Clone Sequence Records
BS18058.complete Sequence
1358 bp assembled on 2009-12-07
GenBank Submission: KX802919
> BS18058.complete
GAAGTTATCAGTCGACATGTTCATTTTTCCCATACTGTTTGTTCAAATCG
TGATTTCTAATGTCATAAGGAGTCTCAAGCGCCGTCTCGCAAAGCCGCTG
AAAATGTCCGAGGACCTGGACGAGCTCTTCCTGACGCCCATTCCGGCGCC
CTCGGCCGTGGAGCTGCAGCAGTGCATACTGTTCGGCTTCCGGCGCCGCC
TTCATCCCGCCCAGATATTCGAGGAGTGCCGCAACGCCTTTGGGCCCTTC
TGCCCCAGTGCGCAGTACGTGGCGAAGTGGTACCAGCGGTTCCAGGACGG
CTTCTTCAATCTGGACGAGAAGGACGACGAGGAGCTGAGGATCGGGCATG
GCGGCACGCCCACCACCTGCAGTGATTACGATGATGACAGTGATTGCGGG
GAGGCGACCGTTCTGCCCCTGATCCTAAGTGAAATGATCCAACGCAGTGA
GGAGGATGACGATGATGATGGTACTGATGGTTTTGAGAAGGAGAGTGATG
ATGGTCTAGATGGTCATGTGATTGGTTATTGGCAGGGTTATGGCTATTTG
GGTGGCAAGCAAAGGTATAGTTGGGCTGGAACTAAACTTGGAAACTCGGC
TTGCGAGCTGCCCCCGCTGCCGAAATCTCTCATCGGCTTCAACAAGTTAC
TGTGCTCCGATTCGGGACTCCTGAGTGATGTGGAAGGAAACAATAACAGC
AGCGATGGCAGCCGAAAACCAAACGACAATCTTGCTGTGGAGACACAGGA
TACCAAGGAGCATGCCACCGATAAGTCACTGCCCTCCTCGCCGAACGGAA
ACACATCCATACCACCAATGCTGGTGGCCAAATCCGAGGCCAAGTCCCCC
AGCTTATCCGCCAAAGGAAACCCCCAGGCGGTCGAGGCGGGCAGCACTCT
GGATGCCCAGATTGCGACGCTGCGGAAGGAAATGAACGGACTGCGTCAAC
TAGATCTCTCGTTGCTGTCACAACTGTGGGTGCTTAACGAATCGATCCAA
GAGTTCCGCGCCCTGATCGAAGATCAGGAGAACGAGGATGAGGACGACGA
GGTGGAGGTGGAGGTGGGAAACGAGCTGGACGAGGAGGGCAACAGCCGGG
TGTCCTCGTCCATCGAGTCGGTGCGATTGGAGGGCGGTGCTGATGGCACG
TCGAAGCATCTGGGAACCATACCAAAGGTCATAACGACGCAGCCAAAGGT
GCTGAGGGACTCACTGGCCACGGCCAGCAAGGACCAGAAGCCGGTGCCCA
GGATGCGGAGTGCCCCGCCACCGCCACCTCCCGCCGTGCTGCAATCCTTG
TCCCTGGAGCGAAAACCGCCGGCTCCGTCACGACCCACATGAAAGCTTTC
TAGACCAT
BS18058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-RC | 1326 | CG31038-PC | 1..1326 | 17..1342 | 6630 | 100 | Plus |
CG31038-RG | 1239 | CG31038-PG | 1..1239 | 104..1342 | 6195 | 100 | Plus |
CG31038-RH | 1302 | CG31038-PH | 549..1302 | 589..1342 | 3770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-RC | 2039 | CG31038-RC | 74..1399 | 17..1342 | 6630 | 100 | Plus |
CG31038-RG | 2369 | CG31038-RG | 443..1729 | 56..1342 | 6435 | 100 | Plus |
CG31038-RH | 2015 | CG31038-RH | 622..1375 | 589..1342 | 3770 | 100 | Plus |
CG31038-RG | 2369 | CG31038-RG | 74..113 | 17..56 | 200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29896698..29897229 | 57..588 | 2660 | 100 | Plus |
3R | 32079331 | 3R | 29902183..29902591 | 934..1342 | 2045 | 100 | Plus |
3R | 32079331 | 3R | 29897300..29897645 | 589..934 | 1730 | 100 | Plus |
3R | 32079331 | 3R | 29895054..29895093 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:48:59 has no hits.
