Clone Sequence Records
BS18044.complete Sequence
1112 bp assembled on 2010-02-09
GenBank Submission: KX802632
> BS18044.complete
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCCAGGAAAAC
TATCTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATC
GGCACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTAT
GCTCAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGG
ACAACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGC
GTTTATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAA
GGAGACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTG
TCAGGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTT
ATACAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAA
CCTGCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGG
ACGCAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATAC
AAAATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTG
GCAGGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATA
CTGCAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGG
ATTCCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGT
CCATCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGT
CTCATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAG
CTGGTCGTCTTCAACAGCGGCAATAGTTGGCGAGTGGCCGGAGTTCCAGT
GACGCCTGGCAGCTATCTGGGCCGCAAATTTCTGCCCACTCCTTGGCGCG
GACTGATGGACGATGAACTATGCGATAAGGCGAGCATCAAAGATCTCGAA
TTCATCCATCACACAGGATTTATTGGCGGGGCAAAAACCGAGGAGGCTGC
CATGTTGTTGGCCAAGAAATCCACCGAGTGGACAGAAGAGCAATAAAAGC
TTTCTAGACCAT
BS18044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RC | 1080 | CG11980-PC | 1..1080 | 17..1096 | 5400 | 100 | Plus |
CG11980-RB | 1077 | CG11980-PB | 1..1077 | 17..1096 | 5320 | 99.7 | Plus |
CG11980-RA | 1038 | CG11980-PA | 1..1038 | 59..1096 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RC | 1195 | CG11980-RC | 35..1114 | 17..1096 | 5400 | 100 | Plus |
CG11980-RB | 1192 | CG11980-RB | 35..1111 | 17..1096 | 5320 | 99.7 | Plus |
CG11980-RA | 1179 | CG11980-RA | 44..1098 | 42..1096 | 5275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9004506..9005250 | 352..1096 | 3725 | 100 | Plus |
3R | 32079331 | 3R | 9004139..9004452 | 42..355 | 1570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:26:03 has no hits.
BS18044.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:12 Download gff for
BS18044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RC | 27..1099 | 22..1094 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:18 Download gff for
BS18044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RC | 40..1112 | 22..1094 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:10 Download gff for
BS18044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RC | 27..1099 | 22..1094 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:41 Download gff for
BS18044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RC | 40..1112 | 22..1094 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:41 Download gff for
BS18044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9004056..9004075 | 22..41 | 100 | -> | Plus |
3R | 9004139..9004451 | 42..354 | 100 | -> | Plus |
3R | 9004509..9005248 | 355..1094 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:18 Download gff for
BS18044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4829778..4829797 | 22..41 | 100 | -> | Plus |
arm_3R | 4829861..4830173 | 42..354 | 100 | -> | Plus |
arm_3R | 4830231..4830970 | 355..1094 | 100 | | Plus |
BS18044.3prime Sequence
837 bp (755 high quality bases) assembled on 2007-06-06
> BS18044.3prime
CCCTTCAGGGGCGCCAAACGAATGGTCTAGAAAGCTTTTATTGCTCTTCT
GTCCACTCGGTGGATTTCTTGGCCAACAACATGGCAGCCTCCTCGGTTTT
TGCCCCGCCAATAAATCCTGTGTGATGGATGAATTCGAGATCTTTGATGC
TCGCCTTATCGCATAGTTCATCGTCCATCAGTCCGCGCCAAGGAGTGGGC
AGAAATTTGCGGCCCAGATAGCTGCCAGGCGTCACTGGAACTCCGGCCAC
TCGCCAACTATTGCCGCTGTTGAAGACGACCAGCTTGGGCACACCCTCCA
CCTTGTACTCCTTTTCAAGATCGAACAGATGAGACTTCCAGGGGCAGAAA
TTCTTCAACACAAGAATCTCGCCGGTGGGATGGACGTTCTTGGCATTTTT
AAGAGCCTCTCGTACGTGATCCCGGGCTGGAATCCAGGAACATGATACCT
CCACAACGTTGTCCACAAACTCACGACCTGCAGTATCCATCGCCTGTCTG
AATCGGTCTTCGATGTCTACGCCAGTTTCCTGCCAGGACGGATTCAGTTT
GGCAATGCGGGCAGATAGATGAGTGGAGATTTTGTATATAGGCTCAACGC
CCTCGAACATGGGCACTCCATTATCAATTGCGTCCAGTTCGTTGATAAAA
TTCCTATAGATCTGAATAAAGGCCGTTTGCAGGTTTTCCGGTGAGAGTTT
AATTCCCTTTTCGCGCTGCANGATGCTCTGTATAACACGCTCGCCATAGT
GACAGTAGACCAGTCCAGCACTGCTTAGCCTGACAACGTTGTAGTCCTCG
CTTACATCTGGGCGAACGGAACTAAAAGTCTCCTTGA
BS18044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-PB | 1077 | CG11980-RB | 278..1077 | 837..38 | 3981 | 99.8 | Minus |
CG11980-PC | 1080 | CG11980-RC | 281..1080 | 837..38 | 3981 | 99.8 | Minus |
CG11980-PA | 1038 | CG11980-RA | 239..1038 | 837..38 | 3981 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RA | 1179 | CG11980-RA | 299..1098 | 837..38 | 3989 | 99.9 | Minus |
CG11980-RC | 1195 | CG11980-RC | 315..1114 | 837..38 | 3989 | 99.9 | Minus |
CG11980-RB | 1192 | CG11980-RB | 312..1111 | 837..38 | 3989 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9004506..9005250 | 782..38 | 3714 | 99.9 | Minus |
3R | 32079331 | 3R | 9004394..9004452 | 837..779 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:32:20 has no hits.
