Clone Sequence Records
BS18055.complete Sequence
1634 bp assembled on 2009-12-07
GenBank Submission: KX804603
> BS18055.complete
GAAGTTATCAGTCGACATGCCATTTCCGTCTCTTCAGGAATGTGAGCAAA
TGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGTCGTTTCTG
AACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCGCATCCTCTC
GTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCCAGGAAGTCT
ACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTACATCGACCCA
ACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCAGCCCAATCC
CGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGGCGGCCAGA
TGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGCATCAACAGC
CAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGCCTTCTACGA
TGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCACGCAACACTC
AGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCGCAGCAGGCC
ACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAAGGTGGAGCA
CGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTCGTGCGACC
AGGAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAACAACAAACTC
TGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGTGGAGCCCAA
GCGTCCGCCGCGACCCGTTAATGTCACGTCCAATGTAAAGCTGTCGCCTA
CCGTCACCAACACCATAACGGTTCAGTGGTGTCCGGACTACACTCGTAGC
TACTGTCTGGCCGTATACCTGGTAAAGAAGCTCACCTCAACACAGCTTTT
GCAGCGAATGAAGACGAAGGGCGTAAAACCAGCGGACTACACGCGAGGCT
TAATCAAAGAGAAGCTGACTGAGGATGCTGACTGCGAAATAGCCACCACT
ATGCTGAAGGTTTCCCTTAACTGCCCGTTGGGCAAGATGAAAATGTTGCT
GCCTTGTCGAGCATCAACCTGCTCGCATCTGCAATGCTTCGATGCCAGTC
TCTACCTGCAAATGAATGAGCGTAAGCCCACGTGGAACTGCCCTGTATGC
GACAAGCCGGCCATTTATGACAACCTGGTCATAGATGGCTACTTCCAGGA
GGTGTTGGGCTCGTCGCTTCTAAAGAGTGATGATACTGAGATTCAACTTC
ATCAGGATGGATCTTGGAGCACACCAGGACTACGGAGCGAGACGCAGATC
CTTGATACGCCTTCAAAGCCCGCCCAAAAGGTTGAGGTTATATCGGATGA
CATAGAACTTATCTCGGATGACGCCAAGCCAGTAAAGAGGGATTTGTCCC
CAGCACAGGACGAACAGCCCACATCAACGTCAAACAGTGAAACTGTTGAC
CTAACGTTAAGCGATTCAGACGACGACATGCCGCTGGCTAAGCGTCGTCC
GCCCGCCAAGCAAGCCGTCGCCAGTTCCACGTCGAACGGCAGCGGTGGCG
GCCAACGTGCCTATACCCCGGCACAGCAGCCCCAGCAATCCGGTACGTTG
GATCCCTTTTTGCAATAAAAGCTTTCTAGACCAT
BS18055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RF | 1602 | CG8068-PF | 1..1602 | 17..1618 | 8010 | 100 | Plus |
Su(var)2-10-RH | 1710 | CG8068-PH | 128..1710 | 36..1618 | 7915 | 100 | Plus |
Su(var)2-10-RC | 1698 | CG8068-PC | 1..1578 | 17..1594 | 7890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RF | 2548 | CG8068-RF | 535..2141 | 12..1618 | 8020 | 99.9 | Plus |
Su(var)2-10-RE | 2847 | CG8068-RE | 233..1815 | 36..1618 | 7915 | 100 | Plus |
Su(var)2-10-RH | 2943 | CG8068-RH | 329..1911 | 36..1618 | 7915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9117152..9117852 | 12..712 | 3490 | 99.9 | Plus |
2R | 25286936 | 2R | 9117917..9118157 | 713..953 | 1205 | 100 | Plus |
2R | 25286936 | 2R | 9118215..9118449 | 954..1188 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 9118900..9119073 | 1445..1618 | 870 | 100 | Plus |
2R | 25286936 | 2R | 9118505..9118672 | 1188..1355 | 840 | 100 | Plus |
2R | 25286936 | 2R | 9118737..9118829 | 1354..1446 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:35:39 has no hits.
