Clone Sequence Records
BS18048.complete Sequence
1397 bp assembled on 2009-12-07
GenBank Submission: KX800455
> BS18048.complete
GAAGTTATCAGTCGACATGAGAGAAATCGTGAACCTGCAGGCCGGCCAGT
GCGGCAACCAAATCGGCGCTAAGTTCTGGGAGATCATTTCCGAGGAGCAC
GGCATCGACAGCAATGGCATCTACGTGGGCGACAGTGATCTGCAGCTGGA
GCGCGTCAGTGTCTACTACAACGAAGCATCGGCAGTCACGCGGTCGTCGG
GTGGTAAGTACGTGCCCAGGGCCATCCTGCTCGATCTGGAGCCCGGAACC
ATGGAGTCGGTGCGTTCCGGTCCGTACGGACAACTCTTCCGGCCGGACAA
CTTCGTGTACGGACAGTCGGGAGCGGGCAACAACTGGGCCAAGGGTCACT
ACACCGAGGGCGCCGAGCTGGTGGACAATGTCCTGGACGTGGTCCGCAAG
GAGTGCGAGAACTGCGACTGCCTGCAGGGCTTCCAATTGACGCACTCGCT
GGGCGGCGGCACTGGGTCCGGAATGGGCACCCTGCTGATCTCGAAGATCC
GCGAGGAGTACCCCGACCGCATCATGAACACCTACTCGGTGGTGCCATCG
CCCAAGGTGTCGGACACCGTGGTGGAGCCCTACAACGCCACCCTGTCGAT
CCACCAGCTGGTGGAGAACACAGACGAGACGTACTGCATCGACAACGAGG
CGCTGTACGACATCTGCTTCCGGACGCTGAAGGTGTCGAATCCCAGCTAC
GGAGACTTGAACCACCTGGTCTCGCTGACCATGTCCGGGGTGACCACCTG
CCTGCGTTTCCCCGGCCAGCTGAACGCCGATCTGCGCAAGCTGGCGGTCA
ACATGGTTCCATTCCCGCGTCTCCACTTCTTCATGCCCGGATTCGCGCCG
CTCACCTCGCGCGGATCGCAGCAGTACCGCGCCCTCACCGTTCCCGAACT
GACCCAGCAGATGTTCGACGCCAAGAACATGATGGCCGCCTGTGATCCAC
GCCACGGTCGCTACCTCACGGTGGCCGCCGTCTTCCGCGGCCGCATGTCC
ATGAAGGAGGTGGACGAGCAGATGCTGGCGGTGCAGAACAAGAACAGCTC
CTACTTCGTGGAGTGGATCCCGAACAATGTGAAGACCGCGGTGTGCGACA
TCCCGCCGAAGGGCCTGAAGATGTCCTCAACGTTCATCGGCAACACCACG
GCCATCCAGGAGCTGTTCAAGCGGATCTCCGAGCAGTTCTCGGCCATGTT
CCGGCGCAAGGCCTTCCTGCACTGGTACACCGGCGAGGGCATGGACGAGA
TGGAGTTCACCGAGGCGGAGAGCAACATGAACGACCTGGTGTCCGAGTAC
CAGCAGTACCAGGAGGCCACCGCCGACGACGAGTTCGACCCGGAGGTCAA
TCAGGAGGAGGTCGAGGGCGATTGTATTTAAAAGCTTTCTAGACCAT
BS18048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub60D-RA | 1365 | CG3401-PA | 1..1365 | 17..1381 | 6810 | 99.9 | Plus |
| betaTub60D-RB | 1362 | CG3401-PB | 1..1362 | 17..1381 | 6730 | 99.7 | Plus |
| betaTub56D-RB | 1344 | CG9277-PB | 1..1295 | 17..1329 | 3665 | 85.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub60D-RA | 2518 | CG3401-RA | 202..1566 | 17..1381 | 6810 | 99.9 | Plus |
| betaTub60D-RB | 2515 | CG3401-RB | 202..1563 | 17..1381 | 6730 | 99.7 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 112..1406 | 17..1329 | 3665 | 85.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24311192..24312147 | 426..1381 | 4780 | 100 | Plus |
| 2R | 25286936 | 2R | 19447509..19448643 | 1329..195 | 3530 | 87.4 | Minus |
| 3R | 32079331 | 3R | 9408695..9409603 | 1333..425 | 2580 | 85.6 | Minus |
| 2R | 25286936 | 2R | 24310892..24311138 | 182..428 | 1220 | 99.6 | Plus |
| 3R | 32079331 | 3R | 27967268..27967587 | 1313..994 | 880 | 85 | Minus |
| 3R | 32079331 | 3R | 27968929..27969185 | 987..731 | 775 | 86.8 | Minus |
| 3R | 32079331 | 3R | 27972919..27973151 | 558..326 | 685 | 86.3 | Minus |
| 2R | 25286936 | 2R | 24310720..24310830 | 72..182 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 27969661..27969829 | 723..555 | 455 | 84.6 | Minus |
| 3R | 32079331 | 3R | 9409659..9409851 | 428..236 | 410 | 80.8 | Minus |
| 2R | 25286936 | 2R | 24306082..24306138 | 17..73 | 285 | 100 | Plus |