BS18058.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:42 Download gff for
BS18058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 77..1396 | 22..1341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:38 Download gff for
BS18058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 79..1398 | 22..1341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:16 Download gff for
BS18058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 77..1396 | 22..1341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:31 Download gff for
BS18058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 79..1398 | 22..1341 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:31 Download gff for
BS18058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29897300..29897645 | 589..934 | 100 | -> | Plus |
3R | 29895059..29895093 | 22..56 | 100 | -> | Plus |
3R | 29896698..29897229 | 57..588 | 100 | -> | Plus |
3R | 29902184..29902590 | 935..1341 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:38 Download gff for
BS18058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25720781..25720815 | 22..56 | 100 | -> | Plus |
arm_3R | 25722420..25722951 | 57..588 | 100 | -> | Plus |
arm_3R | 25723022..25723367 | 589..934 | 100 | -> | Plus |
arm_3R | 25727906..25728312 | 935..1341 | 100 | | Plus |
BS18058.3prime Sequence
896 bp (815 high quality bases) assembled on 2007-06-06
> BS18058.3prime
ATGGTCTAGAAAGCTTTCATGCGGGTCGTGACGGAGCCGGCGGTTTTCGC
TCCAGGGACAAGGATTGCAGCACGGCGGGAGGTGGCGGTGGCGGGGCACT
CCGCATCCTGGGCACCGGCTTCTGGTCCTTGCTGGCCGTGGCCAGTGAGT
CCCTCAGCACCTTTGGCTGCGTCGTTATGACCTTTGGTATGGTTCCCAGA
TGCTTCGACGTGCCATCAGCACCGCCCTCCAATCGCACCGACTCGATGGA
CGAGGACACCCGGCTGTTGCCCTCCTCGTCCAGCTCGTTTCCCACCTCCA
CCTCCACCTCGTCGTCCTCATCCTCGTTCTCCTGATCTTCGATCAGGGCG
CGGAACTCTTGGATCGATTCGTTAAGCACCCACAGTTGTGACAGCAACGA
GAGATCTAGTTGACGCAGTCCGTTCATTTCCTTCCGCAGCGTCGCAATCT
GGGCATCCAGAGTGCTGCCCGCCTCGACCGCCTGGGGGTTTCCTTTGGCG
GATAAGCTGGGGGACTTGGCCTCGGATTTGGCCACCAGCATTGGTGGTAT
GGATGTGTTTCCGTTCGGCGAGGAGGGCAGTGACTTATCGGTGGCATGCT
CCTTGGTATCCTGTGTCTCCACAGCAAGATTGTCGTTTGGTTTTCGGCTG
CCATCGCTGCTGTTATTGTTTCCTTCCACATCACTCAGGAGTCCCGAATC
GGAGCACAGTAACTTGTTGAAGCCGATGAGAGATTTCGGCAGCGGGGGCA
GCTCGCAAGCCGAGTTTCCAAGTTTAGTTCCAGCCCAACTATACCTTTGC
TTGCCACCCAAATAGCCATAACCCTGCCAATAACCAATCACATGACCATC
TAGACCATCATCACTCTCCTTCTCAAAACCATCAGTACCATCATCA
BS18058.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-PC | 1326 | CG31038-RC | 447..1326 | 896..17 | 4375 | 99.8 | Minus |
CG31038-PF | 2193 | CG31038-RF | 1440..2193 | 770..17 | 3745 | 99.8 | Minus |
CG31038-PA | 2193 | CG31038-RA | 1440..2193 | 770..17 | 3745 | 99.8 | Minus |
CG31038-PE | 2193 | CG31038-RE | 1440..2193 | 770..17 | 3745 | 99.8 | Minus |
CG31038-PB | 1818 | CG31038-RB | 1440..1785 | 770..425 | 1730 | 100 | Minus |
CG31038-PD | 1818 | CG31038-RD | 1440..1785 | 770..425 | 1730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-RG | 2369 | CG31038-RG | 850..1729 | 896..17 | 4385 | 99.9 | Minus |
CG31038-RC | 2039 | CG31038-RC | 520..1399 | 896..17 | 4385 | 99.9 | Minus |
CG31038-RH | 2015 | CG31038-RH | 520..1375 | 896..17 | 4015 | 97.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29902183..29902591 | 425..17 | 2030 | 99.8 | Minus |
3R | 32079331 | 3R | 29897300..29897645 | 770..425 | 1730 | 100 | Minus |
3R | 32079331 | 3R | 29897104..29897229 | 896..771 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:50:59 has no hits.