BS18055.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:17 Download gff for
BS18055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 1..1602 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:42 Download gff for
BS18055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 571..2170 | 17..1616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:07 Download gff for
BS18055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 540..2139 | 17..1616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:17 Download gff for
BS18055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 561..2174 | 7..1622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:16 Download gff for
BS18055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 540..2139 | 17..1616 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:16 Download gff for
BS18055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9118215..9118449 | 954..1188 | 100 | -> | Plus |
2R | 9118506..9118672 | 1189..1355 | 100 | -> | Plus |
2R | 9118739..9118827 | 1356..1444 | 100 | -> | Plus |
2R | 9118900..9119071 | 1445..1616 | 100 | | Plus |
2R | 9117917..9118157 | 713..953 | 100 | -> | Plus |
2R | 9117157..9117852 | 17..712 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:07 Download gff for
BS18055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5004662..5005357 | 17..712 | 100 | -> | Plus |
arm_2R | 5005422..5005662 | 713..953 | 100 | -> | Plus |
arm_2R | 5005720..5005954 | 954..1188 | 100 | -> | Plus |
arm_2R | 5006011..5006177 | 1189..1355 | 100 | -> | Plus |
arm_2R | 5006244..5006332 | 1356..1444 | 100 | -> | Plus |
arm_2R | 5006405..5006576 | 1445..1616 | 100 | | Plus |
BS18055.3prime Sequence
890 bp (787 high quality bases) assembled on 2007-06-06
> BS18055.3prime
ATGGTCTAGAAAGCTTTTATTGCAAAAAGGGATCCAACGTACCGGATTGC
TGGGGCTGCTGTGCCGGGGTATAGGCACGTTGGCCGCCACCGCTGCCGTT
CGACGTGGAACTGGCGACGGCTTGCTTGGCGGGCGGACGACGCTTAGCCA
GCGGCATGTCGTCGTCTGAATCGCTTAACGTTAGGTCAACAGTTTCACTG
TTTGACGTTGATGTGGGCTGTTCGTCCTGTGCTGGGGACAAATCCCTCTT
TACTGGCTTGGCGTCATCCGAGATAAGTTCTATGTCATCCGATATAACCT
CAACCTTTTGGGCGGGCTTTGAAGGCGTATCAAGGATCTGCGTCTCGCTC
CGTAGTCCTGGTGTGCTCCAAGATCCATCCTGATGAAGTTGAATCTCAGT
ATCATCACTCTTTAGAAGCGACGAGCCCAACACCTCCTGGAAGTAGCCAT
CTATGACCAGGTTGTCATAAATGGCCGGCTTGTCGCATACAGGGCAGTTC
CACGTGGGCTTACGCTCATTCATTTGCAGGTAGAGACTGGCATCGAAGCA
TTGCAGATGCGAGCAGGTTGATGCTCGACAAGGCAGCAACATTTTCATCT
TGCCCAACGGGCAGTTAAGGGAAACCTTCAGCATAGTGGTGGCTATTTCG
CAGTCAGCATCCTCAGTCAGCTTCTCTTTGATTAAGCCTCGCGTGTAGTC
CGCTGGTTTTACGCCCTTCGTCTTCATTCGCTGCAAAAGCTGTGTTGAGG
TGAGCTTCTTTACCAGGTATACGGCCAGACAGTAGCTACGAGTGTAGTCC
GGACACCACTGAACCGTTATGGTGTTGGTGACGGTAGGCGACAGCTTTAC
ATTGGACGTGACATTAACGGGTCGCGGCGGACGCTTGGGC
BS18055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8068-PH | 1710 | Su(var)2-10-RH | 837..1710 | 890..17 | 4370 | 100 | Minus |
CG8068-PF | 1602 | Su(var)2-10-RF | 729..1602 | 890..17 | 4370 | 100 | Minus |
CG8068-PE | 1569 | Su(var)2-10-RE | 696..1569 | 890..17 | 4370 | 100 | Minus |
CG8068-PD | 1806 | Su(var)2-10-RD | 837..1686 | 890..41 | 4250 | 100 | Minus |
CG8068-PC | 1698 | Su(var)2-10-RC | 729..1578 | 890..41 | 4250 | 100 | Minus |
CG8068-PA | 1665 | Su(var)2-10-RA | 696..1545 | 890..41 | 4250 | 100 | Minus |
CG8068-PG | 1815 | Su(var)2-10-RG | 729..1576 | 890..43 | 4240 | 100 | Minus |
