCGCAATTCGAAAGGAGTCCGATCTTCGTTTTGGA
CTCTATTATTCTCTATTCGAATGGTTCAACCCACTGTGGACCGATGACAA
ATTGCATCTGTTAATGCAACAGCACTTTGTGGAGCGAAAGGTGCGGCCGG
AGCAAATGGAACTGGTGCAGCAGTATCTGCCGGAGATCATCTGGTCCGAT
GGCGATTGGGAGGCTCCAGCGAAATACTGGCGCTCCGAGGAGTTCATCGC
CTGGCTATATAATGATAGTCCTGTAAGGGATACGGTGGTGACCAACGATC
GCTGGGGCTTCGGCACTGCGTGTATGCATGGTGACTTCTACAATTGTGCC
GATCGCTTCAATCCCGGTGTTCTGCAAGCTCACAAGTGGGAAAATGCCTT
CACCCTGGATCGCACCAGCTGGGGTCAGCGATTCGATGTCTCTTTGTCCG
ATTTTATGACCTCCAAGGAAGTCATTAAAGAGATTATCACCACTGTGAGC
TGTAATGGCAATGTGCTGATCAATGTTGGACCAACCAAGTTTGGTACCAT
ACTGCCCATTTTCGAGGAGCGTCTAAGGGACATGGGTCGCTGGCTGAAGT
TCAATGGCGAGGGTATTTACGGCAGTGTACCCTGGATTTATCAGAATGAT
ACCATCAATGGAAATGTTTGGTATACGCGGCAAAAGGAGGCATCCAATGG
AAAAATCACCATATACGCATTTGTGCTGGAGTATCCGTACGACACCAATG
AACTGGATATCTATCCGCTTGGCAAGGATATCAATATATTCCGAAATGTA
ATGCTGACTGGAATCGATATGGGCACCGGTGGAGATATTCTGAATGAGCA
AAGCACTGAGGTTGTCATGTTGGGCATGGAGGATACCAAAATTAAGTGGA
ATGCTGATCATAACCGGCTACACATCGTGTTTCCACCTAAAAATCACATC
GATAAAAGAGGTCTTGACTATGCCTGGACTTTTAAAATAACTATAACGTA
GAAGCTTTCTAGACCAT
BS18031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fuca-RC | 1485 | CG6128-PC | 1..1485 | 17..1501 | 7425 | 100 | Plus |
Fuca-RB | 1485 | CG6128-PB | 1..1485 | 17..1501 | 7425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 3514 | CG11714-RD | 1917..3401 | 17..1501 | 7425 | 100 | Plus |
Fuca-RC | 3513 | CG6128-RC | 1917..3401 | 17..1501 | 7425 | 100 | Plus |
Fuca-RB | 1675 | CG6128-RB | 79..1563 | 17..1501 | 7425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11519558..11520034 | 980..504 | 2385 | 100 | Minus |
3L | 28110227 | 3L | 11519079..11519496 | 1396..979 | 2090 | 100 | Minus |
3L | 28110227 | 3L | 11520509..11520746 | 254..17 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 11520294..11520435 | 396..255 | 710 | 100 | Minus |
3L | 28110227 | 3L | 11520106..11520214 | 503..395 | 545 | 100 | Minus |
3L | 28110227 | 3L | 11518910..11519016 | 1501..1395 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:47:17 has no hits.
