Clone BS18044 Report

Search the DGRC for BS18044

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG11980-RC
Protein status:BS18044.pep: full length peptide match
Sequenced Size:1112

Clone Sequence Records

BS18044.complete Sequence

1112 bp assembled on 2010-02-09

GenBank Submission: KX802632

> BS18044.complete
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCCAGGAAAAC
TATCTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATC
GGCACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTAT
GCTCAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGG
ACAACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGC
GTTTATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAA
GGAGACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTG
TCAGGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTT
ATACAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAA
CCTGCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGG
ACGCAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATAC
AAAATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTG
GCAGGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATA
CTGCAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGG
ATTCCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGT
CCATCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGT
CTCATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAG
CTGGTCGTCTTCAACAGCGGCAATAGTTGGCGAGTGGCCGGAGTTCCAGT
GACGCCTGGCAGCTATCTGGGCCGCAAATTTCTGCCCACTCCTTGGCGCG
GACTGATGGACGATGAACTATGCGATAAGGCGAGCATCAAAGATCTCGAA
TTCATCCATCACACAGGATTTATTGGCGGGGCAAAAACCGAGGAGGCTGC
CATGTTGTTGGCCAAGAAATCCACCGAGTGGACAGAAGAGCAATAAAAGC
TTTCTAGACCAT

BS18044.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RC 1080 CG11980-PC 1..1080 17..1096 5400 100 Plus
CG11980-RB 1077 CG11980-PB 1..1077 17..1096 5320 99.7 Plus
CG11980-RA 1038 CG11980-PA 1..1038 59..1096 5190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RC 1195 CG11980-RC 35..1114 17..1096 5400 100 Plus
CG11980-RB 1192 CG11980-RB 35..1111 17..1096 5320 99.7 Plus
CG11980-RA 1179 CG11980-RA 44..1098 42..1096 5275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9005250 352..1096 3725 100 Plus
3R 32079331 3R 9004139..9004452 42..355 1570 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:26:03 has no hits.

BS18044.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:12 Download gff for BS18044.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 27..1099 22..1094 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:18 Download gff for BS18044.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 40..1112 22..1094 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:10 Download gff for BS18044.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 27..1099 22..1094 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:41 Download gff for BS18044.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 40..1112 22..1094 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:41 Download gff for BS18044.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9004056..9004075 22..41 100 -> Plus
3R 9004139..9004451 42..354 100 -> Plus
3R 9004509..9005248 355..1094 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:18 Download gff for BS18044.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4829778..4829797 22..41 100 -> Plus
arm_3R 4829861..4830173 42..354 100 -> Plus
arm_3R 4830231..4830970 355..1094 100   Plus

BS18044.3prime Sequence

837 bp (755 high quality bases) assembled on 2007-06-06

> BS18044.3prime
CCCTTCAGGGGCGCCAAACGAATGGTCTAGAAAGCTTTTATTGCTCTTCT
GTCCACTCGGTGGATTTCTTGGCCAACAACATGGCAGCCTCCTCGGTTTT
TGCCCCGCCAATAAATCCTGTGTGATGGATGAATTCGAGATCTTTGATGC
TCGCCTTATCGCATAGTTCATCGTCCATCAGTCCGCGCCAAGGAGTGGGC
AGAAATTTGCGGCCCAGATAGCTGCCAGGCGTCACTGGAACTCCGGCCAC
TCGCCAACTATTGCCGCTGTTGAAGACGACCAGCTTGGGCACACCCTCCA
CCTTGTACTCCTTTTCAAGATCGAACAGATGAGACTTCCAGGGGCAGAAA
TTCTTCAACACAAGAATCTCGCCGGTGGGATGGACGTTCTTGGCATTTTT
AAGAGCCTCTCGTACGTGATCCCGGGCTGGAATCCAGGAACATGATACCT
CCACAACGTTGTCCACAAACTCACGACCTGCAGTATCCATCGCCTGTCTG
AATCGGTCTTCGATGTCTACGCCAGTTTCCTGCCAGGACGGATTCAGTTT
GGCAATGCGGGCAGATAGATGAGTGGAGATTTTGTATATAGGCTCAACGC
CCTCGAACATGGGCACTCCATTATCAATTGCGTCCAGTTCGTTGATAAAA
TTCCTATAGATCTGAATAAAGGCCGTTTGCAGGTTTTCCGGTGAGAGTTT
AATTCCCTTTTCGCGCTGCANGATGCTCTGTATAACACGCTCGCCATAGT
GACAGTAGACCAGTCCAGCACTGCTTAGCCTGACAACGTTGTAGTCCTCG
CTTACATCTGGGCGAACGGAACTAAAAGTCTCCTTGA

