Clone Sequence Records
BS18041.3prime Sequence
823 bp (750 high quality bases) assembled on 2007-06-06
> BS18041.3prime
ATGGTCTAGAAAGCTTTTACAAGGTGAACCACATGAGGAATTGCAGCAAC
TTGTAGACGTTTACGAGCGGTAACTTCCAATGGCTTTTCCTTTGTAGCGG
TGGCACCAGGCTGGGATAGTGCACGAGGCTACCGATGTGGCAATTAGTAA
TGATAGTGCCACCAGGAACACCAACGGGCACAGCATCGCCCTGCTTGATA
CCATCGCAGTCGATGAGCTCCAGGGATTTGCTAAAGCAAATGCGAATCTC
CGATAGATAGCTGATGCCGTGTTTGCCATCGTACAGGCAGTGGATGGACG
GATTCTTCCCTAGTGCCTTGACTATCGCATTATTGATGGCCGCCACCGTA
TTGTTGGAATCGGGATGGATGTCCGAGGCGTCTAGAATGCGCGACATGAT
GTACTCCTCACGCCAAGTGAGCCCCTGCTCGAAGTACTTGAGTTCGTTGT
CCAGTTCCTCCACCAGCATGGCGCATGTTCCGTGCTTCTGCCACTCGTGT
TTCCAAAGCCACTCCGTGGAGTCCATGCCTTTGAGATCCGGCCAAAAGGT
CTCCAGTCGATCCTCAATGGGATTCAGTTTGCTTGGATCAAAGTTGGCCG
AGTTATTGCAGAAATTCGGTCCCATTTGGTGCAGTTTCGTTGGCCAGATG
CCGTGAATGGTCCAGAACTCCTTCTTCTGGGGCAGACTGCACTCCTGGTC
GGGATTCTCCTCGCGCCAATGATAGCAAGTGGTCACCGGCCATTGTTGCG
TGAAAATCAGCACATCCCAGTTGTGATCCTGCACAGACATCTCCCTCGAC
GAGTCTTGCAGAGAATCATCATC
BS18041.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8194-PA | 978 | RNaseX25-RA | 172..978 | 823..17 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RNaseX25-RA | 1663 | CG8194-RA | 253..1060 | 823..16 | 4040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7971039..7971846 | 823..16 | 4040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:02:37 has no hits.
BS18041.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:24 Download gff for
BS18041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8194-PA | 172..978 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:45:40 Download gff for
BS18041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RNaseX25-RA | 253..1060 | 16..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:10 Download gff for
BS18041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RNaseX25-RA | 253..1060 | 16..823 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:10 Download gff for
BS18041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7971039..7971846 | 16..823 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:45:40 Download gff for
BS18041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7964139..7964946 | 16..823 | 100 | | Minus |
BS18041.5prime Sequence
905 bp (778 high quality bases) assembled on 2007-06-06
> BS18041.5prime
GAAGTTATCAGTCGACATGCAGGAACTCGATATATCGATACCATCTACGG
ATTTTGCATCGCAGTTATTATTATTATTTTTTTACAACAAAATGCAGAGC
CAGCGGTTTCTATTCGTGGCCATTTTGGCCTGTTTTCTGGTGACTATCAA
ATCCACGCCCCTCAGCGACATATCGTATTCGGATGAATCGACTTCGGTGA
ATGAGAAGACACAGAAACGTCCAGACGATGACAGTGAATTCGATGGTTTC
CCCTTTCGGGAAGATGATGATTCTCTGCAAGACTCGTCGAGGGAGATGTC
TGTGCAGGATCACAACTGGGATGTGCTGATTTTCACGCAACAATGGCCGG
TGACCACTTGCTATCATTGGCGCGAGGAGAATCCCGACCAGGAGTGCAGT
CTGCCCCAGAAGAAGGAGTTCTGGACCATTCACGGCATCTGGCCAACGAA
ACTGCACCAAATGGGACCGAATTTCTGCAATAACTCGGCCAACTTTGATC
CAAGCAAACTGAATCCCATTGAGGATCGACTGGAGACCTTTTGGCCGGAT
CTCAAAGGCATGGACTCCACGGAGTGGCTTTGGAAACACGAGTGGCAGAA
GCACGGAACATGCGCCATGCTGGTGGAGGAACTGGACAACGAACTCAAGT
ACTTCGAGCAGGGGCTCACTTGGCGTGAGGAGTACATCATGTCGCGCATT
CTAGACGCCTCGGACATCCATCCCGATTCCAACAATACGGTGGCGGCCAT
CAATAATGCGATAGTCAAGGCACTANGGAAGAATCCGTCCATCCACTGCC
TGTACGATGGCAAACACGGCATCAGCTATCTATCGGAGATTCGCATTTGC
TTTTAGCAATCCCTGGAGCTCATCGACTGCGATGGTATCAAGCAGGGCGA
TGCTG
BS18041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8194-PA | 978 | RNaseX25-RA | 1..762 | 92..853 | 3791 | 99.8 | Plus |
| CG8194-PA | 978 | RNaseX25-RA | 767..814 | 858..905 | 240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RNaseX25-RA | 1663 | CG8194-RA | 2..895 | 12..905 | 4384 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7970939..7971681 | 163..905 | 3644 | 99.3 | Plus |
| 3L | 28110227 | 3L | 7970589..7970742 | 12..165 | 740 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:48:41 has no hits.