BS18031.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:27 Download gff for
BS18031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 1..1485 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:37 Download gff for
BS18031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 1917..3401 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:43 Download gff for
BS18031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 79..1563 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:28 Download gff for
BS18031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 1912..3401 | 10..1501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:46 Download gff for
BS18031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 79..1563 | 17..1501 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:46 Download gff for
BS18031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11518910..11519014 | 1397..1501 | 100 | <- | Minus |
3L | 11519079..11519494 | 981..1396 | 100 | <- | Minus |
3L | 11519558..11520034 | 504..980 | 100 | <- | Minus |
3L | 11520106..11520212 | 397..503 | 100 | <- | Minus |
3L | 11520294..11520435 | 255..396 | 100 | <- | Minus |
3L | 11520509..11520746 | 17..254 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:43 Download gff for
BS18031.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11512010..11512114 | 1397..1501 | 100 | <- | Minus |
arm_3L | 11512179..11512594 | 981..1396 | 100 | <- | Minus |
arm_3L | 11512658..11513134 | 504..980 | 100 | <- | Minus |
arm_3L | 11513206..11513312 | 397..503 | 100 | <- | Minus |
arm_3L | 11513394..11513535 | 255..396 | 100 | <- | Minus |
arm_3L | 11513609..11513846 | 17..254 | 100 | | Minus |
BS18031.3prime Sequence
644 bp (573 high quality bases) assembled on 2007-06-06
> BS18031.3prime
ATGGTCTAGAAAGCTTCTACGTTATAGTTATTTTAAAAGTCCAGGCATAG
TCAAGACCTCTTTTATCGATGTGATTTTTAGGTGGAAACACGATGTGTAG
CCGGTTATGATCAGCATTCCACTTAATTTTGGTATCCTCCATGCCCAACA
TGACAACCTCAGTGCTTTGCTCATTCAGAATATCTCCACCGGTGCCCATA
TCGATTCCAGTCAGCATTACATTTCGGAATATATTGATATCCTTGCCAAG
CGGATAGATATCCAGTTCATTGGTGTCGTACGGATACTCCAGCACAAATG
CGTATATGGTGATTTTTCCATTGGATGCCTCCTTTTGCCGCGTATACCAA
ACATTTCCATTGATGGTATCATTCTGATAAATCCAGGGTACACTGCCGTA
AATACCCTCGCCATTGAACTTCAGCCAGCGACCCATGTCCCTTAGACGCT
CCTCGAAAATGGGCAGTATGGTACCAAACTTGGTTGGTCCAACATTGATC
AGCACATTGCCATTACAGCTCACAGTGGTGATAATCTCTTTAATGACTTC
CTTGGAGGTCATAAAATCGGACAAAGAGACATCGAATCGCTGACCCCAGC
TGGTGCGATCCAGGGTGAAGGCATTTTCCCACTTGTGAGCTTGC
BS18031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6128-PA | 1485 | CG6128-RA | 858..1485 | 644..17 | 3140 | 100 | Minus |
CG6128-PB | 1485 | CG6128-RB | 858..1485 | 644..17 | 3140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 3514 | CG11714-RD | 2774..3401 | 644..17 | 3140 | 100 | Minus |
Fuca-RC | 3513 | CG6128-RC | 2774..3401 | 644..17 | 3140 | 100 | Minus |
Fuca-RB | 1675 | CG6128-RB | 936..1563 | 644..17 | 3140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11519079..11519496 | 122..539 | 2090 | 100 | Plus |
3L | 28110227 | 3L | 11518910..11519016 | 17..123 | 535 | 100 | Plus |
3L | 28110227 | 3L | 11519558..11519664 | 538..644 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:38:52 has no hits.
BS18031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:01:13 Download gff for
BS18031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6128-PB | 858..1485 | 17..644 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:53 Download gff for
BS18031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 936..1563 | 17..644 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:19 Download gff for
BS18031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 936..1563 | 17..644 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:19 Download gff for
BS18031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11518910..11519014 | 17..121 | 100 | <- | Plus |
3L | 11519079..11519494 | 122..537 | 100 | <- | Plus |
3L | 11519558..11519664 | 538..644 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:53 Download gff for
