Clone Sequence Records
BS18056.complete Sequence
1538 bp assembled on 2009-12-08
GenBank Submission: KX803860
> BS18056.complete
GAAGTTATCAGTCGACATGGCTGCCCTACAACGGAAGCTGGTGCACAAGC
AGTTCAACTCGCCCATGGGCCTCTATTCCCAGGAGAACGTGAAGGCCACA
TTGAACCGCGAGCTGAAAGCCTTCGGCGGCGAGGGGATTGAAGTCGACGA
TCAAATAACGAAGCCCCTGAACTTGGCCAACTCGGCCGTTCTGCGCGCCG
TCGAAGAGGAAGAACAACAAGCCAAATGTGGCTACAAGCGTGTGGCCTGG
CCACCGGCCTCCGAGGAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCA
GACTCAGAGTCCGGCTCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACG
CTCCCACAGCAGCAGCTGCCGCTCCACCTCAGGGTCCCATTTATAACAAC
GTCCAGCCACGCACCACCCAAACACCACAAAATGCCTACCCATCGGCACC
ACAAACCACCAGCACCGCCTACCCCACCAACCAGTACCCAGATAGTTATT
CGCATCAGGAGCAGCAGCAGCAACAGCAGCAACAGCAGCCTGTGCAGTAC
ACACAGGCGCAGTTCGGTCGGCAACGCTCGAGGGAACCCGTCCAGGTTTC
AGCTCCATCTCCAGCTCCCGCAACCGATCCCAGCGGTTATCCATACCAGG
CTAACTATCAGTCCAACTATCCGCAGGAGCCGCTGCAGGCAGTGAACAAT
GTGGGTGGTGGCTGGAAACACATTGGTGCTCCGCAGCCTAAGTCACGCAG
TGAATTCACCGCCGGCAATGGAGCCTATCCCCCGTTCCAGGGATCCTACC
AGCAGCAACAACAGCAGCCGCAGCAGCAGTACGGTGCTCCGTCTTACGAT
GGCCAGCAGCCTGGAGCACAGTGGCAACAGCAACAGCAGCAGCAGCAGGT
TCCGCAGCAGCAGTATCAGCCTCAATCGCAGGCTCAGGCGCCCTATCAGC
CACCACAGTGGAACCAGCCGCAGCAGCAGCAGCAGCAGCCATCGTACCAG
GCTTCACCGTACCAACAGCAGCAACAGCAACAGCCATCCTATTACCCACA
GCAAAATGGTGGCTCGACCTATGCTCAACCCCCATACAATTCTTATTCGC
AGCCCCAGTTGCCCTACTCGCAGGATCAGACTGATCTGCAGCAGCAGCAA
CAACAGCAGCAGCAGCAGTATCCGGGAGCCTACGCTGGCCAGGATAGCTA
CCGGGGCGCCAGTCCCGGCATCATCACCCTGCGCAAGGAGGCTCCAGTCA
GCCAGAAGCCTGCACCAGTCTACACTTCGCAGCCAGCCGCCGTCAGTTAT
CAGGGAGGCAGCAAATTGCGCGGAGATTTGAAATGGCCACCACCGGAGTA
CAAGGAGGCCGCGGCTCGCGAGAACGAGGAACGACGCCAGTTGGCGTTGG
GTCCCGTCTGCCGTCCCAGGAGAGTTAACCGGGACTACACACCCTTCTTT
GCCAAGCACCAGTTGAACAATGGCTATCCCAGCTACAAGGTGCCTCCGGG
CACCCAGCACATTTTCGGCTAAAAGCTTTCTAGACCAT
BS18056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RJ | 1506 | CG43897-PJ | 1..1506 | 17..1522 | 7530 | 100 | Plus |
| CG43897-RC | 1506 | CG43897-PC | 1..1506 | 17..1522 | 7530 | 100 | Plus |
| CG43897-RB | 1506 | CG43897-PB | 1..1506 | 17..1522 | 7530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RJ | 3076 | CG43897-RJ | 243..1748 | 17..1522 | 7530 | 100 | Plus |
| CG43897-RC | 3497 | CG43897-RC | 664..2169 | 17..1522 | 7530 | 100 | Plus |
| CG43897-RB | 3240 | CG43897-RB | 407..1912 | 17..1522 | 7530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9832195..9832680 | 820..1305 | 2430 | 100 | Plus |
| 3L | 28110227 | 3L | 9830996..9831440 | 379..823 | 2225 | 100 | Plus |
| 3L | 28110227 | 3L | 9830633..9830786 | 230..383 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 9832738..9832867 | 1304..1433 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 9820441..9820560 | 17..136 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 9824545..9824641 | 135..231 | 485 | 100 | Plus |
| 3L | 28110227 | 3L | 9832927..9833017 | 1432..1522 | 455 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7078 | 797..1168 | 310 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6923 | 798..983 | 284 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2662 | 798..1167 | 283 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..7009 | 798..1036 | 272 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2673 | 798..1160 | 233 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2395..2930 | 798..1314 | 224 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2905 | 462..1056 | 215 | 53.