Clone Sequence Records
BS18054.3prime Sequence
761 bp (720 high quality bases) assembled on 2007-06-06
> BS18054.3prime
ATGGTCTAGAAAGCTTTTAGTTGCTCCCGCTGCTGCTCTTCAGCTGCACC
CCCAGAACCTCCCGAAGTTCGCCTAGCTCCTGCGGTCCCTGCATCAAGCG
CTTGACGCCTCGCGGCAGACCACGGCACGATGCCAAGTTGATGGAGCTCA
TATTTTGGCAGTTCGTCAGTATTTCCTTTACCGCCTCATCGGAAACAGAG
GAGCCGCATAGATTCAAATGAGCCAACGGCGAATCTCTGCCCTTTTCCGC
TAGGGCGCGCAACGCATTATCAATGGGCTGCTGCATATTCGCCCAAGCCA
AATCCAGTTCTATGAGACTGTGCGCCCACTTTGAGGCAATGAGTTCCAGA
CCCGACCCCATATCTCGTGTGACTGAGCAACCTGACAGGAATAAATGCTT
GATATCCCAGGCAGGTAAGCGGATTAGGCTCTCGTGCGTCAGTCGTGTAC
AGTTGCGTACGTCCAGTAGCTTTAGCTTGGAGCTGCTCTTAAGGATGCGC
TGCAGATGGTCGTCGCTTATGATGCGGGATTCATCTGTTAAGGCAGCCAC
GGACAGTTCTTCAAGTTCCGGAAAACCAGGTGAGTCCATAATTTCCTGCA
TTGATGCCGTGCTTGGCGTTATATGAGAGTTTGTCACACGCAGGACCTTT
AGCTTCTGGCAGCCACGCTGCAACTTCTCAATGTGGAGTACACCGTGTGA
TGTGGCCTGCGTGGTCACGTTCGAGAGATCCAATAATGTTAGATTCGGAC
AGTGCGTCGAA
BS18054.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13213-PC | 2163 | CG13213-RC | 1419..2163 | 761..17 | 3725 | 100 | Minus |
| CG13213-PB | 2163 | CG13213-RB | 1419..2163 | 761..17 | 3725 | 100 | Minus |
| CG13213-PA | 2163 | CG13213-RA | 1419..2163 | 761..17 | 3725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbl6-RA | 3700 | CG13213-RA | 2140..2884 | 761..17 | 3725 | 100 | Minus |
| Fbl6-RB | 3375 | CG13213-RB | 1815..2559 | 761..17 | 3725 | 100 | Minus |
| Fbl6-RC | 3098 | CG13213-RC | 1538..2282 | 761..17 | 3725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11286431..11286665 | 355..589 | 1175 | 100 | Plus |
| 2R | 25286936 | 2R | 11285964..11286168 | 17..221 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 11286719..11286887 | 590..758 | 845 | 100 | Plus |
| 2R | 25286936 | 2R | 11286238..11286373 | 222..357 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:38:50 has no hits.
BS18054.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:03:49 Download gff for
BS18054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13213-PA | 1421..2163 | 17..759 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 14:08:50 Download gff for
BS18054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl6-RC | 1538..2282 | 17..761 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:00 Download gff for
BS18054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbl6-RC | 1538..2282 | 17..761 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:00 Download gff for
BS18054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11285964..11286168 | 17..221 | 100 | <- | Plus |
| 2R | 11286238..11286372 | 222..356 | 100 | <- | Plus |
| 2R | 11286433..11286665 | 357..589 | 100 | <- | Plus |
| 2R | 11286719..11286891 | 590..761 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 14:08:50 Download gff for
BS18054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7173469..7173673 | 17..221 | 100 | <- | Plus |
| arm_2R | 7173743..7173877 | 222..356 | 100 | <- | Plus |
| arm_2R | 7173938..7174170 | 357..589 | 100 | <- | Plus |