| 3R | 32079331 | 3R | 27969439..27969538 | 668..569 | 245 | 83 | Minus |
| 2R | 25286936 | 2R | 19448646..19448748 | 174..72 | 215 | 80.6 | Minus |
| 3L | 28110227 | 3L | 6531602..6531723 | 725..846 | 205 | 77.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:35:43 has no hits.
BS18048.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:16 Download gff for
BS18048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub60D-RA | 1..1365 | 17..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:43 Download gff for
BS18048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub60D-RA | 201..1563 | 17..1379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:10 Download gff for
BS18048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub60D-RA | 202..1564 | 17..1379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:16 Download gff for
BS18048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub60D-RA | 196..1565 | 12..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:18 Download gff for
BS18048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub60D-RA | 202..1564 | 17..1379 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:18 Download gff for
BS18048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24306082..24306138 | 17..73 | 100 | -> | Plus |
| 2R | 24310722..24310830 | 74..182 | 100 | -> | Plus |
| 2R | 24310893..24311137 | 183..427 | 99 | -> | Plus |
| 2R | 24311194..24312145 | 428..1379 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:10 Download gff for
BS18048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20193605..20193661 | 17..73 | 100 | -> | Plus |
| arm_2R | 20198245..20198353 | 74..182 | 100 | -> | Plus |
| arm_2R | 20198416..20198660 | 183..427 | 99 | -> | Plus |
| arm_2R | 20198717..20199668 | 428..1379 | 100 | | Plus |
BS18048.3prime Sequence
819 bp (802 high quality bases) assembled on 2007-06-06
> BS18048.3prime
ATGGTCTAGAAAGCTTTTAAATACAATCGCCCTCGACCTCCTCCTGATTG
ACCTCCGGGTCGAACTCGTCGTCGGCGGTGGCCTCCTGGTACTGCTGGTA
CTCGGACACCAGGTCGTTCATGTTGCTCTCCGCCTCGGTGAACTCCATCT
CGTCCATGCCCTCGCCGGTGTACCAGTGCAGGAAGGCCTTGCGCCGGAAC
ATGGCCGAGAACTGCTCGGAGATCCGCTTGAACAGCTCCTGGATGGCCGT
GGTGTTGCCGATGAACGTTGAGGACATCTTCAGGCCCTTCGGCGGGATGT
CGCACACCGCGGTCTTCACATTGTTCGGGATCCACTCCACGAAGTAGGAG
CTGTTCTTGTTCTGCACCGCCAGCATCTGCTCGTCCACCTCCTTCATGGA
CATGCGGCCGCGGAAGACGGCGGCCACCGTGAGGTAGCGACCGTGGCGTG
GATCACAGGCGGCCATCATGTTCTTGGCGTCGAACATCTGCTGGGTCAGT
TCGGGAACGGTGAGGGCGCGGTACTGCTGCGATCCGCGCGAGGTGAGCGG
CGCGAATCCGGGCATGAAGAAGTGGAGACGCGGGAATGGAACCATGTTGA
CCGCCAGCTTGCGCAGATCGGCGTTCAGCTGGCCGGGGAAACGCAGGCAG
GTGGTCACCCCGGACATGGTCAGCGAGACCAGGTGGTTCAAGTCTCCGTA
GCTGGGATTCGACACCTTCAGCGTCCGGAAGCAGATGTCGTACAGCGCCT
CGTTGTCGATGCAGTACGTCTCGTCTGTGTTCTCCACCAGCTGGTGGATC
GACAGGGTGGCGTTGTAGG
