Clone BS18064 Report

Search the DGRC for BS18064

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:180
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptTop1-RA
Protein status:BS18064.pep: full length peptide match
Sequenced Size:2957

Clone Sequence Records

BS18064.complete Sequence

2957 bp assembled on 2009-12-07

GenBank Submission: KX802103

> BS18064.complete
GAAGTTATCAGTCGACATGAGTGGGGATGTGGCTGCCGAAAATAGCATCC
ACATACAAAATGGTGGCAGCTGCGAGGTGGTTCAATCCAACGGGGTGACC
ACCAATGGACACGGACACCACCACCATCATCACCACAGCAGCAGCAGCAG
CAGCAGCAGCAAGCATAAATCCTCCAGCAAGGACAAGCATCGTGATAGGG
AGAGGGAGCACAAGAGCTCCAATTCCTCCAGCTCGTCGAAGGAGCACAAG
AGCAGCAGTCGCGACAAGGATCGACACAAGAGCAGCAGTTCGTCGTCAAA
GCATCGGGACAAGGACAAGGAGCGCGATGGCAGCAGCAACTCGCATCGCA
GCGGCTCATCGTCCAGCCACAAGGATAAGGATGGGAGCAGCAGCAGCAAG
CACAAGTCGTCGTCGGGCCACCACAAGAGGTCCTCGAAGGATAAGGAGCG
ACGCGATAAGGACAAGGATCGCGGCAGCAGTTCATCCAGTCGGCACAAGT
CCTCGTCCAGCTCCCGTGACAAAGAGCGCAGCAGCAGCAGTCACAAGAGC
AGCTCCTCTTCATCCTCATCGAAGAGCAAACATTCCAGTTCGCGGCACAG
CAGCTCATCTTCCTCGAAAGACCAGCCATCGTACGATGGCGTATTTGTTA
AGCCGGAGCCCGTTTCCCAACAGCTGATGCACTCGGGCTCGGTGGATGCT
TTCCAGATGCAACAGCTCGGTAGCTACGAAGCCGCAGCCGCCGGCACCAA
TTTTAATGGCAATGGAAACGTTGCCGGTGCCAACTATAAGAACGGCTACG
AGGAATCGATCGTAGACATCAAGAAGGAGGAGGAGAGCTTTAACAATCTG
TCGCAAGCCAGCTCCTGTGACTACTCCATGTCCCAGTTTCGTGCCGATGA
GCCGCCGTTTGTGGTGAAGCACGAGCAGAGCTACGCCGAAGAGGACAGCA
CCATGAACTACAATGATCACGACGACGACGCCGACGAGATGAACGACGAC
GAGGAGGATGTGCCGCTGGCCATGCGCAAGCGCAAACAGGAGGCAACCGA
TCGTCCTGATGGCGGCATGGATAACGACGATGACGACGACATTCCGCTGC
TGGCGCGCAAGAAGGTTAAGAAGGAGAAGATCAAGAAGGAGTCCAAGGAA
AAGTCCAAGAAGCGGGTCAAGGAGGAGCCCAGCGATGATTACGGCAATGT
CAAGCCGAAAAAGAAAAAGATGAAAAAGGAGCCCGAGCCTGCCGTATCCC
CCGGCAAACGACAGAAGGCAAAGGCCAAGGTGGAGGAGGAGGAGGTTTGG