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..3034 | 798..1032 | 215 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2548 | 798..1002 | 205 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..7054 | 798..1054 | 199 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..7077 | 798..1053 | 187 | 57.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1163 | 801..893 | 141 | 61.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1113..1146 | 798..831 | 134 | 88.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1587 | 796..827 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1567 | 800..828 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1546 | 799..828 | 114 | 86.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 935..1037 | 743..844 | 114 | 64.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 151..176 | 796..821 | 112 | 92.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9181..9206 | 796..821 | 112 | 92.3 | Plus |
BS18056.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:30 Download gff for
BS18056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RC | 656..2159 | 17..1520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:07 Download gff for
BS18056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RB | 407..1910 | 17..1520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:00 Download gff for
BS18056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RC | 656..2159 | 17..1520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:50 Download gff for
BS18056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RB | 407..1910 | 17..1520 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:50 Download gff for
BS18056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9820441..9820559 | 17..135 | 100 | -> | Plus |
| 3L | 9824546..9824640 | 136..230 | 100 | -> | Plus |
| 3L | 9830634..9830785 | 231..382 | 100 | -> | Plus |
| 3L | 9831000..9831440 | 383..823 | 100 | -> | Plus |
| 3L | 9832199..9832679 | 824..1304 | 100 | -> | Plus |
| 3L | 9832739..9832866 | 1305..1432 | 100 | -> | Plus |
| 3L | 9832928..9833015 | 1433..1520 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:07 Download gff for
BS18056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9826028..9826115 | 1433..1520 | 100 | | Plus |
| arm_3L | 9813541..9813659 | 17..135 | 100 | -> | Plus |
| arm_3L | 9817646..9817740 | 136..230 | 100 | -> | Plus |
| arm_3L | 9823734..9823885 | 231..382 | 100 | -> | Plus |
| arm_3L | 9824100..9824540 | 383..823 | 100 | -> | Plus |
| arm_3L | 9825299..9825779 | 824..1304 | 100 | -> | Plus |
| arm_3L | 9825839..9825966 | 1305..1432 | 100 | -> | Plus |
BS18056.3prime Sequence
930 bp (711 high quality bases) assembled on 2007-06-06
> BS18056.3prime
CCTAAGAGGGGCGCCAACGAATGGTCTANAAAGCTTTTANCCCAAAATGT
GCTGGGTGCCCGGAGGCACCTTGTAGCTGGGATAGCCATTGTTCAACTGG
TGCTTGGCAAAGAAGGGTGTGTAGTCCCGGTTAACTCTCCTGGGACGGCA
GACGGGACCCAACGCCAACTGGCGTCGTTCCTCGTTCTCGCGAGCCGCGG
CCTCCTTGTACTCCGGTGGTGGCCATTTCAAATCTCCGCGCAATTTGCTG
CCTCCCTGATAACTGACGGCGGCTGGCTGCGAAGTGTAGACTGGTGCAGG
CTTCTGGCTGACTGGAGCCTCCTTGCGCAGGGTGATGATGCCGGGACTGG
CGCCCCGGTAGCTATCCTGGCCAGCGTAGGCTCCCGGATACTGCTGCTGC
TGCTGTTGTTGCTGCTGCTGCAGATCAGTCTGATCCTGCGAGTAGGGCAA
CTGGGGCTGCGAATAAGAATTGTATGGGGGTTGAGCATAGGTCGAGCCAC
CATTTTGCTGTGGGTAATAGGATGGCTGTTGCTGTTGCTGCTGTTGGTAC
GGTGAAGCCTGGTACGATGGCTGCTGCTGCTGCTGCTGCGGCTGGTTCCA
CTGTGGTGGCTGATAGGGCGCCTGAGCCTGCGATTGAGGCTGATACTGCT
GCTGCGGAACCTGCTGCTGCTGCTGTTGCTGTTGCCACTGTGCTCCAGGC
TGCTGGCCATCGTAAGACGGAGCACCGTACTGCTGCTGCGGCTGCTGTTG