BS18048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3401-PA | 1365 | betaTub60D-RA | 563..1365 | 819..17 | 4015 | 100 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 674..993 | 690..371 | 725 | 89 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 701..1020 | 690..371 | 725 | 89 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 458..777 | 690..371 | 725 | 89 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 458..777 | 690..371 | 725 | 89 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 1081..1295 | 283..69 | 700 | 93 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 1108..1322 | 283..69 | 700 | 93 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 865..1079 | 283..69 | 700 | 93 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 865..1079 | 283..69 | 700 | 93 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 1312..1493 | 247..66 | 585 | 92.8 | Minus |
| CG9359-PA | 1341 | betaTub85D-RA | 694..902 | 670..462 | 470 | 88.9 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 892..1013 | 667..546 | 360 | 91.8 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 545..638 | 819..726 | 270 | 91.4 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 572..665 | 819..726 | 270 | 91.4 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 329..422 | 819..726 | 270 | 91.4 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 329..422 | 819..726 | 270 | 91.4 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 547..648 | 817..716 | 260 | 90.1 | Minus |
| CG9359-PA | 1341 | betaTub85D-RA | 1174..1283 | 190..81 | 250 | 89 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 1000..1073 | 364..291 | 245 | 93.2 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 1027..1100 | 364..291 | 245 | 93.2 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 784..857 | 364..291 | 245 | 93.2 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 784..857 | 364..291 | 245 | 93.2 | Minus |
| CG9359-PA | 1341 | betaTub85D-RA | 571..638 | 793..726 | 240 | 94.1 | Minus |
| CG9359-PA | 1341 | betaTub85D-RA | 940..992 | 424..372 | 215 | 96.2 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 1039..1137 | 520..422 | 195 | 87.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub60D-RB | 2515 | CG3401-RB | 761..1563 | 819..17 | 4015 | 100 | Minus |
| betaTub60D-RA | 2518 | CG3401-RA | 764..1566 | 819..17 | 4015 | 100 | Minus |
| betaTub56D-RA | 1701 | CG9277-RA | 761..1511 | 819..69 | 2495 | 88.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24311345..24312147 | 819..17 | 4015 | 100 | Minus |
| 2R | 25286936 | 2R | 19447509..19448259 | 69..819 | 2495 | 88.8 | Plus |
| 3R | 32079331 | 3R | 9408695..9409449 | 65..819 | 2005 | 84.4 | Plus |
| 3R | 32079331 | 3R | 27967268..27967587 | 85..404 | 880 | 85 | Plus |
| 3R | 32079331 | 3R | 27968929..27969185 | 411..667 | 775 | 86.8 | Plus |
| 3R | 32079331 | 3R | 27969661..27969803 | 675..817 | 400 | 85.3 | Plus |
| 3L | 28110227 | 3L | 6531602..6531723 | 673..552 | 205 | 77.9 | Minus |
| 3R | 32079331 | 3R | 27969439..27969523 | 730..814 | 200 | 82.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:46:46 has no hits.
