Clone Sequence Records
BS18061.complete Sequence
1421 bp assembled on 2009-12-07
GenBank Submission: KX800319
> BS18061.complete
GAAGTTATCAGTCGACATGGCCATCATAACGAGTGCCTTCTTCTCGTCGA
TGAGCTTCGCCGGCCTGTTCTCCGGCTCCCTGTTCCAGCGCTTTGGAATG
CGGCAGGTGGGCGTCACTGGCGGCATCTTGTACTTCCTGGGCACTGGAAT
GCAGTTGTTCGCCACCTCCACGCTACACCTGATCATGGCCTTTAGCGTCG
TTCAGGGATTCGCCTTCGGGCTGATGGTGCCCACCTGCTATACGACATTC
AACCATTATTTTGTCAAGAACCGCGTGATGTGGATGAGCTTTGCCCAGAC
ACTGATTGGCTTGGGCTCCATGCTATATCCGATTGTCATGCAGAAGTTGA
TGTCATGGTACGGCTTCCGCGGTTGCCTGCTCATCCTCACGGGACTGAAT
GCTCATGCGGTGTTCGGGATGCTGGTCATGCACCCAGTGGAGTGGCACAT
GCGTCGCGTGCCCATCCAGCCCGAGGAGCAGGAGGAACTCAAGGAGTTGA
GCCCAACGGTGGTGATTAGAGTGCAGCCGGAAACACCGCTTAAGGCTACC
AGAGAGGAGCCCAACTTTCATACCGCTGATCCAGGAGCGCGAAAGCTCTC
CCACGCCGAGGAGCAAATGCTGAAGGTTCTGTCCAGTCGGGCCTCGAGCA
TCACCAGCCTGGGCAATTGGTCCGGACCCGTGGTGGTCAGTGACGCCTCG
CCCCAGATGATGCACAGCCTGCAGACCTCACGGCGTCCGAGCACGATTGC
CGGTGCATCAGGTGCAGTAGCTCCAGCCCACGCTACCAAAAAGAGCTGGG
TGCGCACCATCGTCGACTTCCTCGATCTCACGCTGCTGAAGAAGCCCATT
TTCGTTAACATCGTGCTGGGCATCACCTTTGCCCTCTACTCCGACATCAC
CTTCTTCACCATGCAGCCAGTCTACCTATTTGAGCTGGGATACAGCAGGC
CCGACACGGCCACCATTATCGCCATTGGAGCGGCCGCAGACTTGGCATCT
CGTATTTTCCTGGCCATCACCGCCGTGTGCATCCAGGTTCCTTCGAGATA
CATTTATTTGGCCGGAGCCGTTTTCACCGTCTTTGCGAGATTCGGTAGGC
GAACCCTTCCTTGGGCTCCAAGAACTCCCTTCCTCCCACTAATCTCACTC
ATTTTCCCACAGCCTTCAACGGAATCACACAGTTTGTGGGCATGGCCTGC
ATCACGGCGGTCATTGGATTTCTGCGCACCTGGCTCCACGTTCCACTGCC
TCTGGTCTTTGCCGACTACTTGCCCAAGGAAAGGTTCGCCACTGGCTATG
GCCTTTTCATGTTCATCCAAGGCAATGCCATGTTCCTCATCGGTCCCATT
GTTGGGTTTATTCGGGACAAGACCAGGGATTACATTTTCGTCTTTCACAT
CCTAAAAGCTTTCTAGACCAT
BS18061.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-RC | 1692 | CG8028-PC | 231..1309 | 16..1094 | 5395 | 100 | Plus |
| CG8028-RD | 1461 | CG8028-PD | 1..1078 | 17..1094 | 5390 | 100 | Plus |
| CG8028-RC | 1692 | CG8028-PC | 1309..1553 | 1162..1406 | 1225 | 100 | Plus |
| CG8028-RD | 1461 | CG8028-PD | 1078..1322 | 1162..1406 | 1225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-RD | 1947 | CG8028-RD | 443..1521 | 16..1094 | 5395 | 100 | Plus |
| CG8028-RC | 1846 | CG8028-RC | 258..1336 | 16..1094 | 5395 | 100 | Plus |
| CG8028-RD | 1947 | CG8028-RD | 1521..1765 | 1162..1406 | 1225 | 100 | Plus |
| CG8028-RC | 1846 | CG8028-RC | 1336..1580 | 1162..1406 | 1225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19278974..19279907 | 949..16 | 4670 | 100 | Minus |
| X | 23542271 | X | 19277642..19277978 | 1285..949 | 1685 | 100 | Minus |
| X | 23542271 | X | 19277442..19277567 | 1406..1281 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:35:30 has no hits.