TTGCTGCTGGTAGGATCCCTGGAACGGGGGATAGGCTCCATTGCCGGCGG
TGAATTCACTGCGTGACTTANGCTGCGGAGCACCAATGTGTTTCCAGCCA
CCACCCACATTGTTCACTGCCTGCAACGGCTCCTGCGGATAGTTGGACTG
ATAGTTAGCCTGTAATGGATAACCGCTGGG
BS18056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33205-PB | 1506 | CG33205-RB | 613..1499 | 930..44 | 4341 | 99.5 | Minus |
| CG33205-PC | 1506 | CG33205-RC | 613..1499 | 930..44 | 4341 | 99.5 | Minus |
| CG33205-PA | 1389 | CG33205-RA | 496..1382 | 930..44 | 4341 | 99.5 | Minus |
| CG33205-PH | 1068 | CG33205-RH | 366..1061 | 739..44 | 3480 | 100 | Minus |
| CG33205-PE | 948 | CG33205-RE | 247..941 | 738..44 | 3475 | 100 | Minus |
| CG33205-PF | 1065 | CG33205-RF | 364..1058 | 738..44 | 3475 | 100 | Minus |
| CG33205-PG | 1065 | CG33205-RG | 364..1058 | 738..44 | 3475 | 100 | Minus |
| CG33205-PI | 621 | CG33205-RI | 199..614 | 459..44 | 2080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RR | 3268 | CG43897-RR | 1047..1940 | 930..37 | 4388 | 99.3 | Minus |
| CG43897-RJ | 3076 | CG43897-RJ | 855..1748 | 930..37 | 4388 | 99.3 | Minus |
| CG43897-RA | 2956 | CG43897-RA | 735..1628 | 930..37 | 4388 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9832195..9832680 | 739..254 | 2430 | 100 | Minus |
| 3L | 28110227 | 3L | 9831246..9831440 | 930..736 | 919 | 97.9 | Minus |
| 3L | 28110227 | 3L | 9832738..9832867 | 255..126 | 650 | 100 | Minus |
| 3L | 28110227 | 3L | 9832927..9833017 | 127..37 | 429 | 97.8 | Minus |
Blast to na_te.dros performed 2015-02-05 14:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7078 | 762..391 | 310 | 57.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6923 | 761..576 | 284 | 62.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2662 | 761..392 | 283 | 56.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..7009 | 761..523 | 272 | 59.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2673 | 761..399 | 233 | 57.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2395..2930 | 761..245 | 224 | 56.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..3034 | 761..527 | 215 | 59 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2548 | 761..557 | 205 | 59 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..7054 | 761..505 | 199 | 58.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2837 | 759..391 | 194 | 56.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..7077 | 761..506 | 187 | 57.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2635..2905 | 761..503 | 164 | 57.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1163 | 758..666 | 141 | 61.3 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1113..1146 | 761..728 | 134 | 88.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2718..2826 | 635..525 | 126 | 61.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1587 | 763..732 | 124 | 87.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1567 | 759..731 | 118 | 89.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1546 | 760..731 | 114 | 86.7 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 935..1037 | 816..715 | 114 | 64.2 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 151..176 | 763..738 | 112 | 92.3 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9181..9206 | 763..738 | 112 | 92.3 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7962..7997 | 761..726 | 108 | 77.8 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9406..9441 | 761..726 | 108 | 77.8 | Minus |
BS18056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:04:09 Download gff for