BS18044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:43 Download gff for
BS18044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-PA | 240..1038 | 38..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:59 Download gff for
BS18044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 313..1111 | 38..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:14 Download gff for
BS18044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 313..1111 | 38..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:14 Download gff for
BS18044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9004395..9004451 | 780..836 | 100 | -> | Minus |
3R | 9004509..9005254 | 30..779 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:59 Download gff for
BS18044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4830117..4830173 | 780..836 | 100 | -> | Minus |
arm_3R | 4830231..4830976 | 30..779 | 99 | <- | Minus |
BS18044.5prime Sequence
862 bp (815 high quality bases) assembled on 2007-06-06
> BS18044.5prime
GAAGTTATCCCTCGACATGTTCCGATTGTTACCTCGTTTTCCAGGAAAAC
TATCTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATC
GGCACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTAT
GCTCAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGG
ACAACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGC
GTTTATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAA
GGAGACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTG
TCAGGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTT
ATACAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAA
CCTGCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGG
ACGCAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATAC
AAAATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTG
GCAGGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATA
CTGCAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGG
ATTCCAGCCCGGGATCACGTACGAGAGGCTCTTAAAATGCCAAGAACGTC
CATCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGTC
TCATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAGC
TGGTCGTCTTCA
BS18044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-PC | 1080 | CG11980-RC | 1..721 | 17..737 | 3605 | 100 | Plus |
CG11980-PB | 1077 | CG11980-RB | 26..718 | 45..737 | 3465 | 100 | Plus |
CG11980-PA | 1038 | CG11980-RA | 1..679 | 59..737 | 3395 | 100 | Plus |
CG11980-PC | 1080 | CG11980-RC | 719..847 | 734..862 | 645 | 100 | Plus |
CG11980-PB | 1077 | CG11980-RB | 716..844 | 734..862 | 645 | 100 | Plus |
CG11980-PA | 1038 | CG11980-RA | 677..805 | 734..862 | 645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RC | 1195 | CG11980-RC | 35..881 | 17..862 | 4210 | 99.9 | Plus |
CG11980-RB | 1192 | CG11980-RB | 35..878 | 17..862 | 4155 | 99.5 | Plus |
CG11980-RA | 1179 | CG11980-RA | 44..865 | 42..862 | 4085 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9004506..9005017 | 352..862 | 2510 | 99.8 | Plus |
3R | 32079331 | 3R | 9004139..9004452 | 42..355 | 1570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:32:32 has no hits.
BS18044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:48 Download gff for
BS18044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-PC | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:04:02 Download gff for
BS18044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RC | 29..880 | 8..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:15 Download gff for
BS18044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RC | 29..880 | 8..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:15 Download gff for
BS18044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9004139..9004451 | 42..354 | 100 | -> | Plus |
3R | 9004509..9005016 | 355..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:04:02 Download gff for
BS18044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4829861..4830173 | 42..354 | 100 | -> | Plus |
arm_3R | 4830231..4830738 | 355..861 | 99 | | Plus |
BS18044.pep Sequence
Translation from 16 to 1095
> BS18044.pep
MFRLLPRFPGKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVACFMLKQLD
EYKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQITFKETFSS
VRPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSPENLQTAF
IQIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNPSWQETGV
DIEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAKNVHPTGE
ILVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGVPVTPGSY
LGRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEEAAMLLAK
KSTEWTEEQ*
BS18044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-PC | 359 | CG11980-PC | 1..359 | 1..359 | 1911 | 100 | Plus |
CG11980-PB | 358 | CG11980-PB | 1..358 | 1..359 | 1884 | 99.4 | Plus |
CG11980-PA | 345 | CG11980-PA | 1..345 | 15..359 | 1839 | 100 | Plus |