CGATGGTGGGAGGAGGAGAAGCGTGCCGATGGCGTCAAATGGTCAACGCT
GGAGCACAAGGGACCCGTGTTTGCACCGCGATACGAACGGGTGCCACGCA
ATGTACGGTTCTACTACGATGGCAAGCCGTTGGAGCTCTCTGAGGAAACG
GAGGAGGCAGCCACGTTCTATGCCAAGATGCTGAACCACGACTACTGCAC
CAAGGAAGTGTTCAATAACAACTTCTTCAAGGACTTCCGCAAGTCCATGA
CGCCCAGAGAGAGGGAGATTATCAAGGATTTCCGCAAGTGCAACTTCCAG
GAGATGTTCAACTACTTCCAAGCGGAGTCCGAAAAGCGCAAGGCAGCCAG
CAAGGAGGAGAAGCTGATCAAGAAGAACGAAAACGAGGCGCTGATGAAGG
AATTCGGATTCTGCATGATTGATGGGCACAAGGAGAAGATCGGTAACTTC
CGCCTGGAGCCGCCAGGCCTGTTCCGCGGTCGTGGCGAGCATCCCAAAAT
GGGCATGATCAAGCGGCGCATCCAAGCCAGCGATGTGTCCATTAACTGTG
GCAAAGATTCAAAGGTGCCTTCACCGCCGCCCGGATCTCGCTGGAAGGAG
GTGCGCCACGACAACACGGTCACCTGGCTGGCCTCCTGGATCGAGAATGT
GCAGGGACAGGTCAAGTACATCATGTTGAATCCCTCCTCGAAACTCAAGG
GCGAGAAGGATCACATTAAGTACGAGACGGCGCGACGCCTGGACAAGGTA
ATCGATAAGATACGTGCCACCTATCGCGACGAGTGGAAGTCCAAGGAGAT
GAGGGTTCGCCAGCGAGCGGTGGCCCTTTACTTCATCGACAAACTGGCGC
TGAGAGCAGGCAACGAAAAGGACGAGGATCAGGCCGATACCGTGGGCTGT
TGCTCGCTACGCGTGGAGCATGTCCAGCTCCACAAGGAACTGAACGGAAA
GGAGAACGTGGTGGTCTTTGATTTCCCCGGTAAGGACTCCATTCGGTATT
ACAACGAGGTTGAGGTGGAGAAGCGCGTCTTTAAGAACCTCGAACTGTTC
ATGGAGCACAAGAAGGAGGGCGACGACCTCTTCGATCGTCTCAACACGCA
GGTGCTTAATGAGCATCTCAAGGAGCTGATGGAAGGTCTCACGGCCAAGG
TATTCCGTACGTACAACGCATCGAAAACACTGCAAAGTCAGCTGGATCTG
TTGACCGATCCGAGCGCCACGGTACCGGAAAAGCTGTTGGCCTACAATCG
CGCCAACCGTGCCGTGGCCATCCTCTGTAACCATCAGCGTTCCGTGCCCA
AGAGCCACGAGAAGTCAATGGAGAATCTGAAGGAGAAGATCAAGGCCAAG
CGGGAAGCCATCGAAAAATGCGAGTCCGAGTATCATTCGAGAGACGAGAA
GAAGGGCAAACAGCTGGAGCGCCTAAGGGATCAGCTGAAGAAACTAGAAC
TACAAGAGACTGATAGAGACGAGAATAAGACCATTGCCCTGGGCACATCT
AAGCTAAACTATCTTGATCCACGCATATCGGTGGCTTGGTGTAAAAAGCA
TGACGTGCCGATTGAGAAGATATTCAACAAAACGCAAAGAACCAAATTTC
TGTGGGCCGTTCATATGGCCGATGAGAATTATCGTTTCTAAAAGCTTTCT
AGACCAT

