Clone BS18037 Report

Search the DGRC for BS18037

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG4901-RA
Protein status:BS18037.pep: full length peptide match
Sequenced Size:2117

Clone Sequence Records

BS18037.3prime Sequence

830 bp (753 high quality bases) assembled on 2007-06-06

> BS18037.3prime
ATGGTCTAGAAAGCTTTCATCTTGTTGGTATGTTTTTAACAAACGGCACA
ACCTCCTTGATCCATTCGATGGATATTTCCGTGACTTGGCGTAGAAACGT
TTGCTCCGTCTGCACAATTTCGGTGAAGAGTATGTAGCTCGGCTTGTACT
TTCCGTGCAGAACGCTCGACGGATGGATTTTGGACCTGATGTTGCCGGAA
GCGGTTATGTAGAAGCCATCGCGTTGCAGAACGGCAATATTTTCAAAGAA
TCCATTTAAAATGCATTTCTTCAACATTTCAATGTCATCCGAGCTATTTA
GAGCCAAATGCAAGTGCTCGCTTATTTCCCTCAATTGTCGGCGAACATTT
CGTGCATAGGTTAAACTACGCAAATTTAAATAGTTGTCGTGACACCACAT
CTTTGGCTTTTCGCTTTTCAAAAACCCATTGAACACATTCAGCAGCGTCA
AATGATCACCATGCTTGGACTGAAACTTGGCGTGAGCTAGTGCAGCCATT
TCGTTTTTTTCGCTATTCGAGACGAAGACGTGATCGCTTGAGAGAACGGA
AACAAGGCTCAGGATCTCCTCCATGCAGCCGAACGATGAAGCAGTAAGCA
GTAGCTTTGAGTACTTGGGATCCAAGGGATACTGCACCATTTGCCGACCC
AGCGGTGTAATGTATGAGTCATCTCCAGTCTTAATAGCCCCCAGGGCATC
GAGGCTCTTATACGCACTGCGCAGTCCATCTTCAAGTGGCGGGTCTAGGA
AGTCGAAATTGTTGCAATCAATGTCCAGGGCGAGGAGCTGCAGCACCATT
GACGTTGGATTTGTTCTCANGATTTCTGGC

BS18037.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-PA 2085 CG4901-RA 1272..2085 830..17 4051 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-RA 2246 CG4901-RA 1409..2224 830..15 4069 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10212821..10213250 830..401 2139 99.8 Minus
2L 23513712 2L 10213312..10213699 402..15 1940 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:02:21 has no hits.

BS18037.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:01:54 Download gff for BS18037.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4901-PA 1272..2085 17..830 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:45:33 Download gff for BS18037.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 1409..2224 15..830 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:03 Download gff for BS18037.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 1409..2224 15..830 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:03 Download gff for BS18037.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10212821..10213250 401..830 99 -> Minus
2L 10213314..10213699 15..400 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:45:33 Download gff for BS18037.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10212821..10213250 401..830 99 -> Minus
arm_2L 10213314..10213699 15..400 100   Minus

BS18037.5prime Sequence

893 bp (715 high quality bases) assembled on 2007-06-06

> BS18037.5prime
GAAGTTATCAGTCGACATGGACTCCAAATACTTTGCAACCAGCAGAAACG
ATGCTGTAGGTCCATCGCCTGTGAAGTTCTCCTTCAAGCGGAAGTACGAT
GCCATGGCGAACAGTCCCATACTGGAGAAGAAACCCCATGTGGCCCAAAT
CAAGCAGACAATAGCTCCCATTCTGCTGACCAGCAAAAGAACCTCCATTG
AACAGCAGCAAAAATCACTGCCTGTCTTTAATTGCCGCCATCGAATCCTC
AAGGAACTGGAAGCGAACGACACCGTGCTAATCATGAGCGAGACGGGCTC
GGGCAAGACCACACAGATACCACAGTTCCTGCTGCTGGCTGGTTACGCCA
AGAACGGAATGATCGGAATCACCCAGCCGCGCAGAGTGGCGGCCATAACA
GTGGCACGTCGCGTGGCCCAGGAGTTGAACGGAACCATTGGCGACACGGT
GGGCTATACGGTGCGTTTCGAGGATGTCACCTCAAGGGCCACAAAGATTC
GATTCCTTACCGACGGCGTTTTGCTGCGCGAGTCCATTAAGGATCGACTA
CTGCTCAAATATTCTGTGATTATTCTGGACGAGGCTCACGAGCGAACCGT
GAACGCAGACCTACTATTCGGGATAGTCAAAGATGCTCAAAAGGAGAGGC
GTAAGCAAAAGTTGGCCAACCTAAAGGTAGTGGTTACATCTGCCACGATG
GATATCGATCACTTCGGAAATTACTTTAATTGCAAGGGCATGTACCTGGA
GGGACGGACGTATCCGGTCCGTGTGATGCACACCAAGGAGGAGCACGAAG
ATTACATCCACACCGTGCTGGTTACCCTCTTTCACATACACCGCACCACT
CCGAAAAAACACGACGTGTTGATATTCCTACCGGGGCAAGAGG

BS18037.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-PA 2085 CG4901-RA 1..877 17..893 4310 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-RA 2246 CG4901-RA 138..1014 17..893 4340 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10211422..10212263 17..858 4210 100 Plus
Blast to na_te.dros performed on 2015-02-05 14:05:12 has no hits.