CG8068-PB | 1782 | Su(var)2-10-RB | 696..1543 | 890..43 | 4240 | 100 | Minus |
CG8068-PI | 1923 | Su(var)2-10-RI | 837..1684 | 890..43 | 4240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RE | 2847 | CG8068-RE | 942..1815 | 890..17 | 4370 | 100 | Minus |
Su(var)2-10-RF | 2548 | CG8068-RF | 1268..2141 | 890..17 | 4370 | 100 | Minus |
Su(var)2-10-RH | 2943 | CG8068-RH | 1038..1911 | 890..17 | 4370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9118215..9118449 | 681..447 | 1175 | 100 | Minus |
2R | 25286936 | 2R | 9117949..9118157 | 890..682 | 1045 | 100 | Minus |
2R | 25286936 | 2R | 9118900..9119073 | 190..17 | 870 | 100 | Minus |
2R | 25286936 | 2R | 9118505..9118672 | 447..280 | 840 | 100 | Minus |
2R | 25286936 | 2R | 9118737..9118829 | 281..189 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:08:59 has no hits.
BS18055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:03:59 Download gff for
BS18055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8068-PH | 837..1710 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:12:24 Download gff for
BS18055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RH | 1038..1913 | 13..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:25 Download gff for
BS18055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RH | 1038..1913 | 13..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:25 Download gff for
BS18055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9117949..9118157 | 682..890 | 100 | -> | Minus |
2R | 9118215..9118449 | 447..681 | 100 | -> | Minus |
2R | 9118506..9118672 | 280..446 | 100 | -> | Minus |
2R | 9118739..9118827 | 191..279 | 100 | -> | Minus |
2R | 9118900..9119075 | 13..190 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:12:24 Download gff for
BS18055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5005454..5005662 | 682..890 | 100 | -> | Minus |
arm_2R | 5005720..5005954 | 447..681 | 100 | -> | Minus |
arm_2R | 5006011..5006177 | 280..446 | 100 | -> | Minus |
arm_2R | 5006244..5006332 | 191..279 | 100 | -> | Minus |
arm_2R | 5006405..5006580 | 13..190 | 98 | | Minus |
BS18055.5prime Sequence
829 bp (803 high quality bases) assembled on 2007-06-06
> BS18055.5prime
GAAGTTATCAGTCGACATGCCATTTCCGTCTCTTCAGGAATGTGAGCAAA
TGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGTCGTTTCTG
AACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCGCATCCTCTC
GTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCCAGGAAGTCT
ACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTACATCGACCCA
ACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCAGCCCAATCC
CGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGGCGGCCAGA
TGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGCATCAACAGC
CAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGCCTTCTACGA
TGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCACGCAACACTC
AGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCGCAGCAGGCC
ACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAAGGTGGAGCA
CGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTCGTGCGACC
AGGAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAACAACAAACTC
TGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGTGGAGCCCAA
GCGTCCGCCGCGACCCGTTAATGTCACGTCCAATGTAAAGCTGTCGCCTA
CCGTCACCAACACCATAACGGTTCAGTGG