BS18064.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Top1-RC 2925 CG6146-PC 1..2925 17..2941 14625 100 Plus
Top1-RA 2925 CG6146-PA 1..2925 17..2941 14625 100 Plus
Top1-RD 2913 CG6146-PD 16..2913 44..2941 14490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Top1-RC 5325 CG6146-RC 290..3215 17..2942 14630 100 Plus
Top1-RA 4265 CG6146-RA 303..3228 17..2942 14630 100 Plus
Top1-RD 4600 CG6146-RD 665..3563 44..2942 14495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15324070..15325202 1305..2437 5665 100 Plus
X 23542271 X 15321860..15322828 261..1229 4845 100 Plus
X 23542271 X 15325273..15325525 2434..2686 1265 100 Plus
X 23542271 X 15321154..15321371 44..261 1090 100 Plus
X 23542271 X 15325587..15325741 2687..2841 775 100 Plus
X 23542271 X 15325815..15325919 2838..2942 525 100 Plus
X 23542271 X 15322897..15322978 1227..1308 410 100 Plus
Blast to na_te.dros performed 2014-11-28 01:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2399 508..579 116 65.8 Plus

BS18064.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:06 Download gff for BS18064.complete
Subject Subject Range Query Range Percent Splice Strand
Top1-RC 290..3212 17..2939 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:21 Download gff for BS18064.complete
Subject Subject Range Query Range Percent Splice Strand
Top1-RA 303..3225 17..2939 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:39 Download gff for BS18064.complete
Subject Subject Range Query Range Percent Splice Strand
Top1-RC 290..3212 17..2939 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:07 Download gff for BS18064.complete
Subject Subject Range Query Range Percent Splice Strand
Top1-RA 303..3225 17..2939 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:07 Download gff for BS18064.complete
Subject Subject Range Query Range Percent Splice Strand
X 15321154..15321371 44..261 100 -> Plus
X 15319781..15319807 17..43 100 -> Plus
X 15321861..15322827 262..1228 100 -> Plus
X 15322899..15322975 1229..1305 100 -> Plus
X 15324071..15325200 1306..2435 100 -> Plus
X 15325275..15325525 2436..2686 100 -> Plus
X 15325587..15325738 2687..2838 100 -> Plus
X 15325816..15325916 2839..2939 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:21 Download gff for BS18064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15215187..15215404 44..261 100 -> Plus
arm_X 15213814..15213840 17..43 100 -> Plus
arm_X 15215894..15216860 262..1228 100 -> Plus
arm_X 15216932..15217008 1229..1305 100 -> Plus
arm_X 15218104..15219233 1306..2435 100 -> Plus
arm_X 15219308..15219558 2436..2686 100 -> Plus
arm_X 15219620..15219771 2687..2838 100 -> Plus
arm_X 15219849..15219949 2839..2939 100   Plus

BS18064.3prime Sequence

869 bp (818 high quality bases) assembled on 2007-06-06

> BS18064.3prime
ATGGTCTAGAAAGCTTTTAGAAACGATAATTCTCATCGGCCATATGAACG
GCCCACAGAAATTTGGTTCTTTGCGTTTTGTTGAATATCTTCTCAATCGG
CACGTCATGCTTTTTACACCAAGCCACCGATATGCGTGGATCAAGATAGT
TTAGCTTAGATGTGCCCAGGGCAATGGTCTTATTCTCGTCTCTATCAGTC
TCTTGTAGTTCTAGTTTCTTCAGCTGATCCCTTAGGCGCTCCAGCTGTTT
GCCCTTCTTCTCGTCTCTCGAATGATACTCGGACTCGCATTTTTCGATGG
CTTCCCGCTTGGCCTTGATCTTCTCCTTCAGATTCTCCATTGACTTCTCG
TGGCTCTTGGGCACGGAACGCTGATGGTTACAGAGGATGGCCACGGCACG
GTTGGCGCGATTGTAGGCCAACAGCTTTTCCGGTACCGTGGCGCTCGGAT
CGGTCAACAGATCCAGCTGACTTTGCAGTGTTTTCGATGCGTTGTACGTA
CGGAATACCTTGGCCGTGAGACCTTCCATCAGCTCCTTGAGATGCTCATT
AAGCACCTGCGTGTTGAGACGATCGAAGAGGTCGTCGCCCTCCTTCTTGT
GCTCCATGAACAGTTCGAGGTTCTTAAAGACGCGCTTCTCCACCTCAACC
TCGTTGTAATACCGAATGGAGTCCTTACCGGGGAAATCAAAGACCACCAC
GTTCTCCTTTCCGTTCAGTTCCTTGTGGAGCTGGACATGCTCCACGCGTA
GCGAGCAACAGCCCACGGTATCGGCCTGATCCTCGTCCTTTTCGTTGCCT
GCTCTCAGCGCCAGTTTGTCGATGAAGTAAAGGGCCACCGCTCGCTGGCG
AACCCTCATCTCCTTGGAC