BS18056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-PA | 496..1389 | 37..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:51 Download gff for
BS18056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RA | 735..1632 | 30..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:17:28 Download gff for
BS18056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RA | 735..1632 | 30..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:17:28 Download gff for
BS18056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9831246..9831440 | 736..930 | 97 | -> | Minus |
| 3L | 9832199..9832679 | 255..735 | 100 | -> | Minus |
| 3L | 9832739..9832866 | 127..254 | 100 | -> | Minus |
| 3L | 9832928..9833021 | 30..126 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:51 Download gff for
BS18056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9826028..9826121 | 30..126 | 94 | | Minus |
| arm_3L | 9824346..9824540 | 736..930 | 97 | -> | Minus |
| arm_3L | 9825299..9825779 | 255..735 | 100 | -> | Minus |
| arm_3L | 9825839..9825966 | 127..254 | 100 | -> | Minus |
BS18056.5prime Sequence
795 bp (768 high quality bases) assembled on 2007-06-06
> BS18056.5prime
GAAGTTATCCCTCGAGGTGGCTGCCCTACAACGGAAGCTGGTGCACAAGC
AGTTCAACTCGCCCATGGGCCTCTATTCCCAGGAGAACGTGAAGGCCACA
TTGAACCGCGAGCTGAAAGCCTTCGGCGGCGAGGGGATTGAAGTCGACGA
TCAAATAACGAAGCCCCTGAACTTGGCCAACTCGGCCGTTCTGCGCGCCG
TCGAAGAGGAAGAACAACAAGCCAAATGTGGCTACAAGCGTGTGGCCTGG
CCACCGGCCTCCGAGGAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCA
GACTCAGAGTCCGGCTCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACG
CTCCCACAGCAGCAGCTGCCGCTCCACCTCAGGGTCCCATTTATAACAAC
GTCCAGCCACGCACCACCCAAACACCACAAAATGCCTACCCATCGGCACC
ACAAACCACCAGCACCGCCTACCCCACCAACCAGTACCCAGATAGTTATT
CGCATCAGGAGCAGCAGCAGCAACAGCAGCAACAGCAGCCTGTGCAGTAC
ACACAGGCGCAGTTCGGTCGGCAACGCTCGAGGGAACCCGTCCAGGTTTC
AGCTCCATCTCCAGCTCCCGCAACCGATCCCAGCGGTTATCCATACCAGG
CTAACTATCAGTCCAACTATCCGCAGGAGCCGCTGCAGGCAGTGAACAAT
GTGGGTGGTGGCTGGAAACACATTGGTGCTCCGCAGCCTAAGTCACGCAG
TGAATTCACCGCCGGCAATGGAGCCTATCCCCCGTTCCAGGGATC
BS18056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33205-PB | 1506 | CG33205-RB | 2..779 | 18..795 | 3890 | 100 | Plus |
| CG33205-PC | 1506 | CG33205-RC | 2..779 | 18..795 | 3890 | 100 | Plus |
| CG33205-PA | 1389 | CG33205-RA | 3..662 | 136..795 | 3300 | 100 | Plus |
| CG33205-PF | 1065 | CG33205-RF | 2..366 | 18..382 | 1825 | 100 | Plus |
| CG33205-PG | 1065 | CG33205-RG | 2..366 | 18..382 | 1825 | 100 | Plus |
| CG33205-PH | 1068 | CG33205-RH | 2..366 | 18..382 | 1825 | 100 | Plus |
| CG33205-PE | 948 | CG33205-RE | 3..249 | 136..382 | 1235 | 100 | Plus |
| CG33205-PI | 621 | CG33205-RI | 49..201 | 230..382 | 765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 14:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RL | 3107 | CG43897-RL | 278..1055 | 18..795 | 3890 | 100 | Plus |
| CG43897-RK | 3074 | CG43897-RK | 239..1016 | 18..795 | 3890 | 100 | Plus |
| CG43897-RJ | 3076 | CG43897-RJ | 244..1021 | 18..795 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 14:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9830996..9831412 | 379..795 | 2085 | 100 | Plus |
| 3L | 28110227 | 3L | 9830633..9830786 | 230..383 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 9820442..9820560 | 18..136 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 9824545..9824641 | 135..231 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 14:10:33 has no hits.