BS18058.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:04:34 Download gff for
BS18058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-PC | 448..1326 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:22:18 Download gff for
BS18058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 521..1403 | 11..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:24:35 Download gff for
BS18058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 521..1403 | 11..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:24:35 Download gff for
BS18058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29897105..29897229 | 771..895 | 100 | -> | Minus |
3R | 29897300..29897645 | 425..770 | 100 | -> | Minus |
3R | 29902184..29902595 | 11..424 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:22:18 Download gff for
BS18058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25722827..25722951 | 771..895 | 100 | -> | Minus |
arm_3R | 25723022..25723367 | 425..770 | 100 | -> | Minus |
arm_3R | 25727906..25728317 | 11..424 | 99 | | Minus |
BS18058.5prime Sequence
834 bp (711 high quality bases) assembled on 2007-06-06
> BS18058.5prime
GAAGTTATCAGTCGACATGTTCATTTTTCCCATACTGTTTGTTCAAATCG
TGATTTCTAATGTCATAAGGAGTCTCAAGCGCCGTCTCGCAAAGCCGCTG
AAAATGTCCGAGGACCTGGACGAGCTCTTCCTGACGCCCATTCCGGCGCC
CTCGGCCGTGGAGCTGCAGCAGTGCATACTGTTCGGCTTCCGGCGCCGCC
TTCATCCCGCCCAGATATTCGAGGAGTGCCGCAACGCCTTTGGGCCCTTC
TGCCCCAGTGCGCAGTACGTGGCGAAGTGGTACCAGCGGTTCCAGGACGG
CTTCTTCAATCTGGACGAGAAGGACGACGAGGAGCTGAGGATCGGGCATG
GCGGCACGCCCACCACCTGCAGTGATTACGATGATGACAGTGATTGCGGG
GAGGCGACCGTTCTGCCCCTGATCCTAAGTGAAATGATCCAACGCAGTGA
GGAGGATGACGATGATGATGGTACTGATGGTTTTGAGAAGGAGAGTGATG
ATGGTCTAGATGGTCATGTGATTGGTTATTGGCAGGGTTATGGCTATTTG
GGTGGCAAGCAAAGGTATAGTTGGGCTGGAACTAAACTTGGAAACTCGGC
TTGCGAGCTGCCCCCGCTGCCGAAATCTCTCATCGGCTTCAACAAGTTAC
TGTGCTCCGATTCGGGACTCCTGAGTGATGTGGAAGGAAACAATAACAGC
AGCGATGGCAGCCGAAAACCAAACGACAATCTTGCTGTGGAGACACANGA
TACCAAGGAGCATGCCACCGATAAGTCACTGCCCTCCTCGCCGAAACGAA
ACACATCCATACCACCAATGCTGGGTGCCAAATC
BS18058.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-PC | 1326 | CG31038-RC | 1..808 | 17..824 | 3971 | 99.6 | Plus |
CG31038-PF | 2193 | CG31038-RF | 1440..1675 | 589..824 | 1111 | 98.7 | Plus |
CG31038-PA | 2193 | CG31038-RA | 1440..1675 | 589..824 | 1111 | 98.7 | Plus |
CG31038-PB | 1818 | CG31038-RB | 1440..1675 | 589..824 | 1111 | 98.7 | Plus |
CG31038-PD | 1818 | CG31038-RD | 1440..1675 | 589..824 | 1111 | 98.7 | Plus |
CG31038-PE | 2193 | CG31038-RE | 1440..1675 | 589..824 | 1111 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-RC | 2039 | CG31038-RC | 74..891 | 17..834 | 4019 | 99.4 | Plus |