| arm_2R | 7174224..7174396 | 590..761 | 98 | | Plus |
BS18054.5prime Sequence
778 bp (777 high quality bases) assembled on 2007-06-06
> BS18054.5prime
GAAGTTATCAGTCGACATGAGCGAATCTCTATCTTCTCAAGTGGAGGAGA
CCAAAGTGTCCGATGATGATGGTGTAAAAGAGAAAGCTGAAGTGTCCACC
GCCAAAGATTCGGCGGAAACGGCTATGGAAGTGGAGGCAGATGACACTGG
TGGTCAGCAGCCGGAGCAGAGTGAATTGTTGGATAAGGAGAAATCTGCCA
CGGTGGATATAAACACACTCACTCCCTCGACGCCCTCACAAACCCCGCCA
CAACTGCTGGCCGTCGAAACTGCCACATCGGGAAGCACGGCCGTCATTCC
GGAGAACATCCTGTCCCCGCCCAAGTCAGAAACTCAAACCGATGAGACTA
ACACGGCAACATCGACGTCCTGCTCCCCAGCCTCTGACGGTCAGCGGTCG
CCGGCGGCGGATCAACAGTCATCGGCACCACCGCCACAGGTACAGGCACA
GGCCACGCCGGCGCCGGTCAATGGCTCCGTACCAAAGTCGGGGAAACCAC
TCTCCACAGCGCTCAGCGGCAAGAAGACCAGCAAAGCGGCCACTACGTCA
CCACGTGCATCCAGATGCCGCAAAACCAAGGCGCTGCCCATGTACGAAAG
CGAAATCAGCGACAACAAGATGGGTATCCGACTGTGCATCAAGAAATCTG
ATGCCGGAGAAGGCGCACCTGCTGGTGTCACATCTCCGCCAGTTGCAGTT
CCCGCAGCAACAAAAACTGTGCGCAAGCGCGTCCGTAAACCAAAGCAACA
GGACAGCGATGAGGCCGAGTATGAGCCG
BS18054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13213-PC | 2163 | CG13213-RC | 1..762 | 17..778 | 3810 | 100 | Plus |
| CG13213-PB | 2163 | CG13213-RB | 1..762 | 17..778 | 3810 | 100 | Plus |
| CG13213-PA | 2163 | CG13213-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbl6-RA | 3700 | CG13213-RA | 722..1483 | 17..778 | 3810 | 100 | Plus |
| Fbl6-RB | 3375 | CG13213-RB | 397..1158 | 17..778 | 3810 | 100 | Plus |
| Fbl6-RC | 3098 | CG13213-RC | 120..881 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11287783..11288544 | 778..17 | 3810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 14:06:31 has no hits.
BS18054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:03:53 Download gff for
BS18054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13213-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:47 Download gff for
BS18054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl6-RC | 113..881 | 6..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:17:09 Download gff for
BS18054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbl6-RC | 113..881 | 6..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:17:09 Download gff for
BS18054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11287783..11288551 | 6..778 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:47 Download gff for
BS18054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7175288..7176056 | 6..778 | 99 | | Minus |
BS18054.complete Sequence
2195 bp assembled on 2008-08-15
GenBank Submission: KX800396
> BS18054.complete
GAAGTTATCAGTCGACATGAGCGAATCTCTATCTTCTCAAGTGGAGGAGA
CCAAAGTGTCCGATGATGATGGTGTAAAAGAGAAAGCTGAAGTGTCCACC
GCCAAAGATTCGGCGGAAACGGCTATGGAAGTGGAGGCAGATGACACTGG
TGGTCAGCAGCCGGAGCAGAGTGAATTGTTGGATAAGGAGAAATCTGCCA
CGGTGGATATAAACACACTCACTCCCTCGACGCCCTCACAAACCCCGCCA
CAACTGCTGGCCGTCGAAACTGCCACATCGGGAAGCACGGCCGTCATTCC
GGAGAACATCCTGTCCCCGCCCAAGTCAGAAACTCAAACCGATGAGACTA
ACACGGCAACATCGACGTCCTGCTCCCCAGCCTCTGACGGTCAGCGGTCG
CCGGCGGCGGATCAACAGTCATCGGCACCACCGCCACAGGTACAGGCACA
GGCCACGCCGGCGCCGGTCAATGGCTCCGTACCAAAGTCGGGGAAACCAC