BS18037.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:01:59 Download gff for BS18037.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4901-PA 1..877 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:40 Download gff for BS18037.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 138..1014 17..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:16:58 Download gff for BS18037.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 138..1014 17..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:16:58 Download gff for BS18037.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10211422..10212263 17..858 100 -> Plus
2L 10212327..10212361 859..893 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:40 Download gff for BS18037.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10211422..10212263 17..858 100 -> Plus
arm_2L 10212327..10212361 859..893 91   Plus

BS18037.complete Sequence

2117 bp assembled on 2009-12-07

GenBank Submission: KX801787

> BS18037.complete
GAAGTTATCAGTCGACATGGACTCCAAATACTTTGCAACCAGCAGAAACG
ATGCTGTAGGTCCATCGCCTGTGAAGTTCTCCTTCAAGCGGAAGTACGAT
GCCATGGCGAACAGTCCCATACTGGAGAAGAAACCCCATGTGGCCCAAAT
CAAGCAGACAATAGCTCCCATTCTGCTGACCAGCAAAAGAACCTCCATTG
AACAGCAGCAAAAATCACTGCCTGTCTTTAATTGCCGCCATCGAATCCTC
AAGGAACTGGAAGCGAACGACACCGTGCTAATCATGAGCGAGACGGGCTC
GGGCAAGACCACACAGATACCACAGTTCCTGCTGCTGGCTGGTTACGCCA
AGAACGGAATGATCGGAATCACCCAGCCGCGCAGAGTGGCGGCCATAACA
GTGGCACGTCGCGTGGCCCAGGAGTTGAACGGAACCATTGGCGACACGGT
GGGCTATACGGTGCGTTTCGAGGATGTCACCTCAAGGGCCACAAAGATTC
GATTCCTTACCGACGGCGTTTTGCTGCGCGAGTCCATTAAGGATCGACTA
CTGCTCAAATATTCTGTGATTATTCTGGACGAGGCTCACGAGCGAACCGT
GAACGCAGACCTACTATTCGGGATAGTCAAAGATGCTCAAAAGGAGAGGC
GTAAGCAAAAGTTGGCCAACCTAAAGGTAGTGGTTACATCTGCCACGATG
GATATCGATCACTTCGGAAATTACTTTAATTGCAAGGGCATGTACCTGGA
GGGACGGACGTATCCGGTCCGTGTGATGCACACCAAGGAGGAGCACGAAG
ATTACATCCACACCGTGCTGGTTACCCTCTTTCACATACACCGCACCACT
CCGAAAAACCACGACGTGTTGATATTCCTAACCGGGCAAGAGGAAATCGA
GTCATTGGCCCAACAAATACGCCAGCTTGCCAAGATTGACACGACTGGAA
CAACAGATCTCCGCGTATTCACGTTGTATGCTCAGCTATCGCAGGGCAAG
CAATTGGAGTGTTTTGTGCCGACACCGGCCAACGTACGCAAAGTAATCTT
GGCCACAAATATAGCAGAAACGTCGATCACCATACCGGGCATCCGTTGTG
TGATTGACTGTGGCTTTGTGAAGGAGAAATCGTTCAATACCGTCGACGGA
CTGGATGTCTTAAAGTCAGTTCGAATATCTAAGGCGCAAGCCTGGCAGAG
AGCTGGACGAGCAGGTCGCGATGCGGATGGAACCTGCTACAGGGCGTACA
CAAAAGCTGAAATGGACTCCTTTGCAGATGCAACTCAGCCAGAAATCCTG
AGAACAAATCCAACGTCAATGGTGCTGCAGCTCCTCGCCCTGGACATTGA
TTGCAACAATTTCGACTTCCTAGACCCGCCACTTGAAGATGGACTGCGCA
GTGCGTATAAGAGCCTCGATGCCCTGGGGGCTATTAAGACTGGAGATGAC
TCATACATTACACCGCTGGGTCGGCAAATGGTGCAGTATCCCTTGGATCC
CAAGTACTCAAAGCTACTGCTTACTGCTTCATCGTTCGGCTGCATGGAGG
AGATCCTGAGCCTTGTTTCCGTTCTCTCAAGCGATCACGTCTTCGTCTCG
AATAGCGAAAAAAACGAAATGGCTGCACTAGCTCACGCCAAGTTTCAGTC
CAAGCATGGTGATCATTTGACGCTGCTGAATGTGTTCAATGGGTTTTTGA
AAAGCGAAAAGCCAAAGATGTGGTGTCACGACAACTATTTAAATTTGCGT
AGTTTAACCTATGCACGAAATGTTCGCCGACAATTGAGGGAAATAAGCGA
GCACTTGCATTTGGCTCTAAATAGCTCGGATGACATTGAAATGTTGAAGA
AATGCATTTTAAATGGATTCTTTGAAAATATTGCCGTTCTGCAACGCGAT
GGCTTCTACATAACCGCTTCCGGCAACATCAGGTCCAAAATCCATCCGTC
GAGCGTTCTGCACGGAAAGTACAAGCCGAGCTACATACTCTTCACCGAAA
TTGTGCAGACGGAGCAAACGTTTCTACGCCAAGTCACGGAAATATCCATC
GAATGGATCAAGGAGGTTGTGCCGTTTGTTAAAAACATACCAACAAGATG
AAAGCTTTCTAGACCAT

