Clone Sequence Records
BS18038.complete Sequence
1316 bp assembled on 2009-12-08
GenBank Submission: KX802125
> BS18038.complete
GAAGTTATCAGTCGACATGAGTCTTAATTACGAACAAAACGCGGCAGACG
AGCAGTTCGCCCGCGCACACAAAGCAGTCAGCCTGTCGGACGACGAGGAG
AGCGAGGGCCAAGCGGAGACCACGTCTGCACCAAATCAGGAGCCGCATGT
TAGTAAATCACCGAGGGAGTACTACGATGAGCCTGGCGGGAAGGGCAATG
GAAGTGGAGCAGATGATCAGGATGAGCCGGAAACGGAGGCTGCCAGCGGA
GCGGCCAACACACATGTGGTGGCACACCACTACAACGAGCTGAAGGAGGC
GGGCCGCAAGGATCGTCAGAAGTCAAAGATATTCTTCATGAGGAACTTTA
ACAACTGGATCAAGAGCCAGCTGATCAACGAGTATATGTCGCAGATTAAG
CAGAACAAACGCATGGGTGATGCTCTCAGAGTTCTGGACATGTGCTGCGG
CAAGGGCGGTGACCTTCTCAAATGGGAGAAGGCTGCCATCTCCCACCTCA
TCTGCACCGACATCGCTGAGGTGTCGGTGGAGCAGTGCCAGCGGCGATAT
CAGGACATCCTGCAGCGATCGGAGAAGTCGAAATTTGCGAATAAGTTTAC
CGCGGAGTTTTTTGCCTGCGACTCCACATTAGTGCGCCTGCGGGAACGGT
ATAAGGATCCTTCGCTTCAGCTGAATCTCGTGTCCTGTCAGTTTGCCTTT
CACTATTGCTTCGAGTCAATGGCGCAGGCAGATTGCATGATGCGGAATGC
AGCCGAGTGTCTGAAACCCGGTGGCTTCTTCATAGCCACAATGCCGGATG
CCTACGAGATCATCCGCAGGCTAAGGGCAGCCGGTCCAGATGCCCGGCGT
TTCGGTAACGATGTGTACAGCATTGAATTTGACTGCGAAACGGATCCTTT
GCCGCTTTTCGGAGCCAAGTATCAGTTTCACTTGGAGGGCGTTGTCGATT
GCCCCGAGTTCCTAGTGCATTTTCCCACGCTGGTCAAGCTGGGCAGAAAA
TACGGTCTGCAGCTATTGAAGCGCTCCACATTTGCGGATTACTACAAGGA
AAATCTGCACCACGGGCGGCATCTTCTGCAGCGAATGTCCGGCTTGGAGT
CGGTGCAGCCACAGCGCTGCGAGAATGATGAAGAGTTCGCCCATGTGAGT
AACTTTCAGGGAGCACAGCGAAGCAGGTCGGTGGGAACCCTCTCGAAATC
CGAATGGGAAGCAGCAACTCTTTATTTGGTTTGTGCCTTTAAGAAATGCA
AAAACACCTGGGACACCAATGGCAAACCATTGTTCGAATTTGACGACTGA
AAGCTTTCTAGACCAT
BS18038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Bd-RA | 1284 | CG3688-PA | 1..1284 | 17..1300 | 6420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Bd-RA | 1769 | CG3688-RA | 80..1363 | 17..1300 | 6420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15010018..15011218 | 17..1217 | 6005 | 100 | Plus |
| 2L | 23513712 | 2L | 15011276..15011358 | 1218..1300 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:27:28 has no hits.
BS18038.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:13 Download gff for
BS18038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 78..1360 | 17..1299 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:37 Download gff for
BS18038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 80..1362 | 17..1299 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:21 Download gff for
BS18038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 78..1360 | 17..1299 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:49 Download gff for
BS18038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 80..1362 | 17..1299 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:49 Download gff for
BS18038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15010018..15011218 | 17..1217 | 100 | -> | Plus |
| 2L | 15011276..15011357 | 1218..1299 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:37 Download gff for
BS18038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15010018..15011218 | 17..1217 | 100 | -> | Plus |
| arm_2L | 15011276..15011357 | 1218..1299 | 100 | | Plus |
BS18038.3prime Sequence
916 bp (812 high quality bases) assembled on 2007-06-06
> BS18038.3prime
ATGGTCTAGAAAGCTTTCACCCTTCAAATTCGAACAATGGTTTGCCATTG
GTGTCCCAGGTGTTTTTGCATTTCTTAAAGGCACAAACCAAATAAAGAGT
TGCTGCTTCCCATTCGGATTTCGAGAGGGTTCCCACCGACCTGCTTCGCT
GTGCTCCCTGAAAGTTACTCACATGGGCGAACTCTTCATCATTCTCGCAG
CGCTGTGGCTGCACCGACTCCAAGCCGGACATTCGCTGCAGAAGATGCCG
CCCGTGGTGCAGATTTTCCTTGTAGTAATCCGCAAATGTGGAGCGCTTCA
ATAGCTGCAGACCGTATTTTCTGCCCAGCTTGACCAGCGTGGGAAAATGC
ACTAGGAACTCGGGGCAATCGACAACGCCCTCCAAGTGAAACTGATACTT
GGCTCCGAAAAGCGGCAAAGGATCCGTTTCGCAGTCAAATTCAATGCTGT
ACACATCGTTACCGAAACGCCGGGCATCTGGACCGGCTGCCCTTAGCCTG
CGGATGATCTCGTAGGCATCCGGCATTGTGGCTATGAAGAAGCCACCGGG
TTTCAGACACTCGGCTGCATTCCGCATCATGCAATCTGCCTGCGCCATTG
ACTCGAAGCAATAGTGAAAGGCAAACTGACAGGACACGAGATTCAGCTGA
AGCGAAGGATCCTTATACCGTTCCCGCAGGCGCACTAATGTGGAGTCGCA
GGCAAAAAACTCCGCGGTAAACTTATTCGCAAATTTCGACTTCTCCGATC
GCTGCAGGATGTCCTGATATCGCCGCTGGCACTGCTCCACCGACACCTCA
GCGATGTCGGTGCAGATGAGGTGGGAGATGGCAGCCTTCTCCCATTTGAG
AANGTCACCGCCCTTGCCGCAGCACATGTCCAGAACTCTGAGAGCATCAC
CCATGCGTTTGTTCTG
BS18038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3688-PA | 1284 | l(2)35Bd-RA | 385..1277 | 916..24 | 4446 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Bd-RA | 1769 | CG3688-RA | 464..1356 | 916..24 | 4454 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15010402..15011218 | 916..100 | 4074 | 99.9 | Minus |
| 2L | 23513712 | 2L | 15011276..15011351 | 99..24 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:29:28 has no hits.
