Clone Sequence Records
BS18042.complete Sequence
1076 bp assembled on 2010-02-09
GenBank Submission: KX801412
> BS18042.complete
GAAGTTATCAGTCGACATGGCGGCAGGTCCAATTGCTGAACGCAACCAAG
ATGCCACCATCTATGCCGGCGGTCTTGACGACAAGGTGTCGGAAACGCTG
CTTTGGGAGCTGTTTGTCCAGGCAGGACCAGTGGTGAACGTACACATGCC
CAAGGATCGTGTCACCCAAATGCACCAGGGCTATGGATTCGTCGAGTTCC
TCAGCGAGGAAGACGCCGACTATGGAATAAAGATCATGAACATGATCAAG
CTTTACGGCAAGCCCATTCGCGTGAACAAGGCGTCGGCGCATCAGAAGAA
CCTGGACGTCGGCGCCAACATCTTCATTGGCAACCTAGACGTGGAAGTGG
ACGAGAAGCTGCTGTACGATACGTTCTCCGCCTTCGGCGTTATACTGCAG
ACGCCGAAGATCATGCGAGACCCAGAGACGGGCAAGTCTAAGAGCTTTGC
GTTCATCAACTTTGCCAGCTTCGAGGCCAGCGATGCGGCCATGGACGCCA
TGAACGGCCAGTACCTGTGCAACCGTCCCATTTCCGTGTCCTATGCCTTC
AAGAAGGATCACAAGGGCGAGCGTCACGGTTCGGCTGCGGAGCGCCTGTT
GGCCGCCCAGAATCCATCGACCCATGCAGACCGGCCGCATCAATTGTTCG
CCGATGCACCGGTGCAAACCATGATGCCCCAGATGCCGGGCCAGATCCCG
GCCCAGATGCCGGGCCAGATGATGCCGCCACCCATGATGGCGCCGCCGCC
GCCGGTGGTGCCCGTTTCGAATAACAATATGGGCATGCTAGCACCGCCGC
CGCCCGTTCCCCAGCCTGCACCGTTCCCAGCTACGATACCGCCGCCTCCG
TTGCCACCGATGACCGGCGGACAGCCGCCGCTGCCGCCAGCAATGGGCAT
TCCGCCGCCGCCTCGCATGATGCAACCAAATGCATGGGCACCGCCCGGCA
TGCCTGCTCCTCCGCCCAGACCACCGCCCACCAACTGGCGTCCGCCGCCC
GTGCCCTTCCCACCCACGCCCTACGCACGGCCCTATCAACCCGACGGCTA
CCAGTACTAAAAGCTTTCTAGACCAT
BS18042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spx-RA | 1044 | CG3780-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spx-RA | 1643 | CG3780-RA | 86..1133 | 13..1060 | 5225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6256160..6257086 | 134..1060 | 4635 | 100 | Plus |
X | 23542271 | X | 6256017..6256102 | 49..134 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:36:21 has no hits.
BS18042.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:14 Download gff for
BS18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 1..1044 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:27 Download gff for
BS18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 79..1120 | 17..1058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:22 Download gff for
BS18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 90..1131 | 17..1058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:14 Download gff for
BS18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 68..1122 | 7..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:42 Download gff for
BS18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 90..1131 | 17..1058 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:42 Download gff for
BS18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6255911..6255944 | 17..50 | 100 | -> | Plus |
X | 6256019..6256102 | 51..134 | 100 | -> | Plus |
X | 6256161..6257084 | 135..1058 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:22 Download gff for
BS18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6149944..6149977 | 17..50 | 100 | -> | Plus |
arm_X | 6150052..6150135 | 51..134 | 100 | -> | Plus |
arm_X | 6150194..6151117 | 135..1058 | 100 | | Plus |
BS18042.3prime Sequence
866 bp (819 high quality bases) assembled on 2007-06-06
> BS18042.3prime
ATGGTCTAGAAAGCTTTTAGTACTGGTAGCCGTCGGGTTGATAGGGCCGT
GCGTAGGGCGTGGGTGGGAAGGGCACGGGCGGCGGACGCCAGTTGGTGGG
CGGTGGTCTGGGCGGAGGAGCAGGCATGCCGGGCGGTGCCCATGCATTTG
GTTGCATCATGCGAGGCGGCGGCGGAATGCCCATTGCTGGCGGCAGCGGC
GGCTGTCCGCCGGTCATCGGTGGCAACGGAGGCGGCGGTATCGTAGCTGG
GAACGGTGCAGGCTGGGGAACGGGCGGCGGCGGTGCTAGCATGCCCATAT
TGTTATTCGAAACGGGCACCACCGGCGGCGGCGGCGCCATCATGGGTGGC
GGCATCATCTGGCCCGGCATCTGGGCCGGGATCTGGCCCGGCATCTGGGG
CATCATGGTTTGCACCGGTGCATCGGCGAACAATTGATGCGGCCGGTCTG
CATGGGTCGATGGATTCTGGGCGGCCAACAGGCGCTCCGCAGCCGAACCG
TGACGCTCGCCCTTGTGATCCTTCTTGAAGGCATAGGACACGGAAATGGG
ACGGTTGCACAGGTACTGGCCGTTCATGGCGTCCATGGCCGCATCGCTGG
CCTCGAAGCTGGCAAAGTTGATGAACGCAAAGCTCTTAGACTTGCCCGTC
TCTGGGTCTCGCATGATCTTCGGCGTCTGCAGTATAACGCCGAAGGCGGA
GAACGTATCGTACAGCAGCTTCTCGTCCACTTCCACGTCTAGGTTGCCAA
TGAAGATGTTGGCGCCGACGTCCAGGTTCTTCTGATGCGCCGACGCCTTG
TTCACGCGAATGGGCTTGCCGTAAAGCTTGATCATGTTCATGATCTTTAT
TCCATAGTCGGCGTCT
BS18042.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3780-PA | 1044 | Spx-RA | 195..1044 | 866..17 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spx-RA | 1643 | CG3780-RA | 284..1133 | 866..17 | 4250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6256237..6257086 | 866..17 | 4250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:50:48 has no hits.