BS18037.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-RA 2085 CG4901-PA 1..2085 17..2101 10425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-RA 2246 CG4901-RA 138..2224 17..2103 10435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10211422..10212263 17..858 4210 100 Plus
2L 23513712 2L 10212466..10213250 933..1717 3925 100 Plus
2L 23513712 2L 10213312..10213699 1716..2103 1940 100 Plus
2L 23513712 2L 10212327..10212402 859..934 380 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:41:45 has no hits.

BS18037.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:51 Download gff for BS18037.complete
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 1..2085 17..2101 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:34 Download gff for BS18037.complete
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 125..2208 17..2100 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:58 Download gff for BS18037.complete
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 138..2221 17..2100 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:18:51 Download gff for BS18037.complete
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 125..2211 17..2103 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:42 Download gff for BS18037.complete
Subject Subject Range Query Range Percent Splice Strand
CG4901-RA 138..2221 17..2100 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:42 Download gff for BS18037.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10211422..10212263 17..858 100 -> Plus
2L 10212327..10212402 859..934 100 -> Plus
2L 10212468..10213250 935..1717 100 -> Plus
2L 10213314..10213696 1718..2100 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:58 Download gff for BS18037.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10211422..10212263 17..858 100 -> Plus
arm_2L 10212327..10212402 859..934 100 -> Plus
arm_2L 10212468..10213250 935..1717 100 -> Plus
arm_2L 10213314..10213696 1718..2100 100   Plus

BS18037.pep Sequence

Translation from 16 to 2100

> BS18037.pep
MDSKYFATSRNDAVGPSPVKFSFKRKYDAMANSPILEKKPHVAQIKQTIA
PILLTSKRTSIEQQQKSLPVFNCRHRILKELEANDTVLIMSETGSGKTTQ
IPQFLLLAGYAKNGMIGITQPRRVAAITVARRVAQELNGTIGDTVGYTVR
FEDVTSRATKIRFLTDGVLLRESIKDRLLLKYSVIILDEAHERTVNADLL
FGIVKDAQKERRKQKLANLKVVVTSATMDIDHFGNYFNCKGMYLEGRTYP
VRVMHTKEEHEDYIHTVLVTLFHIHRTTPKNHDVLIFLTGQEEIESLAQQ
IRQLAKIDTTGTTDLRVFTLYAQLSQGKQLECFVPTPANVRKVILATNIA
ETSITIPGIRCVIDCGFVKEKSFNTVDGLDVLKSVRISKAQAWQRAGRAG
RDADGTCYRAYTKAEMDSFADATQPEILRTNPTSMVLQLLALDIDCNNFD
FLDPPLEDGLRSAYKSLDALGAIKTGDDSYITPLGRQMVQYPLDPKYSKL
LLTASSFGCMEEILSLVSVLSSDHVFVSNSEKNEMAALAHAKFQSKHGDH
LTLLNVFNGFLKSEKPKMWCHDNYLNLRSLTYARNVRRQLREISEHLHLA
LNSSDDIEMLKKCILNGFFENIAVLQRDGFYITASGNIRSKIHPSSVLHG
KYKPSYILFTEIVQTEQTFLRQVTEISIEWIKEVVPFVKNIPTR*

BS18037.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4901-PA 694 CG4901-PA 1..694 1..694 3548 100 Plus
pea-PA 1242 CG8241-PA 578..1199 60..686 1217 42 Plus
l(2)37Cb-PA 894 CG10689-PA 241..867 57..686 1201 41.8 Plus
CG11107-PB 729 CG11107-PB 64..696 60..686 1176 40.4 Plus
CG11107-PA 729 CG11107-PA 64..696 60..686 1176 40.4 Plus