BS18064.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6146-PA 2925 Top1-RA 2073..2925 869..17 4265 100 Minus
CG6146-PC 2925 Top1-RC 2073..2925 869..17 4265 100 Minus
CG6146-PB 1746 Top1-RB 894..1746 869..17 4265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
Top1-RD 4600 CG6146-RD 2710..3563 869..16 4270 100 Minus
Top1-RE 3942 CG6146-RE 979..1832 869..16 4270 100 Minus
Top1-RB 2378 CG6146-RB 914..1767 869..16 4270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15324854..15325202 869..521 1745 100 Minus
X 23542271 X 15325273..15325525 524..272 1265 100 Minus
X 23542271 X 15325587..15325741 271..117 775 100 Minus
X 23542271 X 15325815..15325919 120..16 525 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:03:37 has no hits.

BS18064.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:31 Download gff for BS18064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6146-PB 894..1746 17..869 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:45:52 Download gff for BS18064.3prime
Subject Subject Range Query Range Percent Splice Strand
Top1-RB 914..1775 8..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:31 Download gff for BS18064.3prime
Subject Subject Range Query Range Percent Splice Strand
Top1-RB 914..1775 8..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:31 Download gff for BS18064.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15324854..15325200 523..869 100 -> Minus
X 15325275..15325525 272..522 100 -> Minus
X 15325587..15325738 120..271 100 -> Minus
X 15325816..15325927 8..119 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:45:52 Download gff for BS18064.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15218887..15219233 523..869 100 -> Minus
arm_X 15219308..15219558 272..522 100 -> Minus
arm_X 15219620..15219771 120..271 100 -> Minus
arm_X 15219849..15219960 8..119 97   Minus

BS18064.5prime Sequence

787 bp (571 high quality bases) assembled on 2007-06-06

> BS18064.5prime
GAAGTTATCAGTCGACATGAGTGGGGATGTGGCTGCCGAAAATAGCATCC
ACATACAAAATGGTGGCAGCTGCGAGGTGGTTCAATCCAACGGGGTGACC
ACCAATGGACACGGACACCACCACCATCATCACCACAGCAGCAGCAGCAG
CAGCAGCAGCAAGCATAAATCCTCCAGCAAGGACAAGCATCGTGATAGGG
AGAGGGAGCACAAGAGCTCCAATTCCTCCAGCTCGTCGAAGGAGCACAAG
AGCAGCAGTCGCGACAAGGATCGACACAAGAGCAGCAGTTCGTCGTCAAA
GCATCGGGACAAGGACAAGGAGCGCGATGGCAGCAGCAACTCGCATCGCA
GCGGCTCATCGTCCAGCCACAAGGATAAGGATGGGAGCAGCAGCAGCAAG
CACAAGTCGTCGTCGGGCCACCACAAGAGGTCCTCGAAGGATAAGGAGCG
ACGCGATAAGGACAAGGATCGCGGCAGCAGTTCATCCAGTCGGCACAAGT
CCTCGTCCAGCTCCCGTGACAAAGAGCGCAGCAGCAGCAGTCACAAGAGC
AGCTCCTCTTCATCCTCATCGAAGAGCAAACATTCCAGTTCGCGGCACAG
CAGCTCATCTTCCTCGAAAGACCAGCCATCGTACGATGGCGTATTTGTTA
AGCCGGAGCCCGTTTCCCAACAGCTGATGCACTCGGGCTCGGTGGATGCT
TTCCAGATGCAACAGCTCGGTAGCTACGAAGCCGCAGCCGCCGGCACCAA
TTTTTATGGCAATGGAAACGTTGCCGGTGCAAACTAT