BS18048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:03:30 Download gff for
BS18048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3401-PA | 563..1365 | 17..819 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:44 Download gff for
BS18048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub60D-RA | 764..1566 | 17..819 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:32:32 Download gff for
BS18048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub60D-RA | 764..1566 | 17..819 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:32:32 Download gff for
BS18048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24311345..24312147 | 17..819 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:44 Download gff for
BS18048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20198868..20199670 | 17..819 | 100 | | Minus |
BS18048.5prime Sequence
872 bp (735 high quality bases) assembled on 2007-06-06
> BS18048.5prime
GAAGTTATCAGTCGACATGAGAGAAATCGTGAACCTGCAGGCCGGCCAGT
GCGGCAACCAAATCGGCGCTAAGTTCTGGGAGATCATTTCCGAGGAGCAC
GGCATCGACAGCAATGGCATCTACGTGGGCGACAGTGATCTGCAGCTGGA
GCGCGTCAGTGTCTACTACAACGAAGCATCGGCAGTCACGCGGTCGTCGG
GTGGTAAGTACGTGCCCAGGGCCATCCTGCTCGATCTGGAGCCCGGAACC
ATGGAGTCGGTGCGTTCCGGTCCGTACGGACAACTCTTCCGGCCGGACAA
CTTCGTGTACGGACAGTCGGGAGCGGGCAACAACTGGGCCAAGGGTCACT
ACACCGAGGGCGCCGAGCTGGTGGACAATGTCCTGGACGTGGTCCGCAAG
GAGTGCGAGAACTGCGACTGCCTGCAGGGCTTCCAATTGACGCACTCGCT
GGGCGGCGGCACTGGGTCCGGAATGGGCACCCTGCTGATCTCGAAGATCC
GCGAGGAGTACCCCGACCGCATCATGAACACCTACTCGGTGGTGCCATCG
CCCAAGGTGTCGGACACCGTGGTGGAGCCCTACAACGCCACCCTGTCGAT
CCACCAGCTGGTGGAGAACACAGACGAGACGTACTGCATCGACAACGAGG
CGCTGTACGACATCTGCTTCCGGACGCTGAAGGTGTCGAATCCCAGCTAC
GGAGACTTGAACCACCTGGTCTCGCTGACCATGTCCGGGGTGACCACCTG
CCTGCGTTTCCCCGGCCAGCTGAACGCCGATCTGCGCAAGCTGGCGGTCA
ACATGGTTCCATTCCCGCGTCTCAACTTCTTCATGCCCGGATTCGCGCCG
CTCACCTCGCGCGGATCGCAGC
BS18048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3401-PA | 1365 | betaTub60D-RA | 1..856 | 17..872 | 4230 | 99.7 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 378..638 | 412..672 | 680 | 90.4 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 405..665 | 412..672 | 680 | 90.4 | Plus |
| CG9277-PC | 1128 | betaTub56D-RC | 162..422 | 412..672 | 680 | 90.4 | Plus |
| CG9277-PD | 1128 | betaTub56D-RD | 162..422 | 412..672 | 680 | 90.4 | Plus |
| CG4869-PA | 1569 | betaTub97EF-RA | 409..648 | 443..682 | 550 | 89.1 | Plus |
| CG9359-PA | 1341 | betaTub85D-RA | 379..561 | 413..595 | 515 | 91.2 | Plus |
| CG4869-PA | 1569 | betaTub97EF-RA | 892..1013 | 731..852 | 335 | 90.9 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 674..812 | 708..846 | 270 | 87.7 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 701..839 | 708..846 | 270 | 87.7 | Plus |
| CG9277-PC | 1128 | betaTub56D-RC | 458..596 | 708..846 | 270 | 87.7 | Plus |
| CG9277-PD | 1128 | betaTub56D-RD | 458..596 | 708..846 | 270 | 87.7 | Plus |
| CG4869-PA | 1569 | betaTub97EF-RA | 253..336 | 287..370 | 245 | 91.6 | Plus |
| CG9359-PA | 1341 | betaTub85D-RA | 571..638 | 605..672 | 240 | 94.1 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 31..92 | 47..108 | 210 | 93.5 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 251..342 | 285..376 | 185 | 88 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 278..369 | 285..376 | 185 | 88 | Plus |
| CG9277-PC | 1128 | betaTub56D-RC | 35..126 | 285..376 | 185 | 88 | Plus |
| CG9277-PD | 1128 | betaTub56D-RD | 35..126 | 285..376 | 185 | 88 | Plus |
| CG9359-PA | 1341 | betaTub85D-RA | 791..836 | 825..870 | 180 | 95.6 | Plus |
| CG9359-PA | 1341 | betaTub85D-RA | 694..773 | 728..807 | 175 | 88.7 | Plus |