BS18031.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11512010..11512114 | 17..121 | 100 | <- | Plus |
arm_3L | 11512179..11512594 | 122..537 | 100 | <- | Plus |
arm_3L | 11512658..11512764 | 538..644 | 100 | | Plus |
BS18031.5prime Sequence
893 bp (773 high quality bases) assembled on 2007-06-06
> BS18031.5prime
GAAGTTATCAGTCGACATGGCAATCTCCGCTTGGATGCCGCTTCTGGTGG
CGCTGATCGTCGTGTGGATTTCGGCAGCGGAGGTCGACGCACAGGTGCCG
GGACCACGGACTCGATACCAACCCAACTGGGCCAGTTTGGACCAGAGACC
ATTGCCCCAATGGTACGACGATGCCAAGGTGGGCATCTTTCTGCACTACG
GCGTTTACTCGGTGCCCAGTTTTGGTTCCGAGTGGTTCTGGACCAACTGG
AAAAATCTTCGCAATCCAGAGTACGTCCAATTCATGCAGCGTAATTACAA
GCCCGACTTCACTTATCAGGAATTTGCCAGTCAATTCACAGCGGAGCTAT
TCAATGCCACCAAGTGGGCGTTACTTTTCAAAGATAGCGGAGCCAGATAT
GTTGTGCTCACCAGCAAACATCACGATGGCTTCACGCTGTGGCCCTCGAA
GAATAGCTACGGATGGAATTCCATGGATGTGGGACCCAAACGAGATATAG
TCAAGGAACTGGCTGCCGCAATTCGAAAGGAGTCCGATCTTCGTTTTGGA
CTCTATTATTCTCTATTCGAATGGTTCAACCCACTGTGGACCGATGACAA
ATTGCATCTGTTAATGCAACAGCACTTTGTGGAGCGAAAGGTGCGGCCGG
AGCAAATGGAACTGGTGCAGCAGTATCTGCCGGAGATCATCTGGTCCGAT
GGCGATTGGGAGGCTCCAGCGAAATACTGGCGCTCCGAGGAGTTCATCGC
CTGGCTATATAATGATAGTCCTGTAAGGGATACGGTGGTGACCAACGATC
GCTGGGGCTTCGGCACTGCGTGTATGCATGGTGACTTCTACAATTGTGCC
GATCGCTTTCATCCCGGTGTTCTGCAAGCTCACAAGTGGGAAA
BS18031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6128-PA | 1485 | CG6128-RA | 1..877 | 17..893 | 4335 | 99.7 | Plus |
CG6128-PB | 1485 | CG6128-RB | 1..877 | 17..893 | 4335 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 3514 | CG11714-RD | 1917..2793 | 17..893 | 4355 | 99.8 | Plus |
Fuca-RC | 3513 | CG6128-RC | 1917..2793 | 17..893 | 4355 | 99.8 | Plus |
Fuca-RB | 1675 | CG6128-RB | 79..955 | 17..893 | 4355 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:16:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11519645..11520034 | 893..504 | 1920 | 99.5 | Minus |
3L | 28110227 | 3L | 11520509..11520746 | 254..17 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 11520294..11520435 | 396..255 | 710 | 100 | Minus |
3L | 28110227 | 3L | 11520106..11520214 | 503..395 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:16:20 has no hits.
BS18031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:01:18 Download gff for
BS18031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6128-PB | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 01:07:54 Download gff for
BS18031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 74..952 | 10..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:06 Download gff for
BS18031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RB | 74..952 | 10..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:06 Download gff for
BS18031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11520106..11520212 | 397..503 | 100 | <- | Minus |
3L | 11520294..11520435 | 255..396 | 100 | <- | Minus |
3L | 11520509..11520751 | 10..254 | 98 | | Minus |
3L | 11519648..11520034 | 504..890 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 01:07:54 Download gff for
BS18031.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11512748..11513134 | 504..890 | 99 | <- | Minus |
arm_3L | 11513206..11513312 | 397..503 | 100 | <- | Minus |
arm_3L | 11513394..11513535 | 255..396 | 100 | <- | Minus |
arm_3L | 11513609..11513851 | 10..254 | 98 | | Minus |
BS18031.pep Sequence
Translation from 16 to 1500
> BS18031.pep
MAISAWMPLLVALIVVWISAAEVDAQVPGPRTRYQPNWASLDQRPLPQWY
DDAKVGIFLHYGVYSVPSFGSEWFWTNWKNLRNPEYVQFMQRNYKPDFTY
QEFASQFTAELFNATKWALLFKDSGARYVVLTSKHHDGFTLWPSKNSYGW
NSMDVGPKRDIVKELAAAIRKESDLRFGLYYSLFEWFNPLWTDDKLHLLM
QQHFVERKVRPEQMELVQQYLPEIIWSDGDWEAPAKYWRSEEFIAWLYND
SPVRDTVVTNDRWGFGTACMHGDFYNCADRFNPGVLQAHKWENAFTLDRT
SWGQRFDVSLSDFMTSKEVIKEIITTVSCNGNVLINVGPTKFGTILPIFE
ERLRDMGRWLKFNGEGIYGSVPWIYQNDTINGNVWYTRQKEASNGKITIY
AFVLEYPYDTNELDIYPLGKDINIFRNVMLTGIDMGTGGDILNEQSTEVV
MLGMEDTKIKWNADHNRLHIVFPPKNHIDKRGLDYAWTFKITIT*
BS18031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fuca-PC | 494 | CG6128-PC | 1..494 | 1..494 | 2719 | 100 | Plus |
Fuca-PB | 494 | CG6128-PB | 1..494 | 1..494 | 2719 | 100 | Plus |