BS18041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:29 Download gff for
BS18041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8194-PA | 1..814 | 92..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 00:03:58 Download gff for
BS18041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RNaseX25-RA | 2..895 | 12..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:46 Download gff for
BS18041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RNaseX25-RA | 2..895 | 12..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:46 Download gff for
BS18041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7970580..7970742 | 1..165 | 95 | -> | Plus |
| 3L | 7970942..7971681 | 166..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 00:03:58 Download gff for
BS18041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7963680..7963842 | 1..165 | 95 | -> | Plus |
| arm_3L | 7964042..7964781 | 166..905 | 99 | | Plus |
BS18041.complete Sequence
1085 bp assembled on 2012-04-25
GenBank Submission: KX805449
> BS18041.complete
GAAGTTATCAGTCGACATGCAGGAACTCGATATATCGATACCATCTACGG
ATTTTGCATCGCAGTTATTATTATTATTTTTTTACAACAAAATGCAGAGC
CAGCGGTTTCTATTCGTGGCCATTTTGGCCTGTTTTCTGGTGACTATCAA
ATCCACGCCCCTCAGCGACATATCGTATTCGGATGAATCGACTTCGGTGA
ATGAGAAGACACAGAAACGTCCAGACGATGACAGTGAATTCGATGGTTTC
CCCTTTCGGGAAGATGATGATTCTCTGCAAGACTCGTCGAGGGAGATGTC
TGTGCAGGATCACAACTGGGATGTGCTGATTTTCACGCAACAATGGCCGG
TGACCACTTGCTATCATTGGCGCGAGGAGAATCCCGACCAGGAGTGCAGT
CTGCCCCAGAAGAAGGAGTTCTGGACCATTCACGGCATCTGGCCAACGAA
ACTGCACCAAATGGGACCGAATTTCTGCAATAACTCGGCCAACTTTGATC
CAAGCAAACTGAATCCCATTGAGGATCGACTGGAGACCTTTTGGCCGGAT
CTCAAAGGCATGGACTCCACGGAGTGGCTTTGGAAACACGAGTGGCAGAA
GCACGGAACATGCGCCATGCTGGTGGAGGAACTGGACAACGAACTCAAGT
ACTTCGAGCAGGGGCTCACTTGGCGTGAGGAGTACATCATGTCGCGCATT
CTAGACGCCTCGGACATCCATCCCGATTCCAACAATACGGTGGCGGCCAT
CAATAATGCGATAGTCAAGGCACTAGGGAAGAATCCGTCCATCCACTGCC
TGTACGATGGCAAACACGGCATCAGCTATCTATCGGAGATTCGCATTTGC
TTTAGCAAATCCCTGGAGCTCATCGACTGCGATGGTATCAAGCAGGGCGA
TGCTGTGCCCGTTGGTGTTCCTGGTGGCACTATCATTACTAATTGCCACA
TCGGTAGCCTCGTGCACTATCCCAGCCTGGTGCCACCGCTACAAAGGAAA
AGCCATTGGAAGTTACCGCTCGTAAACGTCTACAAGTTGCTGCAATTCCT
CATGTGGTTCACCTTGTAAAAGCTTTCTAGACCAT
BS18041.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RNaseX25-RA | 978 | CG8194-PA | 1..978 | 92..1069 | 4890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RNaseX25-RA | 1663 | CG8194-RA | 2..1060 | 12..1070 | 5265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7970939..7971846 | 163..1070 | 4540 | 100 | Plus |
| 3L | 28110227 | 3L | 7970589..7970742 | 12..165 | 740 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:01:53 has no hits.
BS18041.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:29 Download gff for
BS18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RNaseX25-RA | 1..978 | 92..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:58:01 Download gff for
BS18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RNaseX25-RA | 1..1055 | 16..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:12 Download gff for
BS18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RNaseX25-RA | 2..1052 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:38 Download gff for
BS18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RNaseX25-RA | 7..1057 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:29 Download gff for
BS18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RNaseX25-RA | 1..1055 | 16..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:49 Download gff for
BS18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RNaseX25-RA | 7..1057 | 17..1067 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:49 Download gff for
BS18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7970594..7970742 | 17..165 | 98 | -> | Plus |
| 3L | 7970942..7971843 | 166..1067 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:38 Download gff for
BS18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7964042..7964943 | 166..1067 | 100 | | Plus |
| arm_3L | 7963694..7963842 | 17..165 | 98 | -> | Plus |
BS18041.pep Sequence
Translation from 16 to 1068
> BS18041.pep
MQELDISIPSTDFASQLLLLFFYNKMQSQRFLFVAILACFLVTIKSTPLS
DISYSDESTSVNEKTQKRPDDDSEFDGFPFREDDDSLQDSSREMSVQDHN
WDVLIFTQQWPVTTCYHWREENPDQECSLPQKKEFWTIHGIWPTKLHQMG
PNFCNNSANFDPSKLNPIEDRLETFWPDLKGMDSTEWLWKHEWQKHGTCA
MLVEELDNELKYFEQGLTWREEYIMSRILDASDIHPDSNNTVAAINNAIV
KALGKNPSIHCLYDGKHGISYLSEIRICFSKSLELIDCDGIKQGDAVPVG
VPGGTIITNCHIGSLVHYPSLVPPLQRKSHWKLPLVNVYKLLQFLMWFTL
*
BS18041.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RNaseX25-PA | 325 | CG8194-PA | 1..325 | 26..350 | 1789 | 100 | Plus |
