Clone BS18042 Report

Search the DGRC for BS18042

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptSpx-RA
Protein status:BS18042.pep: full length peptide match
Sequenced Size:1076

Clone Sequence Records

BS18042.complete Sequence

1076 bp assembled on 2010-02-09

GenBank Submission: KX801412

> BS18042.complete
GAAGTTATCAGTCGACATGGCGGCAGGTCCAATTGCTGAACGCAACCAAG
ATGCCACCATCTATGCCGGCGGTCTTGACGACAAGGTGTCGGAAACGCTG
CTTTGGGAGCTGTTTGTCCAGGCAGGACCAGTGGTGAACGTACACATGCC
CAAGGATCGTGTCACCCAAATGCACCAGGGCTATGGATTCGTCGAGTTCC
TCAGCGAGGAAGACGCCGACTATGGAATAAAGATCATGAACATGATCAAG
CTTTACGGCAAGCCCATTCGCGTGAACAAGGCGTCGGCGCATCAGAAGAA
CCTGGACGTCGGCGCCAACATCTTCATTGGCAACCTAGACGTGGAAGTGG
ACGAGAAGCTGCTGTACGATACGTTCTCCGCCTTCGGCGTTATACTGCAG
ACGCCGAAGATCATGCGAGACCCAGAGACGGGCAAGTCTAAGAGCTTTGC
GTTCATCAACTTTGCCAGCTTCGAGGCCAGCGATGCGGCCATGGACGCCA
TGAACGGCCAGTACCTGTGCAACCGTCCCATTTCCGTGTCCTATGCCTTC
AAGAAGGATCACAAGGGCGAGCGTCACGGTTCGGCTGCGGAGCGCCTGTT
GGCCGCCCAGAATCCATCGACCCATGCAGACCGGCCGCATCAATTGTTCG
CCGATGCACCGGTGCAAACCATGATGCCCCAGATGCCGGGCCAGATCCCG
GCCCAGATGCCGGGCCAGATGATGCCGCCACCCATGATGGCGCCGCCGCC
GCCGGTGGTGCCCGTTTCGAATAACAATATGGGCATGCTAGCACCGCCGC
CGCCCGTTCCCCAGCCTGCACCGTTCCCAGCTACGATACCGCCGCCTCCG
TTGCCACCGATGACCGGCGGACAGCCGCCGCTGCCGCCAGCAATGGGCAT
TCCGCCGCCGCCTCGCATGATGCAACCAAATGCATGGGCACCGCCCGGCA
TGCCTGCTCCTCCGCCCAGACCACCGCCCACCAACTGGCGTCCGCCGCCC
GTGCCCTTCCCACCCACGCCCTACGCACGGCCCTATCAACCCGACGGCTA
CCAGTACTAAAAGCTTTCTAGACCAT

BS18042.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Spx-RA 1044 CG3780-PA 1..1044 17..1060 5220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Spx-RA 1643 CG3780-RA 86..1133 13..1060 5225 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6256160..6257086 134..1060 4635 100 Plus
X 23542271 X 6256017..6256102 49..134 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:36:21 has no hits.

BS18042.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:14 Download gff for BS18042.complete
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 1..1044 17..1060 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:27 Download gff for BS18042.complete
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 79..1120 17..1058 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:22 Download gff for BS18042.complete
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 90..1131 17..1058 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:14 Download gff for BS18042.complete
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 68..1122 7..1060 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:42 Download gff for BS18042.complete
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 90..1131 17..1058 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:42 Download gff for BS18042.complete
Subject Subject Range Query Range Percent Splice Strand
X 6255911..6255944 17..50 100 -> Plus
X 6256019..6256102 51..134 100 -> Plus
X 6256161..6257084 135..1058 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:22 Download gff for BS18042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6149944..6149977 17..50 100 -> Plus
arm_X 6150052..6150135 51..134 100 -> Plus
arm_X 6150194..6151117 135..1058 100   Plus

BS18042.3prime Sequence

866 bp (819 high quality bases) assembled on 2007-06-06

> BS18042.3prime
ATGGTCTAGAAAGCTTTTAGTACTGGTAGCCGTCGGGTTGATAGGGCCGT
GCGTAGGGCGTGGGTGGGAAGGGCACGGGCGGCGGACGCCAGTTGGTGGG
CGGTGGTCTGGGCGGAGGAGCAGGCATGCCGGGCGGTGCCCATGCATTTG
GTTGCATCATGCGAGGCGGCGGCGGAATGCCCATTGCTGGCGGCAGCGGC
GGCTGTCCGCCGGTCATCGGTGGCAACGGAGGCGGCGGTATCGTAGCTGG
GAACGGTGCAGGCTGGGGAACGGGCGGCGGCGGTGCTAGCATGCCCATAT
TGTTATTCGAAACGGGCACCACCGGCGGCGGCGGCGCCATCATGGGTGGC
GGCATCATCTGGCCCGGCATCTGGGCCGGGATCTGGCCCGGCATCTGGGG
CATCATGGTTTGCACCGGTGCATCGGCGAACAATTGATGCGGCCGGTCTG
CATGGGTCGATGGATTCTGGGCGGCCAACAGGCGCTCCGCAGCCGAACCG
TGACGCTCGCCCTTGTGATCCTTCTTGAAGGCATAGGACACGGAAATGGG
ACGGTTGCACAGGTACTGGCCGTTCATGGCGTCCATGGCCGCATCGCTGG
CCTCGAAGCTGGCAAAGTTGATGAACGCAAAGCTCTTAGACTTGCCCGTC
TCTGGGTCTCGCATGATCTTCGGCGTCTGCAGTATAACGCCGAAGGCGGA
GAACGTATCGTACAGCAGCTTCTCGTCCACTTCCACGTCTAGGTTGCCAA
TGAAGATGTTGGCGCCGACGTCCAGGTTCTTCTGATGCGCCGACGCCTTG
TTCACGCGAATGGGCTTGCCGTAAAGCTTGATCATGTTCATGATCTTTAT
TCCATAGTCGGCGTCT