BS18061.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:26:18 Download gff for
BS18061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RB | 226..1620 | 10..1405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:40 Download gff for
BS18061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RB | 232..1618 | 17..1403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:01 Download gff for
BS18061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 259..1336 | 17..1094 | 100 | == | Plus |
| CG8028-RC | 1337..1577 | 1163..1403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:26:18 Download gff for
BS18061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RB | 226..1627 | 10..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:12 Download gff for
BS18061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 259..1336 | 17..1094 | 100 | == | Plus |
| CG8028-RC | 1337..1577 | 1163..1403 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:12 Download gff for
BS18061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19277445..19277564 | 1284..1403 | 100 | <- | Minus |
| X | 19277644..19277977 | 950..1283 | 100 | <- | Minus |
| X | 19278974..19279906 | 17..949 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:01 Download gff for
BS18061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19171478..19171597 | 1284..1403 | 100 | <- | Minus |
| arm_X | 19171677..19172010 | 950..1283 | 100 | <- | Minus |
| arm_X | 19173007..19173939 | 17..949 | 100 | | Minus |
BS18061.3prime Sequence
819 bp (794 high quality bases) assembled on 2007-06-06
> BS18061.3prime
ATGGTCTAGAAAGCTTTTAGGATGTGAAAGACGAAAATGTAATCCCTGGT
CTTGTCCCGAATAAACCCAACAATGGGACCGATGAGGAACATGGCATTGC
CTTGGATGAACATGAAAAGGCCATAGCCAGTGGCGAACCTTTCCTTGGGC
AAGTAGTCGGCAAAGACCAGAGGCAGTGGAACGTGGAGCCAGGTGCGCAG
AAATCCAATGACCGCCGTGATGCAGGCCATGCCCACAAACTGTGTGATTC
CGTTGAAGGCTGTGGGAAAATGAGTGAGATTAGTGGGAGGAAGGGAGTTC
TTGGAGCCCAAGGAAGGGTTCGCCTACCGAATCTCGCAAAGACGGTGAAA
ACGGCTCCGGCCAAATAAATGTATCTCGAAGGAACCTGGATGCACACGGC
GGTGATGGCCAGGAAAATACGAGATGCCAAGTCTGCGGCCGCTCCAATGG
CGATAATGGTGGCCGTGTCGGGCCTGCTGTATCCCAGCTCAAATAGGTAG
ACTGGCTGCATGGTGAAGAAGGTGATGTCGGAGTAGAGGGCAAAGGTGAT
GCCCAGCACGATGTTAACGAAAATGGGCTTCTTCAGCAGCGTGAGATCGA
GGAAGTCGACGATGGTGCGCACCCAGCTCTTTTTGGTAGCGTGGGCTGGA
GCTACTGCACCTGATGCACCGGCAATCGTGCTCGGACGCCGTGAGGTCTG
CAGGCTGTGCATCATCTGGGGCGAGGCGTCACTGACCACCACGGGTCCGG
ACCAATTGCCCAGGCTGGTGATGCTCGAGGCCCGACTGGACAGAACCTTC
AGCATTTGCTCCTCGGCGT
BS18061.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-PA | 1389 | CG8028-RA | 587..1389 | 819..17 | 4015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-RD | 1947 | CG8028-RD | 1030..1521 | 819..328 | 2460 | 100 | Minus |
| CG8028-RC | 1846 | CG8028-RC | 845..1336 | 819..328 | 2460 | 100 | Minus |
| CG8028-RD | 1947 | CG8028-RD | 1521..1765 | 260..16 | 1225 | 100 | Minus |
| CG8028-RC | 1846 | CG8028-RC | 1336..1580 | 260..16 | 1225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19278974..19279320 | 473..819 | 1735 | 100 | Plus |
| X | 23542271 | X | 19277642..19277978 | 137..473 | 1685 | 100 | Plus |
| X | 23542271 | X | 19277442..19277567 | 16..141 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:33:08 has no hits.