BS18056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:04:14 Download gff for
BS18056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-PC | 2..779 | 18..795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:54 Download gff for
BS18056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RJ | 244..1021 | 18..795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 16:17:40 Download gff for
BS18056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RJ | 244..1021 | 18..795 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 16:17:40 Download gff for
BS18056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9831000..9831412 | 383..795 | 100 | | Plus |
| 3L | 9820442..9820559 | 18..135 | 100 | -> | Plus |
| 3L | 9824546..9824640 | 136..230 | 100 | -> | Plus |
| 3L | 9830634..9830785 | 231..382 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:54 Download gff for
BS18056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9813542..9813659 | 18..135 | 100 | -> | Plus |
| arm_3L | 9817646..9817740 | 136..230 | 100 | -> | Plus |
| arm_3L | 9823734..9823885 | 231..382 | 100 | -> | Plus |
| arm_3L | 9824100..9824512 | 383..795 | 100 | | Plus |
BS18056.pep Sequence
Translation from 16 to 1521
> BS18056.pep
MAALQRKLVHKQFNSPMGLYSQENVKATLNRELKAFGGEGIEVDDQITKP
LNLANSAVLRAVEEEEQQAKCGYKRVAWPPASEERIIREFTPQPQTQSPA
PGAGGYYPQAHAPTAAAAAPPQGPIYNNVQPRTTQTPQNAYPSAPQTTST
AYPTNQYPDSYSHQEQQQQQQQQQPVQYTQAQFGRQRSREPVQVSAPSPA
PATDPSGYPYQANYQSNYPQEPLQAVNNVGGGWKHIGAPQPKSRSEFTAG
NGAYPPFQGSYQQQQQQPQQQYGAPSYDGQQPGAQWQQQQQQQQVPQQQY
QPQSQAQAPYQPPQWNQPQQQQQQPSYQASPYQQQQQQQPSYYPQQNGGS
TYAQPPYNSYSQPQLPYSQDQTDLQQQQQQQQQQYPGAYAGQDSYRGASP
GIITLRKEAPVSQKPAPVYTSQPAAVSYQGGSKLRGDLKWPPPEYKEAAA
RENEERRQLALGPVCRPRRVNRDYTPFFAKHQLNNGYPSYKVPPGTQHIF
G*
BS18056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-PJ | 501 | CG43897-PJ | 1..501 | 1..501 | 2710 | 100 | Plus |
| CG43897-PC | 501 | CG43897-PC | 1..501 | 1..501 | 2710 | 100 | Plus |
| CG43897-PB | 501 | CG43897-PB | 1..501 | 1..501 | 2710 | 100 | Plus |
| CG43897-PK | 502 | CG43897-PK | 1..502 | 1..501 | 2698 | 99.8 | Plus |
| CG43897-PL | 500 | CG43897-PL | 1..500 | 1..501 | 2693 | 99.8 | Plus |