TCTCCACAGCGCTCAGCGGCAAGAAGACCAGCAAAGCGGCCACTACGTCA
CCACGTGCATCCAGATGCCGCAAAACCAAGGCGCTGCCCATGTACGAAAG
CGAAATCAGCGACAACAAGATGGGTATCCGACTGTGCATCAAGAAATCTG
ATGCCGGAGAAGGCGCACCTGCTGGTGTCACATCTCCGCCAGTTGCAGTT
CCCGCAGCAACAAAAACTGTGCGCAAGCGCGTCCGTAAACCAAAGCAACA
GGACAGCGATGAGGCCGAGTATGAGCCGCGCAAGAAAAAAGGCGGAGGAG
GTGGTAGTGGCGGCGAAAAGAAGGTTTCAACGAGTCCGGATGCTGCGGAG
GCGGCTGGCGATCCAGTCGAGCAGAGTGTCTGGGCTCAAAAGCTGCCCGA
GGAAGTCCTATTCAGAATCTTTGAGCATGCTGTGGATACACAGGGCTGTC
TGCCCACCCTGTTTCGCCTTGGCAGAGTTTGCTCGCTCTGGCGGCAGGTG
TCTCTTAGGCCTACTCTGTGGCGCACTATGGATCTTACCACATGGGTCAA
AGAGAAATATCGCACCGAACTCAAGCTCAAGTGGTTTGTCGACAACCGCT
GCAGTGCCTGTACAGACTTGAATGTTTCCAATTGGAAAATATCAGACATA
AATTGCTTCCTTGCCAAATTGTCAAGCGGGTGCCCGAACCTTGCAGGCAT
TACGCTCTCCGGCTGGAAAGGTTTCACTTCGGATCATCTTACGTATTTGG
TGGATAACATGCACAAGTTGCAGCGCTTGGACTTAAGTTCCATCAATGTT
GAGATGAATGCCAGCAAGAGCGCCGTGGGTGTCAACTCCCTATGCAATGC
ACTCCAGACCATGGGCAGCCGTCTAACACATCTCTATTTGGCGCACAATC
GTCTGGCAGGAATACCACAAATAGTCGGAATTCTTTCGACGCACTGTCCG
AATCTAACATTATTGGATCTCTCGAACGTGACCACGCAGGCCACATCACA
CGGTGTACTCCACATTGAGAAGTTGCAGCGTGGCTGCCAGAAGCTAAAGG
TCCTGCGTGTGACAAACTCTCATATAACGCCAAGCACGGCATCAATGCAG
GAAATTATGGACTCACCTGGTTTTCCGGAACTTGAAGAACTGTCCGTGGC
TGCCTTAACAGATGAATCCCGCATCATAAGCGACGACCATCTGCAGCGCA
TCCTTAAGAGCAGCTCCAAGCTAAAGCTACTGGACGTACGCAACTGTACA
CGACTGACGCACGAGAGCCTAATCCGCTTACCTGCCTGGGATATCAAGCA
TTTATTCCTGTCAGGTTGCTCAGTCACACGAGATATGGGGTCGGGTCTGG
AACTCATTGCCTCAAAGTGGGCGCACAGTCTCATAGAACTGGATTTGGCT
TGGGCGAATATGCAGCAGCCCATTGATAATGCGTTGCGCGCCCTAGCGGA
AAAGGGCAGAGATTCGCCGTTGGCTCATTTGAATCTATGCGGCTCCTCTG
TTTCCGATGAGGCGGTAAAGGAAATACTGACGAACTGCCAAAATATGAGC
TCCATCAACTTGGCATCGTGCCGTGGTCTGCCGCGAGGCGTCAAGCGCTT
GATGCAGGGACCGCAGGAGCTAGGCGAACTTCGGGAGGTTCTGGGGGTGC
AGCTGAAGAGCAGCAGCGGGAGCAACTAAAAGCTTTCTAGACCAT
BS18054.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbl6-RA | 2163 | CG13213-PA | 1..2163 | 17..2179 | 10815 | 100 | Plus |
| Fbl6-RB | 2163 | CG13213-PB | 1..2163 | 17..2179 | 10815 | 100 | Plus |
| Fbl6-RC | 2163 | CG13213-PC | 1..2163 | 17..2179 | 10815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbl6-RA | 3700 | CG13213-RA | 722..2884 | 17..2179 | 10815 | 100 | Plus |
| Fbl6-RB | 3375 | CG13213-RB | 397..2559 | 17..2179 | 10815 | 100 | Plus |
| Fbl6-RC | 3098 | CG13213-RC | 120..2282 | 17..2179 | 10815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11287645..11288544 | 916..17 | 4500 | 100 | Minus |
| 2R | 25286936 | 2R | 11286431..11286665 | 1841..1607 | 1175 | 100 | Minus |
| 2R | 25286936 | 2R | 11287376..11287586 | 1127..917 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 11285964..11286168 | 2179..1975 | 1025 | 100 | Minus |
| 2R | 25286936 | 2R | 11287146..11287317 | 1299..1128 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 11286719..11286887 | 1606..1438 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 11286951..11287091 | 1438..1298 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 11286238..11286373 | 1974..1839 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:55:45 has no hits.
