Clone BS18055 Report

Search the DGRC for BS18055

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptSu(var)2-10-RF
Protein status:BS18055.pep: full length peptide match
Sequenced Size:1634

Clone Sequence Records

BS18055.complete Sequence

1634 bp assembled on 2009-12-07

GenBank Submission: KX804603

> BS18055.complete
GAAGTTATCAGTCGACATGCCATTTCCGTCTCTTCAGGAATGTGAGCAAA
TGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGTCGTTTCTG
AACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCGCATCCTCTC
GTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCCAGGAAGTCT
ACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTACATCGACCCA
ACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCAGCCCAATCC
CGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGGCGGCCAGA
TGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGCATCAACAGC
CAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGCCTTCTACGA
TGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCACGCAACACTC
AGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCGCAGCAGGCC
ACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAAGGTGGAGCA
CGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTCGTGCGACC
AGGAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAACAACAAACTC
TGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGTGGAGCCCAA
GCGTCCGCCGCGACCCGTTAATGTCACGTCCAATGTAAAGCTGTCGCCTA
CCGTCACCAACACCATAACGGTTCAGTGGTGTCCGGACTACACTCGTAGC
TACTGTCTGGCCGTATACCTGGTAAAGAAGCTCACCTCAACACAGCTTTT
GCAGCGAATGAAGACGAAGGGCGTAAAACCAGCGGACTACACGCGAGGCT
TAATCAAAGAGAAGCTGACTGAGGATGCTGACTGCGAAATAGCCACCACT
ATGCTGAAGGTTTCCCTTAACTGCCCGTTGGGCAAGATGAAAATGTTGCT
GCCTTGTCGAGCATCAACCTGCTCGCATCTGCAATGCTTCGATGCCAGTC
TCTACCTGCAAATGAATGAGCGTAAGCCCACGTGGAACTGCCCTGTATGC
GACAAGCCGGCCATTTATGACAACCTGGTCATAGATGGCTACTTCCAGGA
GGTGTTGGGCTCGTCGCTTCTAAAGAGTGATGATACTGAGATTCAACTTC
ATCAGGATGGATCTTGGAGCACACCAGGACTACGGAGCGAGACGCAGATC
CTTGATACGCCTTCAAAGCCCGCCCAAAAGGTTGAGGTTATATCGGATGA
CATAGAACTTATCTCGGATGACGCCAAGCCAGTAAAGAGGGATTTGTCCC
CAGCACAGGACGAACAGCCCACATCAACGTCAAACAGTGAAACTGTTGAC
CTAACGTTAAGCGATTCAGACGACGACATGCCGCTGGCTAAGCGTCGTCC
GCCCGCCAAGCAAGCCGTCGCCAGTTCCACGTCGAACGGCAGCGGTGGCG
GCCAACGTGCCTATACCCCGGCACAGCAGCCCCAGCAATCCGGTACGTTG
GATCCCTTTTTGCAATAAAAGCTTTCTAGACCAT

BS18055.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RF 1602 CG8068-PF 1..1602 17..1618 8010 100 Plus
Su(var)2-10-RH 1710 CG8068-PH 128..1710 36..1618 7915 100 Plus
Su(var)2-10-RC 1698 CG8068-PC 1..1578 17..1594 7890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RF 2548 CG8068-RF 535..2141 12..1618 8020 99.9 Plus
Su(var)2-10-RE 2847 CG8068-RE 233..1815 36..1618 7915 100 Plus
Su(var)2-10-RH 2943 CG8068-RH 329..1911 36..1618 7915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9117152..9117852 12..712 3490 99.9 Plus
2R 25286936 2R 9117917..9118157 713..953 1205 100 Plus
2R 25286936 2R 9118215..9118449 954..1188 1175 100 Plus
2R 25286936 2R 9118900..9119073 1445..1618 870 100 Plus
2R 25286936 2R 9118505..9118672 1188..1355 840 100 Plus
2R 25286936 2R 9118737..9118829 1354..1446 465 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:35:39 has no hits.

BS18055.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:17 Download gff for BS18055.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 1..1602 17..1618 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:42 Download gff for BS18055.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 571..2170 17..1616 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:07 Download gff for BS18055.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 540..2139 17..1616 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:17 Download gff for BS18055.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 561..2174 7..1622 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:16 Download gff for BS18055.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 540..2139 17..1616 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:16 Download gff for BS18055.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9118215..9118449 954..1188 100 -> Plus
2R 9118506..9118672 1189..1355 100 -> Plus
2R 9118739..9118827 1356..1444 100 -> Plus
2R 9118900..9119071 1445..1616 100   Plus
2R 9117917..9118157 713..953 100 -> Plus
2R 9117157..9117852 17..712 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:07 Download gff for BS18055.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5004662..5005357 17..712 100 -> Plus
arm_2R 5005422..5005662 713..953 100 -> Plus
arm_2R 5005720..5005954 954..1188 100 -> Plus
arm_2R 5006011..5006177 1189..1355 100 -> Plus
arm_2R 5006244..5006332 1356..1444 100 -> Plus
arm_2R 5006405..5006576 1445..1616 100   Plus