BS18055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8068-PC | 1698 | Su(var)2-10-RC | 1..813 | 17..829 | 4065 | 100 | Plus |
CG8068-PF | 1602 | Su(var)2-10-RF | 1..813 | 17..829 | 4065 | 100 | Plus |
CG8068-PG | 1815 | Su(var)2-10-RG | 1..813 | 17..829 | 4065 | 100 | Plus |
CG8068-PH | 1710 | Su(var)2-10-RH | 128..921 | 36..829 | 3970 | 100 | Plus |
CG8068-PD | 1806 | Su(var)2-10-RD | 128..921 | 36..829 | 3970 | 100 | Plus |
CG8068-PI | 1923 | Su(var)2-10-RI | 128..921 | 36..829 | 3970 | 100 | Plus |
CG8068-PE | 1569 | Su(var)2-10-RE | 1..780 | 50..829 | 3900 | 100 | Plus |
CG8068-PB | 1782 | Su(var)2-10-RB | 1..780 | 50..829 | 3900 | 100 | Plus |
CG8068-PA | 1665 | Su(var)2-10-RA | 1..780 | 50..829 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-RK | 2632 | CG8068-RK | 535..1352 | 12..829 | 4075 | 99.9 | Plus |
Su(var)2-10-RG | 2632 | CG8068-RG | 535..1352 | 12..829 | 4075 | 99.9 | Plus |
Su(var)2-10-RF | 2548 | CG8068-RF | 535..1352 | 12..829 | 4075 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9117152..9117852 | 12..712 | 3490 | 99.9 | Plus |
2R | 25286936 | 2R | 9117917..9118033 | 713..829 | 585 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 17:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 6613..6641 | 748..720 | 109 | 86.2 | Minus |
BS18055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:04:04 Download gff for
BS18055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8068-PC | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:40:38 Download gff for
BS18055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 530..1352 | 7..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:24 Download gff for
BS18055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-10-RF | 530..1352 | 7..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:24 Download gff for
BS18055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9117147..9117852 | 7..712 | 99 | -> | Plus |
2R | 9117917..9118033 | 713..829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:40:38 Download gff for
BS18055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5004652..5005357 | 7..712 | 99 | -> | Plus |
arm_2R | 5005422..5005538 | 713..829 | 100 | | Plus |
BS18055.pep Sequence
Translation from 16 to 1617
> BS18055.pep
MPFPSLQECEQMVQMLRVVELQKILSFLNISFAGRKTDLQSRILSFLRTN
LELLAPKVQEVYAQSVQEQNATLQYIDPTRMYSHIQLPPTVQPNPVGLVG
SGQGVQVPGGQMNVVGGAPFLHTHSINSQLPIHPDVRLKKLAFYDVLGTL
IKPSTLVPRNTQRVQEVPFYFTLTPQQATEIASNRDIRNSSKVEHAIQVQ
LRFCLVETSCDQEDCFPPNVNVKVNNKLCQLPNVIPTNRPNVEPKRPPRP
VNVTSNVKLSPTVTNTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRMKT
KGVKPADYTRGLIKEKLTEDADCEIATTMLKVSLNCPLGKMKMLLPCRAS
TCSHLQCFDASLYLQMNERKPTWNCPVCDKPAIYDNLVIDGYFQEVLGSS
LLKSDDTEIQLHQDGSWSTPGLRSETQILDTPSKPAQKVEVISDDIELIS
DDAKPVKRDLSPAQDEQPTSTSNSETVDLTLSDSDDDMPLAKRRPPAKQA
VASSTSNGSGGGQRAYTPAQQPQQSGTLDPFLQ*
BS18055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:57:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-10-PF | 533 | CG8068-PF | 1..533 | 1..533 | 2778 | 100 | Plus |
Su(var)2-10-PH | 569 | CG8068-PH | 36..569 | 2..533 | 2743 | 99.1 | Plus |
Su(var)2-10-PC | 565 | CG8068-PC | 1..526 | 1..526 | 2741 | 100 | Plus |
Su(var)2-10-PK | 537 | CG8068-PK | 1..525 | 1..525 | 2735 | 100 | Plus |
Su(var)2-10-PG | 604 | CG8068-PG | 1..525 | 1..525 | 2735 | 100 | Plus |