BS18054.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:42:03 Download gff for
BS18054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13213-RA | 691..2860 | 6..2179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:38 Download gff for
BS18054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl6-RC | 120..2280 | 17..2177 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:15 Download gff for
BS18054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13213-RA | 698..2858 | 17..2177 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:52 Download gff for
BS18054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbl6-RC | 120..2280 | 17..2177 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:52 Download gff for
BS18054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11287376..11287586 | 917..1127 | 100 | <- | Minus |
| 2R | 11285966..11286168 | 1975..2177 | 100 | <- | Minus |
| 2R | 11286238..11286372 | 1840..1974 | 100 | <- | Minus |
| 2R | 11286433..11286665 | 1607..1839 | 100 | <- | Minus |
| 2R | 11286719..11286886 | 1439..1606 | 100 | <- | Minus |
| 2R | 11286951..11287091 | 1298..1438 | 100 | <- | Minus |
| 2R | 11287148..11287317 | 1128..1297 | 100 | <- | Minus |
| 2R | 11287645..11288544 | 17..916 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:38 Download gff for
BS18054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7174881..7175091 | 917..1127 | 100 | <- | Minus |
| arm_2R | 7173938..7174170 | 1607..1839 | 100 | <- | Minus |
| arm_2R | 7174224..7174391 | 1439..1606 | 100 | <- | Minus |
| arm_2R | 7173471..7173673 | 1975..2177 | 100 | <- | Minus |
| arm_2R | 7173743..7173877 | 1840..1974 | 100 | <- | Minus |
| arm_2R | 7174456..7174596 | 1298..1438 | 100 | <- | Minus |
| arm_2R | 7174653..7174822 | 1128..1297 | 100 | <- | Minus |
| arm_2R | 7175150..7176049 | 17..916 | 100 | | Minus |
BS18054.pep Sequence
Translation from 16 to 2178
> BS18054.pep
MSESLSSQVEETKVSDDDGVKEKAEVSTAKDSAETAMEVEADDTGGQQPE
QSELLDKEKSATVDINTLTPSTPSQTPPQLLAVETATSGSTAVIPENILS
PPKSETQTDETNTATSTSCSPASDGQRSPAADQQSSAPPPQVQAQATPAP
VNGSVPKSGKPLSTALSGKKTSKAATTSPRASRCRKTKALPMYESEISDN
KMGIRLCIKKSDAGEGAPAGVTSPPVAVPAATKTVRKRVRKPKQQDSDEA
EYEPRKKKGGGGGSGGEKKVSTSPDAAEAAGDPVEQSVWAQKLPEEVLFR
IFEHAVDTQGCLPTLFRLGRVCSLWRQVSLRPTLWRTMDLTTWVKEKYRT
ELKLKWFVDNRCSACTDLNVSNWKISDINCFLAKLSSGCPNLAGITLSGW
KGFTSDHLTYLVDNMHKLQRLDLSSINVEMNASKSAVGVNSLCNALQTMG
SRLTHLYLAHNRLAGIPQIVGILSTHCPNLTLLDLSNVTTQATSHGVLHI
EKLQRGCQKLKVLRVTNSHITPSTASMQEIMDSPGFPELEELSVAALTDE
SRIISDDHLQRILKSSSKLKLLDVRNCTRLTHESLIRLPAWDIKHLFLSG
CSVTRDMGSGLELIASKWAHSLIELDLAWANMQQPIDNALRALAEKGRDS
PLAHLNLCGSSVSDEAVKEILTNCQNMSSINLASCRGLPRGVKRLMQGPQ
ELGELREVLGVQLKSSSGSN*
BS18054.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbl6-PA | 720 | CG13213-PA | 1..720 | 1..720 | 3689 | 100 | Plus |
| Fbl6-PB | 720 | CG13213-PB | 1..720 | 1..720 | 3689 | 100 | Plus |
| Fbl6-PC | 720 | CG13213-PC | 1..720 | 1..720 | 3689 | 100 | Plus |