BS18044.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PB 1077 CG11980-RB 278..1077 837..38 3981 99.8 Minus
CG11980-PC 1080 CG11980-RC 281..1080 837..38 3981 99.8 Minus
CG11980-PA 1038 CG11980-RA 239..1038 837..38 3981 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RA 1179 CG11980-RA 299..1098 837..38 3989 99.9 Minus
CG11980-RC 1195 CG11980-RC 315..1114 837..38 3989 99.9 Minus
CG11980-RB 1192 CG11980-RB 312..1111 837..38 3989 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9005250 782..38 3714 99.9 Minus
3R 32079331 3R 9004394..9004452 837..779 295 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:32:20 has no hits.

BS18044.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:43 Download gff for BS18044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-PA 240..1038 38..836 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:03:59 Download gff for BS18044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 313..1111 38..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:14 Download gff for BS18044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 313..1111 38..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:14 Download gff for BS18044.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9004395..9004451 780..836 100 -> Minus
3R 9004509..9005254 30..779 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:03:59 Download gff for BS18044.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4830117..4830173 780..836 100 -> Minus
arm_3R 4830231..4830976 30..779 99 <- Minus

BS18044.5prime Sequence

862 bp (815 high quality bases) assembled on 2007-06-06

> BS18044.5prime
GAAGTTATCCCTCGACATGTTCCGATTGTTACCTCGTTTTCCAGGAAAAC
TATCTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATC
GGCACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTAT
GCTCAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGG
ACAACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGC
GTTTATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAA
GGAGACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTG
TCAGGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTT
ATACAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAA
CCTGCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGG
ACGCAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATAC
AAAATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTG
GCAGGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATA
CTGCAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGG
ATTCCAGCCCGGGATCACGTACGAGAGGCTCTTAAAATGCCAAGAACGTC
CATCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGTC
TCATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAGC
TGGTCGTCTTCA

BS18044.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PC 1080 CG11980-RC 1..721 17..737 3605 100 Plus
CG11980-PB 1077 CG11980-RB 26..718 45..737 3465 100 Plus
CG11980-PA 1038 CG11980-RA 1..679 59..737 3395 100 Plus
CG11980-PC 1080 CG11980-RC 719..847 734..862 645 100 Plus
CG11980-PB 1077 CG11980-RB 716..844 734..862 645 100 Plus
CG11980-PA 1038 CG11980-RA 677..805 734..862 645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RC 1195 CG11980-RC 35..881 17..862 4210 99.9 Plus
CG11980-RB 1192 CG11980-RB 35..878 17..862 4155 99.5 Plus
CG11980-RA 1179 CG11980-RA 44..865 42..862 4085 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9005017 352..862 2510 99.8 Plus
3R 32079331 3R 9004139..9004452 42..355 1570 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:32:32 has no hits.

BS18044.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:02:48 Download gff for BS18044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-PC 1..846 17..861 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:04:02 Download gff for BS18044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 29..880 8..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:15 Download gff for BS18044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 29..880 8..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:15 Download gff for BS18044.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9004139..9004451 42..354 100 -> Plus
3R 9004509..9005016 355..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:04:02 Download gff for BS18044.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4829861..4830173 42..354 100 -> Plus
arm_3R 4830231..4830738 355..861 99   Plus

BS18044.pep Sequence

Translation from 16 to 1095

> BS18044.pep
MFRLLPRFPGKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVACFMLKQLD
EYKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQITFKETFSS
VRPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSPENLQTAF
IQIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNPSWQETGV
DIEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAKNVHPTGE
ILVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGVPVTPGSY
LGRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEEAAMLLAK
KSTEWTEEQ*

BS18044.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PC 359 CG11980-PC 1..359 1..359 1911 100 Plus
CG11980-PB 358 CG11980-PB 1..358 1..359 1884 99.4 Plus
CG11980-PA 345 CG11980-PA 1..345 15..359 1839 100 Plus