| CG9359-PA | 1341 | betaTub85D-RA | 283..326 | 317..360 | 170 | 95.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub60D-RA | 2518 | CG3401-RA | 202..1057 | 17..872 | 4250 | 99.8 | Plus |
| betaTub60D-RB | 2515 | CG3401-RB | 202..1054 | 17..872 | 4195 | 99.4 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 112..949 | 17..872 | 2040 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24311192..24311638 | 426..872 | 2220 | 99.8 | Plus |
| 2R | 25286936 | 2R | 19447966..19448643 | 872..195 | 1875 | 85.1 | Minus |
| 3R | 32079331 | 3R | 9409158..9409603 | 870..425 | 1390 | 87.4 | Minus |
| 2R | 25286936 | 2R | 24310892..24311138 | 182..428 | 1220 | 99.6 | Plus |
| 3R | 32079331 | 3R | 27972919..27973151 | 558..326 | 685 | 86.3 | Minus |
| 2R | 25286936 | 2R | 24310720..24310830 | 72..182 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 27969661..27969829 | 723..555 | 455 | 84.6 | Minus |
| 3R | 32079331 | 3R | 27969060..27969185 | 856..731 | 450 | 90.5 | Minus |
| 3R | 32079331 | 3R | 9409659..9409851 | 428..236 | 410 | 80.8 | Minus |
| 2R | 25286936 | 2R | 24306082..24306138 | 17..73 | 285 | 100 | Plus |
| 3R | 32079331 | 3R | 27969439..27969538 | 668..569 | 245 | 83 | Minus |
| 2R | 25286936 | 2R | 19448646..19448748 | 174..72 | 215 | 80.6 | Minus |
| 3L | 28110227 | 3L | 6531602..6531723 | 725..846 | 190 | 77 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:32:45 has no hits.
BS18048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:03:35 Download gff for
BS18048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3401-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:04:04 Download gff for
BS18048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub60D-RA | 197..1057 | 12..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:17 Download gff for
BS18048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub60D-RA | 197..1057 | 12..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:17 Download gff for
BS18048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24310893..24311137 | 183..427 | 99 | -> | Plus |
| 2R | 24306077..24306138 | 12..73 | 96 | -> | Plus |
| 2R | 24310722..24310830 | 74..182 | 100 | -> | Plus |
| 2R | 24311194..24311638 | 428..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:04:04 Download gff for
BS18048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20193600..20193661 | 12..73 | 96 | -> | Plus |
| arm_2R | 20198245..20198353 | 74..182 | 100 | -> | Plus |
| arm_2R | 20198416..20198660 | 183..427 | 99 | -> | Plus |
| arm_2R | 20198717..20199161 | 428..872 | 99 | | Plus |
BS18048.pep Sequence
Translation from 16 to 1380
> BS18048.pep
MREIVNLQAGQCGNQIGAKFWEIISEEHGIDSNGIYVGDSDLQLERVSVY
YNEASAVTRSSGGKYVPRAILLDLEPGTMESVRSGPYGQLFRPDNFVYGQ
SGAGNNWAKGHYTEGAELVDNVLDVVRKECENCDCLQGFQLTHSLGGGTG
SGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVE
NTDETYCIDNEALYDICFRTLKVSNPSYGDLNHLVSLTMSGVTTCLRFPG
QLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMF
DAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLAVQNKNSSYFVEW
IPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAF
LHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADDEFDPEVNQEEVE
GDCI*
BS18048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub60D-PA | 454 | CG3401-PA | 1..454 | 1..454 | 2395 | 100 | Plus |
| betaTub60D-PB | 453 | CG3401-PB | 1..453 | 1..454 | 2379 | 99.8 | Plus |
| betaTub56D-PB | 447 | CG9277-PB | 1..441 | 1..447 | 2163 | 90.4 | Plus |
| betaTub85D-PA | 446 | CG9359-PA | 1..441 | 1..447 | 2111 | 87.9 | Plus |
| betaTub56D-PA | 456 | CG9277-PA | 29..450 | 20..447 | 2072 | 90.4 | Plus |