BS18042.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:33 Download gff for
BS18042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3780-PA | 195..1044 | 17..866 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:22:17 Download gff for
BS18042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 284..1133 | 17..866 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:31 Download gff for
BS18042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 284..1133 | 17..866 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:31 Download gff for
BS18042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6256237..6257086 | 17..866 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:22:17 Download gff for
BS18042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6150270..6151119 | 17..866 | 100 | | Minus |
BS18042.5prime Sequence
842 bp (766 high quality bases) assembled on 2007-06-06
> BS18042.5prime
GAAGTTATCAGTCGACATGGCGGCAGGTCCAATTGCTGAACGCAACCAAG
ATGCCACCATCTATGCCGGCGGTCTTGACGACAAGGTGTCGGAAACGCTG
CTTTGGGAGCTGTTTGTCCAGGCAGGACCAGTGGTGAACGTACACATGCC
CAAGGATCGTGTCACCCAAATGCACCAGGGCTATGGATTCGTCGAGTTCC
TCAGCGAGGAAGACGCCGACTATGGAATAAAGATCATGAACATGATCAAG
CTTTACGGCAAGCCCATTCGCGTGAACAAGGCGTCGGCGCATCAGAAGAA
CCTGGACGTCGGCGCCAACATCTTCATTGGCAACCTAGACGTGGAAGTGG
ACGAGAAGCTGCTGTACGATACGTTCTCCGCCTTCGGCGTTATACTGCAG
ACGCCGAAGATCATGCGAGACCCAGAGACGGGCAAGTCTAAGAGCTTTGC
GTTCATCAACTTTGCCAGCTTCGAGGCCAGCGATGCGGCCATGGACGCCA
TGAACGGCCAGTACCTGTGCAACCGTCCCATTTCCGTGTCCTATGCCTTC
AAGAAGGATCACAAGGGCGAGCGTCACGGTTCGGCTGCGGAGCGCCTGTT
GGCCGCCCAGAATCCATCGACCCATGCAGACCGGCCGCATCAATTGTTCG
CCGATGCACCGGTGCAAACCATGATGCCCCAGATGCCGGGCCAGATCCCG
GCCCAGATGCCGGGCCAGATGATGCCGCCACCCATGATGGCGCCGCCGCC
GCCGGTGGTGCCCGTTTCGAATAACAATATGGGCATGCTAGCACCGCCGC
CGCCCGTTCCCCAGCCTGCACCGTTCCCAGCTACGATACCGC
BS18042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3780-PA | 1044 | Spx-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spx-RA | 1643 | CG3780-RA | 86..915 | 13..842 | 4135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6256160..6256868 | 134..842 | 3545 | 100 | Plus |
X | 23542271 | X | 6256017..6256102 | 49..134 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:38:33 has no hits.
BS18042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:37 Download gff for
BS18042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3780-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:37 Download gff for
BS18042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 79..915 | 7..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:24 Download gff for
BS18042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spx-RA | 79..915 | 7..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:24 Download gff for
BS18042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6256019..6256102 | 51..134 | 100 | -> | Plus |
X | 6255900..6255944 | 7..50 | 91 | -> | Plus |
X | 6256161..6256868 | 135..842 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:37 Download gff for
BS18042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6149933..6149977 | 7..50 | 91 | -> | Plus |
arm_X | 6150052..6150135 | 51..134 | 100 | -> | Plus |
arm_X | 6150194..6150901 | 135..842 | 100 | | Plus |
BS18042.pep Sequence
Translation from 16 to 1059
> BS18042.pep
MAAGPIAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVT
QMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVGA
NIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFA
SFEASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNP
STHADRPHQLFADAPVQTMMPQMPGQIPAQMPGQMMPPPMMAPPPPVVPV
SNNNMGMLAPPPPVPQPAPFPATIPPPPLPPMTGGQPPLPPAMGIPPPPR
MMQPNAWAPPGMPAPPPRPPPTNWRPPPVPFPPTPYARPYQPDGYQY*
BS18042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spx-PA | 347 | CG3780-PA | 1..347 | 1..347 | 1896 | 100 | Plus |
Rb97D-PE | 434 | CG6354-PE | 25..392 | 6..346 | 268 | 28.8 | Plus |
Rb97D-PD | 434 | CG6354-PD | 25..392 | 6..346 | 268 | 28.8 | Plus |
Rb97D-PG | 465 | CG6354-PG | 25..392 | 6..346 | 268 | 28.8 | Plus |
Rb97D-PC | 465 | CG6354-PC | 25..392 | 6..346 | 268 | 28.8 | Plus |