BS18038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:03 Download gff for
BS18038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3688-PA | 385..1284 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:34 Download gff for
BS18038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 464..1363 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:03 Download gff for
BS18038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 464..1363 | 17..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:03 Download gff for
BS18038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15010402..15011218 | 100..916 | 99 | -> | Minus |
| 2L | 15011276..15011358 | 17..99 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:34 Download gff for
BS18038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15010402..15011218 | 100..916 | 99 | -> | Minus |
| arm_2L | 15011276..15011358 | 17..99 | 96 | | Minus |
BS18038.5prime Sequence
818 bp (724 high quality bases) assembled on 2007-06-06
> BS18038.5prime
GAAGTTATCAGTCGACATGAGTCTTAATTACGAACAAAACGCGGCAGACG
AGCAGTTCGCCCGCGCACACAAAGCAGTCAGCCTGTCGGACGACGAGGAG
AGCGAGGGCCAAGCGGAGACCACGTCTGCACCAAATCAGGAGCCGCATGT
TAGTAAATCACCGAGGGAGTACTACGATGAGCCTGGCGGGAAGGGCAATG
GAAGTGGAGCAGATGATCAGGATGAGCCGGAAACGGAGGCTGCCAGCGGA
GCGGCCAACACACATGTGGTGGCACACCACTACAACGAGCTGAAGGAGGC
GGGCCGCAAGGATCGTCAGAAGTCAAAGATATTCTTCATGAGGAACTTTA
ACAACTGGATCAAGAGCCAGCTGATCAACGAGTATATGTCGCAGATTAAG
CAGAACAAACGCATGGGTGATGCTCTCAGAGTTCTGGACATGTGCTGCGG
CAAGGGCGGTGACCTTCTCAAATGGGAGAAGGCTGCCATCTCCCACCTCA
TCTGCACCGACATCGCTGAGGTGTCGGTGGAGCAGTGCCAGCGGCGATAT
CAGGACATCCTGCAGCGATCGGAGAAGTCGAAATTTGCGAATAAGTTTAC
CGCGGAGTTTTTTGCCTGCGACTCCACATTAGTGCGCCTGCGGGAACGGT
ATAAGGATCCTTCGCTTCAGCTGAATCTCGTGTCCTGTCAGTTTGCCTTT
CACTATTGCTTCGAGTCAATGGCGCAGGCAGATTGCATGATGCGGAATGC
AGCCGAGTGTCTGAAACCCGGTGGCTTCTTCATAGCCACAATGCCGGATG
CCTACGAGATCATCCGCA
BS18038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3688-PA | 1284 | l(2)35Bd-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Bd-RA | 1769 | CG3688-RA | 80..881 | 17..818 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15010018..15010819 | 17..818 | 4010 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:32:08 has no hits.
BS18038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:08 Download gff for
BS18038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3688-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:58 Download gff for
BS18038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 71..880 | 7..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:12 Download gff for
BS18038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Bd-RA | 71..880 | 7..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:12 Download gff for
BS18038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15010009..15010818 | 7..817 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:58 Download gff for
BS18038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15010009..15010818 | 7..817 | 99 | | Plus |
BS18038.pep Sequence
Translation from 16 to 1299
> BS18038.pep
MSLNYEQNAADEQFARAHKAVSLSDDEESEGQAETTSAPNQEPHVSKSPR
EYYDEPGGKGNGSGADDQDEPETEAASGAANTHVVAHHYNELKEAGRKDR
QKSKIFFMRNFNNWIKSQLINEYMSQIKQNKRMGDALRVLDMCCGKGGDL
LKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTAEFFA
CDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLK
PGGFFIATMPDAYEIIRRLRAAGPDARRFGNDVYSIEFDCETDPLPLFGA
KYQFHLEGVVDCPEFLVHFPTLVKLGRKYGLQLLKRSTFADYYKENLHHG
RHLLQRMSGLESVQPQRCENDEEFAHVSNFQGAQRSRSVGTLSKSEWEAA
TLYLVCAFKKCKNTWDTNGKPLFEFDD*
BS18038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Bd-PA | 427 | CG3688-PA | 1..427 | 1..427 | 2280 | 100 | Plus |