BS18064.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6146-PA 2925 Top1-RA 1..771 17..787 3805 99.7 Plus
CG6146-PC 2925 Top1-RC 1..771 17..787 3805 99.7 Plus
CG9924-PE 2490 CG9924-RE 1102..1135 128..161 170 100 Plus
CG9924-PE 2490 CG9924-RE 1149..1187 124..162 145 94.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
Top1-RC 5325 CG6146-RC 290..1060 17..787 3825 99.7 Plus
Top1-RA 4265 CG6146-RA 303..1073 17..787 3825 99.7 Plus
Top1-RD 4600 CG6146-RD 665..1408 44..787 3690 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15321860..15322386 261..787 2605 99.6 Plus
X 23542271 X 15321154..15321371 44..261 1090 100 Plus
3R 32079331 3R 13981788..13981833 161..116 185 93.5 Minus
Blast to na_te.dros performed 2015-02-13 13:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2399 508..579 116 65.8 Plus

BS18064.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:05:36 Download gff for BS18064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6146-PC 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:03:04 Download gff for BS18064.5prime
Subject Subject Range Query Range Percent Splice Strand
Top1-RA 295..1073 8..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:12 Download gff for BS18064.5prime
Subject Subject Range Query Range Percent Splice Strand
Top1-RA 295..1073 8..787 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:12 Download gff for BS18064.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15321154..15321371 44..261 100 -> Plus
X 15321861..15322386 262..787 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:03:04 Download gff for BS18064.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15215187..15215404 44..261 100 -> Plus
arm_X 15215894..15216419 262..787 99   Plus

BS18064.pep Sequence

Translation from 16 to 2940

> BS18064.pep
MSGDVAAENSIHIQNGGSCEVVQSNGVTTNGHGHHHHHHHSSSSSSSSKH
KSSSKDKHRDREREHKSSNSSSSSKEHKSSSRDKDRHKSSSSSSKHRDKD
KERDGSSNSHRSGSSSSHKDKDGSSSSKHKSSSGHHKRSSKDKERRDKDK
DRGSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHSSSRHSSSSSS
KDQPSYDGVFVKPEPVSQQLMHSGSVDAFQMQQLGSYEAAAAGTNFNGNG
NVAGANYKNGYEESIVDIKKEEESFNNLSQASSCDYSMSQFRADEPPFVV
KHEQSYAEEDSTMNYNDHDDDADEMNDDEEDVPLAMRKRKQEATDRPDGG
MDNDDDDDIPLLARKKVKKEKIKKESKEKSKKRVKEEPSDDYGNVKPKKK
KMKKEPEPAVSPGKRQKAKAKVEEEEVWRWWEEEKRADGVKWSTLEHKGP
VFAPRYERVPRNVRFYYDGKPLELSEETEEAATFYAKMLNHDYCTKEVFN
NNFFKDFRKSMTPREREIIKDFRKCNFQEMFNYFQAESEKRKAASKEEKL
IKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKR
RIQASDVSINCGKDSKVPSPPPGSRWKEVRHDNTVTWLASWIENVQGQVK
YIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQR
AVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVV
FDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKEGDDLFDRLNTQVLNEH
LKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRANRAV
AILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCESEYHSRDEKKGKQL
ERLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPIE
KIFNKTQRTKFLWAVHMADENYRF*

BS18064.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
Top1-PC 974 CG6146-PC 1..974 1..974 5109 100 Plus
Top1-PA 974 CG6146-PA 1..974 1..974 5109 100 Plus
Top1-PD 970 CG6146-PD 6..970 10..974 5065 100 Plus
Top1-PB 581 CG6146-PB 5..581 398..974 3020 99 Plus
Top1-PE 593 CG6146-PE 28..593 409..974 2921 97.7 Plus