BS18042.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3780-PA 1044 Spx-RA 195..1044 866..17 4250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
Spx-RA 1643 CG3780-RA 284..1133 866..17 4250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6256237..6257086 866..17 4250 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:50:48 has no hits.

BS18042.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:33 Download gff for BS18042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3780-PA 195..1044 17..866 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:22:17 Download gff for BS18042.3prime
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 284..1133 17..866 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:31 Download gff for BS18042.3prime
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 284..1133 17..866 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:31 Download gff for BS18042.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6256237..6257086 17..866 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:22:17 Download gff for BS18042.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6150270..6151119 17..866 100   Minus

BS18042.5prime Sequence

842 bp (766 high quality bases) assembled on 2007-06-06

> BS18042.5prime
GAAGTTATCAGTCGACATGGCGGCAGGTCCAATTGCTGAACGCAACCAAG
ATGCCACCATCTATGCCGGCGGTCTTGACGACAAGGTGTCGGAAACGCTG
CTTTGGGAGCTGTTTGTCCAGGCAGGACCAGTGGTGAACGTACACATGCC
CAAGGATCGTGTCACCCAAATGCACCAGGGCTATGGATTCGTCGAGTTCC
TCAGCGAGGAAGACGCCGACTATGGAATAAAGATCATGAACATGATCAAG
CTTTACGGCAAGCCCATTCGCGTGAACAAGGCGTCGGCGCATCAGAAGAA
CCTGGACGTCGGCGCCAACATCTTCATTGGCAACCTAGACGTGGAAGTGG
ACGAGAAGCTGCTGTACGATACGTTCTCCGCCTTCGGCGTTATACTGCAG
ACGCCGAAGATCATGCGAGACCCAGAGACGGGCAAGTCTAAGAGCTTTGC
GTTCATCAACTTTGCCAGCTTCGAGGCCAGCGATGCGGCCATGGACGCCA
TGAACGGCCAGTACCTGTGCAACCGTCCCATTTCCGTGTCCTATGCCTTC
AAGAAGGATCACAAGGGCGAGCGTCACGGTTCGGCTGCGGAGCGCCTGTT
GGCCGCCCAGAATCCATCGACCCATGCAGACCGGCCGCATCAATTGTTCG
CCGATGCACCGGTGCAAACCATGATGCCCCAGATGCCGGGCCAGATCCCG
GCCCAGATGCCGGGCCAGATGATGCCGCCACCCATGATGGCGCCGCCGCC
GCCGGTGGTGCCCGTTTCGAATAACAATATGGGCATGCTAGCACCGCCGC
CGCCCGTTCCCCAGCCTGCACCGTTCCCAGCTACGATACCGC

BS18042.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3780-PA 1044 Spx-RA 1..826 17..842 4130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Spx-RA 1643 CG3780-RA 86..915 13..842 4135 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6256160..6256868 134..842 3545 100 Plus
X 23542271 X 6256017..6256102 49..134 430 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:38:33 has no hits.

BS18042.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:37 Download gff for BS18042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3780-PA 1..826 17..842 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:53:37 Download gff for BS18042.5prime
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 79..915 7..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:24 Download gff for BS18042.5prime
Subject Subject Range Query Range Percent Splice Strand
Spx-RA 79..915 7..842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:24 Download gff for BS18042.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6256019..6256102 51..134 100 -> Plus
X 6255900..6255944 7..50 91 -> Plus
X 6256161..6256868 135..842 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:53:37 Download gff for BS18042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6149933..6149977 7..50 91 -> Plus
arm_X 6150052..6150135 51..134 100 -> Plus
arm_X 6150194..6150901 135..842 100   Plus

BS18042.pep Sequence

Translation from 16 to 1059

> BS18042.pep
MAAGPIAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVT
QMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVGA
NIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFA
SFEASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNP
STHADRPHQLFADAPVQTMMPQMPGQIPAQMPGQMMPPPMMAPPPPVVPV
SNNNMGMLAPPPPVPQPAPFPATIPPPPLPPMTGGQPPLPPAMGIPPPPR
MMQPNAWAPPGMPAPPPRPPPTNWRPPPVPFPPTPYARPYQPDGYQY*

BS18042.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
Spx-PA 347 CG3780-PA 1..347 1..347 1896 100 Plus
Rb97D-PE 434 CG6354-PE 25..392 6..346 268 28.8 Plus
Rb97D-PD 434 CG6354-PD 25..392 6..346 268 28.8 Plus
Rb97D-PG 465 CG6354-PG 25..392 6..346 268 28.8 Plus
Rb97D-PC 465 CG6354-PC 25..392 6..346 268 28.8 Plus