BS18055.3prime Sequence

890 bp (787 high quality bases) assembled on 2007-06-06

> BS18055.3prime
ATGGTCTAGAAAGCTTTTATTGCAAAAAGGGATCCAACGTACCGGATTGC
TGGGGCTGCTGTGCCGGGGTATAGGCACGTTGGCCGCCACCGCTGCCGTT
CGACGTGGAACTGGCGACGGCTTGCTTGGCGGGCGGACGACGCTTAGCCA
GCGGCATGTCGTCGTCTGAATCGCTTAACGTTAGGTCAACAGTTTCACTG
TTTGACGTTGATGTGGGCTGTTCGTCCTGTGCTGGGGACAAATCCCTCTT
TACTGGCTTGGCGTCATCCGAGATAAGTTCTATGTCATCCGATATAACCT
CAACCTTTTGGGCGGGCTTTGAAGGCGTATCAAGGATCTGCGTCTCGCTC
CGTAGTCCTGGTGTGCTCCAAGATCCATCCTGATGAAGTTGAATCTCAGT
ATCATCACTCTTTAGAAGCGACGAGCCCAACACCTCCTGGAAGTAGCCAT
CTATGACCAGGTTGTCATAAATGGCCGGCTTGTCGCATACAGGGCAGTTC
CACGTGGGCTTACGCTCATTCATTTGCAGGTAGAGACTGGCATCGAAGCA
TTGCAGATGCGAGCAGGTTGATGCTCGACAAGGCAGCAACATTTTCATCT
TGCCCAACGGGCAGTTAAGGGAAACCTTCAGCATAGTGGTGGCTATTTCG
CAGTCAGCATCCTCAGTCAGCTTCTCTTTGATTAAGCCTCGCGTGTAGTC
CGCTGGTTTTACGCCCTTCGTCTTCATTCGCTGCAAAAGCTGTGTTGAGG
TGAGCTTCTTTACCAGGTATACGGCCAGACAGTAGCTACGAGTGTAGTCC
GGACACCACTGAACCGTTATGGTGTTGGTGACGGTAGGCGACAGCTTTAC
ATTGGACGTGACATTAACGGGTCGCGGCGGACGCTTGGGC

BS18055.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8068-PH 1710 Su(var)2-10-RH 837..1710 890..17 4370 100 Minus
CG8068-PF 1602 Su(var)2-10-RF 729..1602 890..17 4370 100 Minus
CG8068-PE 1569 Su(var)2-10-RE 696..1569 890..17 4370 100 Minus
CG8068-PD 1806 Su(var)2-10-RD 837..1686 890..41 4250 100 Minus
CG8068-PC 1698 Su(var)2-10-RC 729..1578 890..41 4250 100 Minus
CG8068-PA 1665 Su(var)2-10-RA 696..1545 890..41 4250 100 Minus
CG8068-PG 1815 Su(var)2-10-RG 729..1576 890..43 4240 100 Minus
CG8068-PB 1782 Su(var)2-10-RB 696..1543 890..43 4240 100 Minus
CG8068-PI 1923 Su(var)2-10-RI 837..1684 890..43 4240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RE 2847 CG8068-RE 942..1815 890..17 4370 100 Minus
Su(var)2-10-RF 2548 CG8068-RF 1268..2141 890..17 4370 100 Minus
Su(var)2-10-RH 2943 CG8068-RH 1038..1911 890..17 4370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9118215..9118449 681..447 1175 100 Minus
2R 25286936 2R 9117949..9118157 890..682 1045 100 Minus
2R 25286936 2R 9118900..9119073 190..17 870 100 Minus
2R 25286936 2R 9118505..9118672 447..280 840 100 Minus
2R 25286936 2R 9118737..9118829 281..189 465 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:08:59 has no hits.