BS18061.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:02 Download gff for
BS18061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-PA | 587..1389 | 17..819 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 07:04:09 Download gff for
BS18061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 1337..1586 | 11..259 | 99 | | Minus |
| CG8028-RC | 845..1336 | 328..819 | 100 | == | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:19 Download gff for
BS18061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 845..1336 | 328..819 | 100 | == | Minus |
| CG8028-RC | 1337..1586 | 11..259 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:19 Download gff for
BS18061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19277644..19277977 | 139..472 | 100 | <- | Plus |
| X | 19277436..19277564 | 11..138 | 98 | <- | Plus |
| X | 19278974..19279320 | 473..819 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 07:04:09 Download gff for
BS18061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19171469..19171597 | 11..138 | 98 | <- | Plus |
| arm_X | 19171677..19172010 | 139..472 | 100 | <- | Plus |
| arm_X | 19173007..19173353 | 473..819 | 100 | | Plus |
BS18061.5prime Sequence
837 bp (738 high quality bases) assembled on 2007-06-06
> BS18061.5prime
GAAGTTATCAGTCGACATGGCCATCATAACGAGTGCCTTCTTCTCGTCGA
TGAGCTTCGCCGGCCTGTTCTCCGGCTCCCTGTTCCAGCGCTTTGGAATG
CGGCAGGTGGGCGTCACTGGCGGCATCTTGTACTTCCTGGGCACTGGAAT
GCAGTTGTTCGCCACCTCCACGCTACACCTGATCATGGCCTTTAGCGTCG
TTCAGGGATTCGCCTTCGGGCTGATGGTGCCCACCTGCTATACGACATTC
AACCATTATTTTGTCAAGAACCGCGTGATGTGGATGAGCTTTGCCCAGAC
ACTGATTGGCTTGGGCTCCATGCTATATCCGATTGTCATGCAGAAGTTGA
TGTCATGGTACGGCTTCCGCGGTTGCCTGCTCATCCTCACGGGACTGAAT
GCTCATGCGGTGTTCGGGATGCTGGTCATGCACCCAGTGGAGTGGCACAT
GCGTCGCGTGCCCATCCAGCCCGAGGAGCAGGAGGAACTCAAGGAGTTGA
GCCCAACGGTGGTGATTAGAGTGCAGCCGGAAACACCGCTTAAGGCTACC
AGAGAGGAGCCCAACTTTCATACCGCTGATCCAGGAGCGCGAAAGCTCTC
CCACGCCGAGGAGCAAATGCTGAAGGTTCTGTCCAGTCGGGCCTCGAGCA
TCACCAGCCTGGGCAATTGGTCCGGACCCGTGGTGGTCAGTGACGCCTCG
CCCCAGATGATGCACAGCCTGCAGACCTCACGGCGTCCGAGCACGATTGC
CGGTGCATCAGGTGCAGTAGCTCCAGCCCACGCTACCAAAAAGAGCTGGG
TGCGCACCATCGTCGACTTCCTCGATCTCACGCTGCT
BS18061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-PA | 1389 | CG8028-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-RD | 1947 | CG8028-RD | 443..1264 | 16..837 | 4110 | 100 | Plus |
| CG8028-RC | 1846 | CG8028-RC | 258..1079 | 16..837 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19279086..19279907 | 837..16 | 4110 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:39:07 has no hits.
BS18061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:07 Download gff for
BS18061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-PA | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:20:58 Download gff for
BS18061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 253..1079 | 10..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:00 Download gff for
BS18061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 253..1079 | 10..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:00 Download gff for
BS18061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19279086..19279912 | 10..837 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:20:58 Download gff for
BS18061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19173119..19173945 | 10..837 | 99 | | Minus |
BS18061.pep Sequence
Translation from 16 to 1404
> BS18061.pep
MAIITSAFFSSMSFAGLFSGSLFQRFGMRQVGVTGGILYFLGTGMQLFAT
STLHLIMAFSVVQGFAFGLMVPTCYTTFNHYFVKNRVMWMSFAQTLIGLG
SMLYPIVMQKLMSWYGFRGCLLILTGLNAHAVFGMLVMHPVEWHMRRVPI
QPEEQEELKELSPTVVIRVQPETPLKATREEPNFHTADPGARKLSHAEEQ
MLKVLSSRASSITSLGNWSGPVVVSDASPQMMHSLQTSRRPSTIAGASGA
VAPAHATKKSWVRTIVDFLDLTLLKKPIFVNIVLGITFALYSDITFFTMQ
PVYLFELGYSRPDTATIIAIGAAADLASRIFLAITAVCIQVPSRYIYLAG
AVFTVFARFGRRTLPWAPRTPFLPLISLIFPQPSTESHSLWAWPASRRSL
DFCAPGSTFHCLWSLPTTCPRKGSPLAMAFSCSSKAMPCSSSVPLLGLFG
TRPGITFSSFTS*
BS18061.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-PD | 486 | CG8028-PD | 1..359 | 1..359 | 1834 | 100 | Plus |
| CG8028-PC | 563 | CG8028-PC | 78..436 | 1..359 | 1834 | 100 | Plus |
| CG8051-PB | 616 | CG8051-PB | 136..496 | 13..350 | 278 | 24.9 | Plus |
| CG8051-PA | 616 | CG8051-PA | 136..496 | 13..350 | 278 | 24.9 | Plus |
| CG8034-PA | 647 | CG8034-PA | 56..200 | 2..146 | 256 | 33.8 | Plus |