CG31038-RG | 2369 | CG31038-RG | 443..1221 | 56..834 | 3824 | 99.4 | Plus |
CG31038-RH | 2015 | CG31038-RH | 74..867 | 17..834 | 3649 | 96.5 | Plus |
CG31038-RG | 2369 | CG31038-RG | 74..113 | 17..56 | 200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29896698..29897229 | 57..588 | 2660 | 100 | Plus |
3R | 32079331 | 3R | 29897300..29897545 | 589..834 | 1159 | 98 | Plus |
3R | 32079331 | 3R | 29895054..29895093 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:46:59 has no hits.
BS18058.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:04:39 Download gff for
BS18058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-PC | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 13:57:46 Download gff for
BS18058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 66..891 | 9..834 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:33:04 Download gff for
BS18058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31038-RC | 66..891 | 9..834 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:33:04 Download gff for
BS18058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29895046..29895093 | 9..56 | 91 | -> | Plus |
3R | 29896698..29897229 | 57..588 | 100 | -> | Plus |
3R | 29897300..29897545 | 589..834 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 13:57:46 Download gff for
BS18058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25720768..25720815 | 9..56 | 91 | -> | Plus |
arm_3R | 25722420..25722951 | 57..588 | 100 | -> | Plus |
arm_3R | 25723022..25723267 | 589..834 | 97 | | Plus |
BS18058.pep Sequence
Translation from 16 to 1341
> BS18058.pep
MFIFPILFVQIVISNVIRSLKRRLAKPLKMSEDLDELFLTPIPAPSAVEL
QQCILFGFRRRLHPAQIFEECRNAFGPFCPSAQYVAKWYQRFQDGFFNLD
EKDDEELRIGHGGTPTTCSDYDDDSDCGEATVLPLILSEMIQRSEEDDDD
DGTDGFEKESDDGLDGHVIGYWQGYGYLGGKQRYSWAGTKLGNSACELPP
LPKSLIGFNKLLCSDSGLLSDVEGNNNSSDGSRKPNDNLAVETQDTKEHA
TDKSLPSSPNGNTSIPPMLVAKSEAKSPSLSAKGNPQAVEAGSTLDAQIA
TLRKEMNGLRQLDLSLLSQLWVLNESIQEFRALIEDQENEDEDDEVEVEV
GNELDEEGNSRVSSSIESVRLEGGADGTSKHLGTIPKVITTQPKVLRDSL
ATASKDQKPVPRMRSAPPPPPPAVLQSLSLERKPPAPSRPT*
BS18058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31038-PC | 441 | CG31038-PC | 1..441 | 1..441 | 2298 | 100 | Plus |
CG31038-PH | 433 | CG31038-PH | 1..433 | 1..441 | 2227 | 98 | Plus |
CG31038-PG | 412 | CG31038-PG | 1..412 | 30..441 | 2160 | 100 | Plus |
CG31038-PE | 730 | CG31038-PE | 479..730 | 190..441 | 1269 | 99.6 | Plus |
CG31038-PA | 730 | CG31038-PA | 479..730 | 190..441 | 1269 | 99.6 | Plus |