BS18055.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:03:59 Download gff for BS18055.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PH 837..1710 17..890 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:12:24 Download gff for BS18055.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RH 1038..1913 13..890 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:25 Download gff for BS18055.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RH 1038..1913 13..890 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:25 Download gff for BS18055.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9117949..9118157 682..890 100 -> Minus
2R 9118215..9118449 447..681 100 -> Minus
2R 9118506..9118672 280..446 100 -> Minus
2R 9118739..9118827 191..279 100 -> Minus
2R 9118900..9119075 13..190 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:12:24 Download gff for BS18055.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5005454..5005662 682..890 100 -> Minus
arm_2R 5005720..5005954 447..681 100 -> Minus
arm_2R 5006011..5006177 280..446 100 -> Minus
arm_2R 5006244..5006332 191..279 100 -> Minus
arm_2R 5006405..5006580 13..190 98   Minus

BS18055.5prime Sequence

829 bp (803 high quality bases) assembled on 2007-06-06

> BS18055.5prime
GAAGTTATCAGTCGACATGCCATTTCCGTCTCTTCAGGAATGTGAGCAAA
TGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGTCGTTTCTG
AACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCGCATCCTCTC
GTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCCAGGAAGTCT
ACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTACATCGACCCA
ACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCAGCCCAATCC
CGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGGCGGCCAGA
TGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGCATCAACAGC
CAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGCCTTCTACGA
TGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCACGCAACACTC
AGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCGCAGCAGGCC
ACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAAGGTGGAGCA
CGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTCGTGCGACC
AGGAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAACAACAAACTC
TGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGTGGAGCCCAA
GCGTCCGCCGCGACCCGTTAATGTCACGTCCAATGTAAAGCTGTCGCCTA
CCGTCACCAACACCATAACGGTTCAGTGG

BS18055.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8068-PC 1698 Su(var)2-10-RC 1..813 17..829 4065 100 Plus
CG8068-PF 1602 Su(var)2-10-RF 1..813 17..829 4065 100 Plus
CG8068-PG 1815 Su(var)2-10-RG 1..813 17..829 4065 100 Plus
CG8068-PH 1710 Su(var)2-10-RH 128..921 36..829 3970 100 Plus
CG8068-PD 1806 Su(var)2-10-RD 128..921 36..829 3970 100 Plus
CG8068-PI 1923 Su(var)2-10-RI 128..921 36..829 3970 100 Plus
CG8068-PE 1569 Su(var)2-10-RE 1..780 50..829 3900 100 Plus
CG8068-PB 1782 Su(var)2-10-RB 1..780 50..829 3900 100 Plus
CG8068-PA 1665 Su(var)2-10-RA 1..780 50..829 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RK 2632 CG8068-RK 535..1352 12..829 4075 99.9 Plus
Su(var)2-10-RG 2632 CG8068-RG 535..1352 12..829 4075 99.9 Plus
Su(var)2-10-RF 2548 CG8068-RF 535..1352 12..829 4075 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9117152..9117852 12..712 3490 99.9 Plus
2R 25286936 2R 9117917..9118033 713..829 585 100 Plus
Blast to na_te.dros performed 2015-02-10 17:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 6613..6641 748..720 109 86.2 Minus

BS18055.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:04:04 Download gff for BS18055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PC 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:38 Download gff for BS18055.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 530..1352 7..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:24 Download gff for BS18055.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RF 530..1352 7..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:24 Download gff for BS18055.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9117147..9117852 7..712 99 -> Plus
2R 9117917..9118033 713..829 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:38 Download gff for BS18055.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5004652..5005357 7..712 99 -> Plus
arm_2R 5005422..5005538 713..829 100   Plus

BS18055.pep Sequence

Translation from 16 to 1617

> BS18055.pep
MPFPSLQECEQMVQMLRVVELQKILSFLNISFAGRKTDLQSRILSFLRTN
LELLAPKVQEVYAQSVQEQNATLQYIDPTRMYSHIQLPPTVQPNPVGLVG
SGQGVQVPGGQMNVVGGAPFLHTHSINSQLPIHPDVRLKKLAFYDVLGTL
IKPSTLVPRNTQRVQEVPFYFTLTPQQATEIASNRDIRNSSKVEHAIQVQ
LRFCLVETSCDQEDCFPPNVNVKVNNKLCQLPNVIPTNRPNVEPKRPPRP
VNVTSNVKLSPTVTNTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRMKT
KGVKPADYTRGLIKEKLTEDADCEIATTMLKVSLNCPLGKMKMLLPCRAS
TCSHLQCFDASLYLQMNERKPTWNCPVCDKPAIYDNLVIDGYFQEVLGSS
LLKSDDTEIQLHQDGSWSTPGLRSETQILDTPSKPAQKVEVISDDIELIS
DDAKPVKRDLSPAQDEQPTSTSNSETVDLTLSDSDDDMPLAKRRPPAKQA
VASSTSNGSGGGQRAYTPAQQPQQSGTLDPFLQ*

BS18055.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-PF 533 CG8068-PF 1..533 1..533 2778 100 Plus
Su(var)2-10-PH 569 CG8068-PH 36..569 2..533 2743 99.1 Plus
Su(var)2-10-PC 565 CG8068-PC 1..526 1..526 2741 100 Plus
Su(var)2-10-PK 537 CG8068-PK 1..525 1..525 2735 100 Plus
Su(var)2-10-PG 604 CG8068-PG 1..525 1..525 2735 100 Plus